Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0023567 Lotus japonicus HOM05D003175 ORTHO05D003591 1.7e-54 215.7 107 100.0
Lj5g0018552 Lotus japonicus HOM05D003175 ORTHO05D003591 2.3e-46 188.7 136 74.3
Glyma.20G186000 Glycine max HOM05D003175 ORTHO05D003591 1.1e-21 106.7 135 49.6
VMungo0720G1923 Vigna mungo HOM05D003175 ORTHO05D003591 1.5e-18 96.3 135 44.4
Phvul.007G102300 Phaseolus vulgaris HOM05D003175 ORTHO05D003591 7.6e-18 94.0 135 43.7
Glyma.10G204500 Glycine max HOM05D003175 ORTHO05D003591 1.1e-16 90.1 109 49.5
Medtr1g076310 Medicago truncatula HOM05D003175 ORTHO05D003591 1.9e-16 89.4 136 44.9
Lalb_Chr07g0180911 Lupinus albus HOM05D003175 ORTHO05D003591 3.2e-16 88.6 137 44.5
Ca_09878_v3 Cicer arietinum L. HOM05D003175 ORTHO05D003591 5.5e-16 87.8 138 44.9
Phvul.009G231300 Phaseolus vulgaris HOM05D003175 ORTHO05D003591 2.1e-15 85.9 133 43.6
arahy.Tifrunner.gnm1.ann1.44TKHA Arachis hypogaea HOM05D001215 ORTHO05D001387 4.6e-15 84.7 137 41.6
VMungo0251G0584 Vigna mungo HOM05D003175 ORTHO05D003591 4.6e-15 84.7 133 42.9
Glyma.15G170800 Glycine max HOM05D003175 ORTHO05D003591 1.0e-14 83.6 133 42.9
arahy.Tifrunner.gnm1.ann1.S7RYVI Arachis hypogaea HOM05D003175 ORTHO05D003591 1.3e-14 83.2 142 40.8
Glyma.09G064500 Glycine max HOM05D003175 ORTHO05D003591 1.8e-14 82.8 133 42.1
Psat6g114960 Pisum sativum HOM05D003175 ORTHO05D003591 8.7e-14 80.5 135 42.2
Lalb_Chr08g0232311 Lupinus albus HOM05D003175 ORTHO05D003591 3.3e-13 78.6 137 42.3
Atru.chr8.2333 Acer truncatum HOM05D003175 ORTHO05D003591 5.6e-13 77.8 132 40.9
HanXRQChr10g0319441 Helianthus annuus HOM05D003175 ORTHO05D003591 5.6e-13 77.8 121 43.8
Prupe.7G207200 Prunus persica HOM05D003175 ORTHO05D003591 7.4e-13 77.4 146 39.0
Actinidia38453 Actinidia chinensis HOM05D003175 ORTHO05D003591 9.6e-13 77.0 129 39.5
Os08g0517900 Oryza sativa ssp. japonica HOM05D003175 ORTHO05D003591 9.6e-13 77.0 94 47.9
Actinidia29908 Actinidia chinensis HOM05D003175 ORTHO05D003591 1.3e-12 76.6 129 39.5
TPR.G13431 Trifolium pratense HOM05D003175 ORTHO05D003591 1.3e-12 76.6 121 41.3
Duzib168G1627 Durio zibethinus HOM05D003175 ORTHO05D003591 1.6e-12 76.3 128 40.6
Psat1g140000 Pisum sativum HOM05D003175 ORTHO05D003591 2.1e-12 75.9 134 41.0
Duzib150G0820 Durio zibethinus HOM05D003175 ORTHO05D003591 2.8e-12 75.5 121 41.3
ECA234G4558 Erigeron canadensis HOM05D003175 ORTHO05D003591 2.8e-12 75.5 121 42.1
THA.LOC104811748 Tarenaya hassleriana HOM05D003175 ORTHO05D003591 2.8e-12 75.5 129 41.9
Medtr2g039750 Medicago truncatula HOM05D003175 ORTHO05D003591 4.8e-12 74.7 121 41.3
COL.COLO4_18186 Corchorus olitorius HOM05D003175 ORTHO05D003591 6.2e-12 74.3 129 41.1
Dinv42332 Davidia involucrata HOM05D003175 ORTHO05D003591 6.2e-12 74.3 129 38.0
Gorai.009G032100 Gossypium raimondii HOM05D003175 ORTHO05D003591 6.2e-12 74.3 128 39.8
Lsat_1_v5_gn_5_142921 Lactuca sativa HOM05D003175 ORTHO05D003591 6.2e-12 74.3 128 39.8
Ah.14g083830 Amaranthus hybridus HOM05D003175 ORTHO05D003591 8.2e-12 73.9 140 39.3
arahy.Tifrunner.gnm1.ann1.24WPAI Arachis hypogaea HOM05D003175 ORTHO05D003591 8.2e-12 73.9 135 40.0
arahy.Tifrunner.gnm1.ann1.TVN50Z Arachis hypogaea HOM05D003175 ORTHO05D003591 8.2e-12 73.9 135 40.0
Eucgr.C03473 Eucalyptus grandis HOM05D003175 ORTHO05D003591 8.2e-12 73.9 135 39.3
HanXRQChr12g0354621 Helianthus annuus HOM05D003175 ORTHO05D003591 8.2e-12 73.9 120 42.5
Os09g0498100 Oryza sativa ssp. japonica HOM05D003175 ORTHO05D003591 8.2e-12 73.9 81 49.4
Sed0010998 Sechium edule HOM05D003175 ORTHO05D003591 8.2e-12 73.9 94 46.8
GSVIVG01015186001 Vitis vinifera HOM05D003175 ORTHO05D003591 8.2e-12 73.9 129 38.8
Ah.03g147100 Amaranthus hybridus HOM05D003175 ORTHO05D003591 1.1e-11 73.6 140 40.0
Aqoxy3G03231 Aquilegia oxysepala HOM05D003175 ORTHO05D003591 1.1e-11 73.6 81 48.1
DCAR_031336 Daucus carota HOM05D003175 ORTHO05D003591 1.1e-11 73.6 74 51.4
Medtr5g014070 Medicago truncatula HOM05D003175 ORTHO05D003591 1.1e-11 73.6 121 41.3
Sp6g18640 Schrenkiella parvula HOM05D003175 ORTHO05D003591 1.1e-11 73.6 128 38.3
CANSAT11G2123 Cannabis sativa HOM05D003175 ORTHO05D003591 1.4e-11 73.2 134 40.3
Eucgr.C03471 Eucalyptus grandis HOM05D003175 ORTHO05D003591 1.4e-11 73.2 91 47.3
Gohir.A10G064800 Gossypium hirsutum HOM05D003175 ORTHO05D003591 1.4e-11 73.2 121 40.5
QL01p015391 Quercus lobata HOM05D003175 ORTHO05D003591 1.4e-11 73.2 143 37.1
FAN19G2985 Fragaria x ananassa HOM05D003175 ORTHO05D003591 1.8e-11 72.8 129 38.8
Gohir.D05G031900 Gossypium hirsutum HOM05D003175 ORTHO05D003591 1.8e-11 72.8 121 40.5
Hma1.2p1_1838F.1_g304840 Hydrangea macrophylla HOM05D003175 ORTHO05D003591 1.8e-11 72.8 127 37.8
PSO384G0167 Papaver somniferum HOM05D003175 ORTHO05D003591 1.8e-11 72.8 94 44.7
PSO384G0269 Papaver somniferum HOM05D003175 ORTHO05D003591 1.8e-11 72.8 94 44.7
PSO384G5082 Papaver somniferum HOM05D003175 ORTHO05D003591 1.8e-11 72.8 94 44.7
Sed0014824 Sechium edule HOM05D003175 ORTHO05D003591 1.8e-11 72.8 94 45.7
Thhalv10014987m.g Eutrema salsugineum HOM05D003175 ORTHO05D003591 2.4e-11 72.4 128 37.5
Gohir.A05G030500 Gossypium hirsutum HOM05D003175 ORTHO05D003591 2.4e-11 72.4 128 39.1
MBI16_g10338_MAGBIO Magnolia biondii HOM05D003175 ORTHO05D003591 2.4e-11 72.4 137 37.2
MD02G1081900 Malus domestica HOM05D003175 ORTHO05D003591 2.4e-11 72.4 91 47.3
TWI09G0130 Tripterygium wilfordii HOM05D003175 ORTHO05D003591 2.4e-11 72.4 91 47.3
CSS0022912 Camellia sinensis var. sinensis HOM05D003175 ORTHO05D003591 3.1e-11 72.0 134 38.1
ClCG03G015450 Citrullus lanatus HOM05D003175 ORTHO05D003591 3.1e-11 72.0 119 41.2
FAN23G2612 Fragaria x ananassa HOM05D003175 ORTHO05D003591 3.1e-11 72.0 83 47.0
FAN26G0002 Fragaria x ananassa HOM05D003175 ORTHO05D003591 3.1e-11 72.0 83 47.0
FAN26G2348 Fragaria x ananassa HOM05D003175 ORTHO05D003591 3.1e-11 72.0 83 47.0
FAN28G0810 Fragaria x ananassa HOM05D003175 ORTHO05D003591 3.1e-11 72.0 83 47.0
Gohir.D10G066300 Gossypium hirsutum HOM05D003175 ORTHO05D003591 3.1e-11 72.0 121 40.5
Gorai.011G070400 Gossypium raimondii HOM05D003175 ORTHO05D003591 3.1e-11 72.0 121 40.5
RcHm_v2.0_Chr2g0093641 Rosa chinensis HOM05D003175 ORTHO05D003591 3.1e-11 72.0 121 39.7
CSS0001019 Camellia sinensis var. sinensis HOM05D003175 ORTHO05D003591 4.0e-11 71.6 129 38.8
CiPaw.08G005200 Carya illinoinensis HOM05D003175 ORTHO05D003591 4.0e-11 71.6 136 37.5
Migut.J00455 Erythranthe guttata HOM05D003175 ORTHO05D003591 4.0e-11 71.6 83 45.8
MD15G1209200 Malus domestica HOM05D003175 ORTHO05D003591 4.0e-11 71.6 91 46.2
Rhsim03G0087900 Rhododendron simsii HOM05D003175 ORTHO05D003591 4.0e-11 71.6 129 38.8
Zm00001eb317180 Zea mays HOM05D003175 ORTHO05D003591 4.0e-11 71.6 81 48.1
BcaB08g36038 Brassica carinata HOM05D003175 ORTHO05D003591 5.3e-11 71.2 128 37.5
CSS0037416 Camellia sinensis var. sinensis HOM05D003175 ORTHO05D003591 5.3e-11 71.2 129 38.8
CARHR270680 Cardamine hirsuta HOM05D003175 ORTHO05D003591 5.3e-11 71.2 128 37.5
FvH4_1g07750 Fragaria vesca HOM05D003175 ORTHO05D003591 5.3e-11 71.2 83 45.8
Manes.01G198600 Manihot esculenta HOM05D003175 ORTHO05D003591 5.3e-11 71.2 85 45.9
PSO063G6037 Papaver somniferum HOM05D003175 ORTHO05D003591 5.3e-11 71.2 135 38.5
PSO170G4980 Papaver somniferum HOM05D003175 ORTHO05D003591 5.3e-11 71.2 94 43.6
PGR102G2971 Punica granatum HOM05D003175 ORTHO05D003591 5.3e-11 71.2 128 39.8
AL52U10030 Arabidopsis lyrata HOM05D001215 ORTHO05D003591 6.9e-11 70.9 142 35.2
AT5G56940 Arabidopsis thaliana HOM05D003175 ORTHO05D003591 6.9e-11 70.9 129 38.0
A10p14260 Brassica napus HOM05D003175 ORTHO05D003591 6.9e-11 70.9 128 37.5
BraA10t43517Z Brassica rapa HOM05D003175 ORTHO05D003591 6.9e-11 70.9 128 37.5
Carub.0008s1742 Capsella rubella HOM05D003175 ORTHO05D003591 6.9e-11 70.9 128 36.7
Ciclev10013100m.g Citrus clementina HOM05D003175 ORTHO05D003591 6.9e-11 70.9 91 46.2
QL02p062322 Quercus lobata HOM05D003175 ORTHO05D003591 6.9e-11 70.9 131 38.9
Aa31LG1G18310 Aethionema arabicum HOM05D003175 ORTHO05D003591 9.0e-11 70.5 91 44.0
MSTRG.5776 Avicennia marina HOM05D003175 ORTHO05D003591 1.2e-10 70.1 127 37.0
Oeu011490.1 Olea europaea HOM05D003175 ORTHO05D003591 1.2e-10 70.1 136 36.8
PSO063G1429 Papaver somniferum HOM05D003175 ORTHO05D003591 1.2e-10 70.1 136 35.3
TPR.G10463 Trifolium pratense HOM05D003175 ORTHO05D003591 1.2e-10 70.1 81 46.9
AUR62003470 Chenopodium quinoa HOM05D003175 ORTHO05D003591 1.5e-10 69.7 79 46.8
CsaV3_1G040590 Cucumis sativus L. HOM05D003175 ORTHO05D003591 1.5e-10 69.7 91 45.1
Lj6g0021196 Lotus japonicus HOM05D003175 ORTHO05D003591 1.5e-10 69.7 121 38.8
THA.LOC104813493 Tarenaya hassleriana HOM05D003175 ORTHO05D003591 1.5e-10 69.7 117 39.3
AL8G32800 Arabidopsis lyrata HOM05D003175 ORTHO05D003591 2.0e-10 69.3 129 37.2
TWI53G2020 Tripterygium wilfordii HOM05D003175 ORTHO05D003591 2.0e-10 69.3 138 36.2
MELO3C015489.2 Cucumis melo HOM05D003175 ORTHO05D003591 2.6e-10 68.9 91 44.0
Thecc.09G086900 Theobroma cacao HOM05D003175 ORTHO05D003591 2.6e-10 68.9 121 38.8
Nn7g37004 Nelumbo nucifera HOM05D003175 ORTHO05D003591 3.4e-10 68.6 94 41.5
SGA_v2.0_scaffold40G15473 Striga asiatica HOM05D003175 ORTHO05D003591 3.4e-10 68.6 81 44.4
Aqoxy7G02783 Aquilegia oxysepala HOM05D003175 ORTHO05D003591 4.5e-10 68.2 94 41.5
Sabra04G0148100 Salix brachista HOM05D003175 ORTHO05D003591 4.5e-10 68.2 81 45.7
Solyc07g008660.3 Solanum lycopersicum HOM05D003175 ORTHO05D003591 4.5e-10 68.2 81 44.4
Sopen07g004590 Solanum pennellii HOM05D003175 ORTHO05D003591 4.5e-10 68.2 81 44.4
HPP92_004704 Vanilla planifolia HOM05D003175 ORTHO05D003591 4.5e-10 68.2 81 44.4
Cpa.g.sc128.7 Carica papaya HOM05D003175 ORTHO05D003591 5.8e-10 67.8 91 44.0
CDE02G0210 Ceratophyllum demersum HOM05D003175 ORTHO05D003591 5.8e-10 67.8 81 45.7
AUR62017777 Chenopodium quinoa HOM05D003175 ORTHO05D003591 5.8e-10 67.8 81 44.4
PSO017G4091 Papaver somniferum HOM05D003175 ORTHO05D003591 5.8e-10 67.8 81 43.2
Peaxi162Scf01604g00008 Petunia axillaris HOM05D003175 ORTHO05D003591 5.8e-10 67.8 81 44.4
Potri.004G217400 Populus trichocarpa HOM05D003175 ORTHO05D003591 5.8e-10 67.8 81 45.7
SGA_v2.0_scaffold49G18150 Striga asiatica HOM05D003175 ORTHO05D003591 5.8e-10 67.8 119 37.0
TWI73G0679 Tripterygium wilfordii HOM05D003175 ORTHO05D003591 5.8e-10 67.8 91 45.1
EL10Ac6g15408 Beta vulgaris HOM05D003175 ORTHO05D003591 7.6e-10 67.4 130 36.9
Sc18g0002200 Simmondsia chinensis HOM05D003175 ORTHO05D003591 7.6e-10 67.4 81 44.4
ATR0626G012 Amborella trichopoda HOM05D003175 ORTHO05D003591 1.0e-09 67.0 132 33.3
Cfa006747 Carpinus fangiana HOM05D003175 ORTHO05D003591 1.0e-09 67.0 81 45.7
Cc06_g11550 Coffea canephora HOM05D003175 ORTHO05D003591 1.0e-09 67.0 81 44.4
Haze_21391 Corylus avellana HOM05D003175 ORTHO05D003591 1.3e-09 66.6 136 36.8
SEGI_17182 Sequoiadendron giganteum HOM05D003175 ORTHO05D003591 1.3e-09 66.6 80 45.0
BcaC03g14195 Brassica carinata HOM05D003175 ORTHO05D003591 1.7e-09 66.2 130 36.9
A02p08860 Brassica napus HOM05D003175 ORTHO05D003591 1.7e-09 66.2 130 36.9
C02p14770 Brassica napus HOM05D003175 ORTHO05D003591 1.7e-09 66.2 130 36.9
BolC2t07606H Brassica oleracea HOM05D003175 ORTHO05D003591 1.7e-09 66.2 130 36.9
BraA02t05955Z Brassica rapa HOM05D003175 ORTHO05D003591 1.7e-09 66.2 130 36.9
Haze_04011 Corylus avellana HOM05D003175 ORTHO05D003591 1.7e-09 66.2 136 36.8
MCO07G131 Micromonas commoda HOM05D003175 ORTHO05D003591 1.7e-09 66.2 81 46.9
Nitab4.5_0001519g0020 Nicotiana tabacum HOM05D003175 ORTHO05D003591 2.2e-09 65.9 81 44.4
Nitab4.5_0001586g0160 Nicotiana tabacum HOM05D003175 ORTHO05D003591 2.2e-09 65.9 81 44.4
Nitab4.5_0002593g0030 Nicotiana tabacum HOM05D003175 ORTHO05D003591 2.2e-09 65.9 81 44.4
TAR629G2636 Trochodendron aralioides HOM05D003175 ORTHO05D003591 2.2e-09 65.9 81 42.0
Thhalv10026606m.g Eutrema salsugineum HOM05D003175 ORTHO05D003591 2.9e-09 65.5 91 41.8
Manes.05G131300 Manihot esculenta HOM05D003175 ORTHO05D003591 3.8e-09 65.1 95 41.1
Nitab4.5_0004056g0030 Nicotiana tabacum HOM05D003175 ORTHO05D003591 3.8e-09 65.1 81 44.4
THA.LOC104804346 Tarenaya hassleriana HOM05D003175 ORTHO05D003591 4.9e-09 64.7 81 42.0
BcaNung04917 Brassica carinata HOM05D003175 ORTHO05D003591 8.4e-09 63.9 81 42.0
BcaNung04920 Brassica carinata HOM05D003175 ORTHO05D003591 8.4e-09 63.9 81 42.0
AT4G34620 Arabidopsis thaliana HOM05D003175 ORTHO05D003591 1.1e-08 63.5 81 42.0
Carub.0007s0566 Capsella rubella HOM05D003175 ORTHO05D003591 1.1e-08 63.5 81 42.0
Sp7g32410 Schrenkiella parvula HOM05D003175 ORTHO05D003591 1.4e-08 63.2 81 40.7
VMungo0251G0230 Vigna mungo HOM05D003175 ORTHO05D003591 1.4e-08 63.2 84 47.6
Dinv36778 Davidia involucrata HOM05D003175 ORTHO05D003591 1.9e-08 62.8 138 33.3
AL7G16580 Arabidopsis lyrata HOM05D003175 ORTHO05D003591 2.5e-08 62.4 81 40.7
BcaNung00682 Brassica carinata HOM05D003175 ORTHO05D003591 2.5e-08 62.4 81 40.7
A01p03870 Brassica napus HOM05D003175 ORTHO05D003591 2.5e-08 62.4 81 40.7
C01p04180 Brassica napus HOM05D003175 ORTHO05D003591 2.5e-08 62.4 81 40.7
BolC1t00406H Brassica oleracea HOM05D003175 ORTHO05D003591 2.5e-08 62.4 81 40.7
BraA01t00374Z Brassica rapa HOM05D003175 ORTHO05D003591 2.5e-08 62.4 81 40.7
Aa31LG2G15900 Aethionema arabicum HOM05D003175 ORTHO05D003591 3.2e-08 62.0 81 40.7
AagrBONN_evm.TU.Sc2ySwM_228.1093 Anthoceros agrestis HOM05D003175 ORTHO05D003591 3.2e-08 62.0 84 42.9
Mapoly0087s0037 Marchantia polymorpha HOM05D003175 ORTHO05D003591 2.7e-07 58.9 82 41.5
SEGI_09210 Sequoiadendron giganteum HOM05D003175 ORTHO05D003591 2.7e-07 58.9 106 36.8
Pp3c2_38140 Physcomitrium patens HOM05D003175 ORTHO05D003591 1.0e-06 57.0 84 39.3
Potri.013G128200 Populus trichocarpa HOM05D003175 ORTHO05D003591 2.3e-06 55.8 81 38.3
Sabra13G0107100 Salix brachista HOM05D003175 ORTHO05D003591 2.3e-06 55.8 81 38.3
CSS0031089 Camellia sinensis var. sinensis HOM05D003175 ORTHO05D003591 3.0e-06 55.5 80 43.8
SMO119G0404 Selaginella moellendorffii HOM05D003175 ORTHO05D003591 3.9e-06 55.1 81 37.0
CDE06G2360 Ceratophyllum demersum HOM05D003175 ORTHO05D003591 6.7e-06 54.3 32 71.9


User provided reference genes

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