Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0023471 Lotus japonicus HOM05D004428 ORTHO05D048467 1.7e-51 205.7 99 100.0
Glyma.04G018100 Glycine max HOM05D004428 ORTHO05D006381 4.3e-15 84.7 53 77.4
Lj1g0006576 Lotus japonicus HOM05D004428 ORTHO05D006381 4.3e-15 84.7 53 79.2
TPR.G38192 Trifolium pratense HOM05D004428 ORTHO05D048467 4.3e-15 84.7 53 79.2
arahy.Tifrunner.gnm1.ann1.W2TUZB Arachis hypogaea HOM05D004428 ORTHO05D006381 9.5e-15 83.6 54 74.1
arahy.Tifrunner.gnm1.ann1.ZHV6CG Arachis hypogaea HOM05D004428 ORTHO05D006381 9.5e-15 83.6 54 74.1
TPR.G33901 Trifolium pratense HOM05D004428 ORTHO05D006381 9.5e-15 83.6 53 77.4
Duzib116G0794 Durio zibethinus HOM05D004428 ORTHO05D006381 2.1e-14 82.4 110 40.9
Phvul.009G010600 Phaseolus vulgaris HOM05D004428 ORTHO05D006381 2.1e-14 82.4 53 73.6
Medtr3g115250 Medicago truncatula HOM05D004428 ORTHO05D006381 2.8e-14 82.0 53 71.7
Glyma.06G018400 Glycine max HOM05D004428 ORTHO05D006381 3.6e-14 81.6 53 75.5
Medtr7g029115 Medicago truncatula HOM05D004428 ORTHO05D006381 3.6e-14 81.6 53 69.8
VMungo1309G3122 Vigna mungo HOM05D004428 ORTHO05D006381 6.2e-14 80.9 53 71.7
Oeu000690.4 Olea europaea HOM05D004428 ORTHO05D006381 4.0e-13 78.2 52 69.2
Potri.005G250100 Populus trichocarpa HOM05D004428 ORTHO05D006381 5.2e-13 77.8 52 65.4
Ca_15435_v3 Cicer arietinum L. HOM05D004428 ORTHO05D006381 6.8e-13 77.4 53 69.8
Ca_15460_v3 Cicer arietinum L. HOM05D004428 ORTHO05D006381 6.8e-13 77.4 53 69.8
Dinv31938 Davidia involucrata HOM05D004428 ORTHO05D006381 6.8e-13 77.4 54 68.5
Actinidia17038 Actinidia chinensis HOM05D004428 ORTHO05D006381 1.2e-12 76.6 54 66.7
SGA_v2.0_scaffold108G30858 Striga asiatica HOM05D004428 ORTHO05D006381 1.2e-12 76.6 53 67.9
vmacro21813 Vaccinium macrocarpon HOM05D004428 ORTHO05D006381 2.0e-12 75.9 53 62.3
Sabra05G0193700 Salix brachista HOM05D004428 ORTHO05D006381 2.6e-12 75.5 53 60.4
TPR.G21677 Trifolium pratense HOM05D004428 ORTHO05D006381 2.6e-12 75.5 53 62.3
Cpa.g.sc26.200 Carica papaya HOM05D004428 ORTHO05D006381 3.4e-12 75.1 53 60.4
Actinidia15489 Actinidia chinensis HOM05D004428 ORTHO05D006381 4.4e-12 74.7 54 64.8
Rhsim06G0007600 Rhododendron simsii HOM05D004428 ORTHO05D006381 4.4e-12 74.7 54 63.0
Lalb_Chr11g0061651 Lupinus albus HOM05D004428 ORTHO05D006381 5.8e-12 74.3 53 66.0
MBI08_g41523_MAGBIO Magnolia biondii HOM05D004428 ORTHO05D006381 5.8e-12 74.3 54 61.1
TAR625G0496 Trochodendron aralioides HOM05D004428 ORTHO05D006381 5.8e-12 74.3 54 66.7
Aqoxy5G01044 Aquilegia oxysepala HOM05D004428 ORTHO05D006381 7.5e-12 73.9 54 63.0
CiPaw.07G139000 Carya illinoinensis HOM05D004428 ORTHO05D006381 9.9e-12 73.6 53 60.4
Psat5g158960 Pisum sativum HOM05D004428 ORTHO05D006381 9.9e-12 73.6 53 71.7
MSTRG.4456 Avicennia marina HOM05D004428 ORTHO05D006381 1.3e-11 73.2 53 62.3
MD06G1211900 Malus domestica HOM05D004428 ORTHO05D006381 1.3e-11 73.2 53 64.2
CANSAT56G2267 Cannabis sativa HOM05D004428 ORTHO05D006381 1.7e-11 72.8 53 62.3
TAR381G0098 Trochodendron aralioides HOM05D004428 ORTHO05D006381 2.2e-11 72.4 54 64.8
CSS0024308 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D006381 2.9e-11 72.0 53 60.4
COL.COLO4_04008 Corchorus olitorius HOM05D004428 ORTHO05D006381 2.9e-11 72.0 53 58.5
Peaxi162Scf00893g00431 Petunia axillaris HOM05D004428 ORTHO05D006381 2.9e-11 72.0 54 61.1
Sopen04g035950 Solanum pennellii HOM05D004428 ORTHO05D006381 2.9e-11 72.0 54 61.1
GSVIVG01013363001 Vitis vinifera HOM05D004428 ORTHO05D006381 3.7e-11 71.6 54 59.3
PGSC0003DMG400009978 Solanum tuberosum HOM05D004428 ORTHO05D006381 4.9e-11 71.2 54 61.1
Haze_22769 Corylus avellana HOM05D004428 ORTHO05D006381 6.4e-11 70.9 53 62.3
Nitab4.5_0000588g0120 Nicotiana tabacum HOM05D004428 ORTHO05D006381 6.4e-11 70.9 54 61.1
Cfa014074 Carpinus fangiana HOM05D004428 ORTHO05D006381 8.3e-11 70.5 53 62.3
COL.COLO4_23022 Corchorus olitorius HOM05D004428 ORTHO05D006381 1.1e-10 70.1 53 54.7
HanXRQChr06g0184011 Helianthus annuus HOM05D004428 ORTHO05D006381 1.1e-10 70.1 54 63.0
QL08p042264 Quercus lobata HOM05D004428 ORTHO05D006381 1.1e-10 70.1 53 60.4
Solyc04g082330.3 Solanum lycopersicum HOM05D004428 ORTHO05D006381 1.1e-10 70.1 54 59.3
MD14G1222500 Malus domestica HOM05D004428 ORTHO05D006381 1.9e-10 69.3 53 60.4
Prupe.5G218100 Prunus persica HOM05D004428 ORTHO05D006381 1.9e-10 69.3 53 62.3
unitig_22.g5423 Utricularia gibba HOM05D004428 ORTHO05D006381 1.9e-10 69.3 54 61.1
CSS0033739 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D006381 2.4e-10 68.9 53 58.5
Atru.chr13.133 Acer truncatum HOM05D004428 ORTHO05D006381 3.2e-10 68.6 53 58.5
Eucgr.E02846 Eucalyptus grandis HOM05D004428 ORTHO05D006381 3.2e-10 68.6 53 52.8
Nn5g30938 Nelumbo nucifera HOM05D004428 ORTHO05D006381 4.1e-10 68.2 53 56.6
SalBow7G1176 Salvia bowleyana HOM05D004428 ORTHO05D006381 4.1e-10 68.2 52 63.5
ClCG06G001320 Citrullus lanatus HOM05D004428 ORTHO05D006381 5.4e-10 67.8 53 58.5
FAN13G0888 Fragaria x ananassa HOM05D004428 ORTHO05D006381 5.4e-10 67.8 53 60.4
Manes.18G005500 Manihot esculenta HOM05D004428 ORTHO05D006381 5.4e-10 67.8 53 58.5
FvH4_5g12620 Fragaria vesca HOM05D004428 ORTHO05D006381 7.1e-10 67.4 53 58.5
FAN18G0222 Fragaria x ananassa HOM05D004428 ORTHO05D006381 7.1e-10 67.4 53 58.5
FAN18G3186 Fragaria x ananassa HOM05D004428 ORTHO05D006381 7.1e-10 67.4 53 58.5
Gohir.A01G105800 Gossypium hirsutum HOM05D004428 ORTHO05D006381 7.1e-10 67.4 53 56.6
Gohir.A01G105900 Gossypium hirsutum HOM05D004428 ORTHO05D006381 7.1e-10 67.4 53 56.6
MELO3C022402.2 Cucumis melo HOM05D004428 ORTHO05D006381 9.2e-10 67.0 53 58.5
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 9.2e-10 67.0 53 60.4
FAN08G2755 Fragaria x ananassa HOM05D004428 ORTHO05D006381 9.2e-10 67.0 53 58.5
Gohir.D01G092100 Gossypium hirsutum HOM05D004428 ORTHO05D006381 9.2e-10 67.0 53 54.7
Lsat_1_v5_gn_2_5041 Lactuca sativa HOM05D004428 ORTHO05D006381 9.2e-10 67.0 54 59.3
PSO384G1617 Papaver somniferum HOM05D004428 ORTHO05D006381 9.2e-10 67.0 54 53.7
RcHm_v2.0_Chr7g0184701 Rosa chinensis HOM05D004428 ORTHO05D006381 9.2e-10 67.0 53 58.5
Zm00001eb266050 Zea mays HOM05D004428 ORTHO05D006381 1.6e-09 66.2 54 55.6
PSO170G1451 Papaver somniferum HOM05D004428 ORTHO05D006381 2.1e-09 65.9 54 51.9
PSO170G2196 Papaver somniferum HOM05D004428 ORTHO05D006381 2.1e-09 65.9 54 51.9
Cc10_g00690 Coffea canephora HOM05D004428 ORTHO05D006381 2.7e-09 65.5 53 60.4
ECA238G2671 Erigeron canadensis HOM05D004428 ORTHO05D006381 2.7e-09 65.5 54 55.6
PGR083G1674 Punica granatum HOM05D004428 ORTHO05D006381 2.7e-09 65.5 53 52.8
Sed0021929 Sechium edule HOM05D004428 ORTHO05D006381 2.7e-09 65.5 53 58.5
Gorai.002G117200 Gossypium raimondii HOM05D004428 ORTHO05D006381 3.5e-09 65.1 53 54.7
Sp1g36710 Schrenkiella parvula HOM05D004428 ORTHO05D006381 3.5e-09 65.1 53 60.4
C06p04650 Brassica napus HOM05D004428 ORTHO05D006381 4.6e-09 64.7 53 58.5
CAN.G311.114 Capsicum annuum HOM05D004428 ORTHO05D006381 4.6e-09 64.7 54 55.6
FAN04G3173 Fragaria x ananassa HOM05D004428 ORTHO05D006381 4.6e-09 64.7 53 58.5
SHI13858 Sapria himalayana HOM05D004428 ORTHO05D006381 4.6e-09 64.7 53 52.8
Aa31LG5G19860 Aethionema arabicum HOM05D004428 ORTHO05D006381 7.8e-09 63.9 53 56.6
BcaB02g11109 Brassica carinata HOM05D004428 ORTHO05D006381 7.8e-09 63.9 53 56.6
A06p03530 Brassica napus HOM05D004428 ORTHO05D006381 7.8e-09 63.9 53 58.5
BraA06t23561Z Brassica rapa HOM05D004428 ORTHO05D006381 7.8e-09 63.9 53 58.5
Gohir.D01G092200 Gossypium hirsutum HOM05D004428 ORTHO05D006381 7.8e-09 63.9 53 54.7
Gorai.002G117400 Gossypium raimondii HOM05D004428 ORTHO05D006381 7.8e-09 63.9 53 54.7
HanXRQChr14g0428331 Helianthus annuus HOM05D004428 ORTHO05D006381 7.8e-09 63.9 53 58.5
A05p20450 Brassica napus HOM05D004428 ORTHO05D006381 1.3e-08 63.2 53 56.6
Hund05114 Selenicereus undatus HOM05D004428 ORTHO05D006381 1.3e-08 63.2 53 52.8
CARHR292410 Cardamine hirsuta HOM05D004428 ORTHO05D006381 1.7e-08 62.8 53 54.7
Migut.C00959 Erythranthe guttata HOM05D004428 ORTHO05D006381 1.7e-08 62.8 50 58.0
Thecc.08G058600 Theobroma cacao HOM05D004428 ORTHO05D006381 1.7e-08 62.8 50 54.0
Ah.14g084500 Amaranthus hybridus HOM05D004428 ORTHO05D006381 2.3e-08 62.4 53 52.8
BcaNung07321 Brassica carinata HOM05D004428 ORTHO05D006381 2.3e-08 62.4 53 56.6
C05p34310 Brassica napus HOM05D004428 ORTHO05D006381 2.3e-08 62.4 53 56.6
BraA05t20951Z Brassica rapa HOM05D004428 ORTHO05D006381 2.3e-08 62.4 53 56.6
EL10Ac2g02835 Beta vulgaris HOM05D004428 ORTHO05D006381 3.0e-08 62.0 53 52.8
BcaC05g27470 Brassica carinata HOM05D004428 ORTHO05D006381 3.0e-08 62.0 53 56.6
BolC5t32163H Brassica oleracea HOM05D004428 ORTHO05D006381 3.0e-08 62.0 53 56.6
Carub.0001s3423 Capsella rubella HOM05D004428 ORTHO05D006381 3.0e-08 62.0 54 55.6
AT1G42440 Arabidopsis thaliana HOM05D004428 ORTHO05D006381 3.9e-08 61.6 54 55.6
EL10Ac1g01970 Beta vulgaris HOM05D004428 ORTHO05D006381 5.1e-08 61.2 53 52.8
CsaV3_6G007250 Cucumis sativus L. HOM05D004428 ORTHO05D006381 5.1e-08 61.2 53 54.7
Thhalv10011257m.g Eutrema salsugineum HOM05D004428 ORTHO05D006381 5.1e-08 61.2 53 56.6
Ciclev10000330m.g Citrus clementina HOM05D004428 ORTHO05D006381 6.6e-08 60.8 54 51.9
PSO339G3255 Papaver somniferum HOM05D004428 ORTHO05D006381 1.1e-07 60.1 49 57.1
AUR62036878 Chenopodium quinoa HOM05D004428 ORTHO05D006381 1.5e-07 59.7 53 50.9
AUR62043175 Chenopodium quinoa HOM05D004428 ORTHO05D006381 1.5e-07 59.7 53 50.9
Lj6C24T17 Lonicera japonica HOM05D004428 ORTHO05D006381 1.5e-07 59.7 52 55.8
TWI12G0814 Tripterygium wilfordii HOM05D004428 ORTHO05D006381 1.5e-07 59.7 53 49.1
BcaB04g17056 Brassica carinata HOM05D004428 ORTHO05D006381 1.9e-07 59.3 53 52.8
BolC6t35594H Brassica oleracea HOM05D004428 ORTHO05D006381 1.9e-07 59.3 53 54.7
CDE05G2560 Ceratophyllum demersum HOM05D004428 ORTHO05D006381 1.9e-07 59.3 54 50.0
PSO210G2012 Papaver somniferum HOM05D004428 ORTHO05D006381 3.3e-07 58.5 53 52.8
THA.LOC104806921 Tarenaya hassleriana HOM05D004428 ORTHO05D006381 3.3e-07 58.5 53 52.8
Glyma.20G030400 Glycine max HOM05D004428 ORTHO05D035991 4.3e-07 58.2 39 71.8
Os11g0298400 Oryza sativa ssp. japonica HOM05D004428 ORTHO05D006381 4.3e-07 58.2 54 50.0
PSO170G5451 Papaver somniferum HOM05D004428 ORTHO05D006381 7.3e-07 57.4 53 50.9
Sc15g0004460 Simmondsia chinensis HOM05D004428 ORTHO05D006381 2.1e-06 55.8 53 50.9
ATR0796G321 Amborella trichopoda HOM05D004428 ORTHO05D006381 2.8e-06 55.5 53 45.3
HPP92_013006 Vanilla planifolia HOM05D004428 ORTHO05D006381 2.8e-06 55.5 54 46.3


User provided reference genes

Program Settings