Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0021665 Lotus japonicus HOM05D006316 ORTHO05D008032 2.4e-130 468.8 223 100.0
LjContig00575g0004232 Lotus japonicus HOM05D006316 ORTHO05D008032 9.4e-103 377.1 184 97.3
LjContig00576g0014419 Lotus japonicus HOM05D006316 ORTHO05D008032 9.4e-103 377.1 184 97.3
Lj2g0021371 Lotus japonicus HOM05D006316 ORTHO05D008032 1.8e-85 319.7 156 98.1
Lj4g0011706 Lotus japonicus HOM05D006316 ORTHO05D008032 1.6e-78 296.6 228 68.4
arahy.Tifrunner.gnm1.ann1.NEV66G Arachis hypogaea HOM05D006316 ORTHO05D008032 9.8e-76 287.3 231 66.2
arahy.Tifrunner.gnm1.ann1.ZN6V8N Arachis hypogaea HOM05D006316 ORTHO05D008032 9.8e-76 287.3 231 66.2
VMungo1215G0091 Vigna mungo HOM05D006316 ORTHO05D008032 1.3e-75 287.0 231 66.2
Glyma.13G117200 Glycine max HOM05D006316 ORTHO05D008032 6.3e-75 284.6 231 65.8
Phvul.003G124500 Phaseolus vulgaris HOM05D006316 ORTHO05D008032 1.1e-74 283.9 231 64.5
Medtr4g124260 Medicago truncatula HOM05D006316 ORTHO05D008032 2.4e-74 282.7 233 63.9
Lalb_Chr12g0200491 Lupinus albus HOM05D006316 ORTHO05D008032 5.6e-71 271.6 238 62.6
CiPaw.01G127100 Carya illinoinensis HOM05D006316 ORTHO05D008032 6.1e-70 268.1 233 60.1
QL06p014723 Quercus lobata HOM05D006316 ORTHO05D008032 3.0e-69 265.8 231 60.6
DCAR_002560 Daucus carota HOM05D006316 ORTHO05D008032 2.0e-68 263.1 220 61.8
GSVIVG01017710001 Vitis vinifera HOM05D006316 ORTHO05D008032 2.0e-68 263.1 231 60.6
CSS0049495 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 2.6e-68 262.7 227 60.4
Cfa015754 Carpinus fangiana HOM05D006316 ORTHO05D008032 1.7e-67 260.0 221 61.1
PGR031G3724 Punica granatum HOM05D006316 ORTHO05D008032 2.2e-67 259.6 231 58.9
TWI74G1230 Tripterygium wilfordii HOM05D006316 ORTHO05D008032 2.9e-67 259.2 226 61.9
CSS0037556 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 3.7e-67 258.8 227 59.5
Ciclev10005749m.g Citrus clementina HOM05D006316 ORTHO05D008032 4.9e-67 258.5 231 58.9
Thhalv10021423m.g Eutrema salsugineum HOM05D006316 ORTHO05D008032 8.3e-67 257.7 210 62.4
Duzib128G0584 Durio zibethinus HOM05D006316 ORTHO05D008032 3.2e-66 255.8 229 58.1
Gohir.D05G000900 Gossypium hirsutum HOM05D006316 ORTHO05D008032 4.1e-66 255.4 229 57.2
Gorai.009G000800 Gossypium raimondii HOM05D006316 ORTHO05D008032 4.1e-66 255.4 229 57.2
CSS0010190 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 5.4e-66 255.0 182 70.3
Eucgr.B02199 Eucalyptus grandis HOM05D006316 ORTHO05D008032 7.0e-66 254.6 233 59.2
Hund12266 Selenicereus undatus HOM05D006316 ORTHO05D008032 7.0e-66 254.6 225 57.8
CARHR092900 Cardamine hirsuta HOM05D006316 ORTHO05D008032 9.2e-66 254.2 223 58.7
Sp3g15720 Schrenkiella parvula HOM05D006316 ORTHO05D008032 9.2e-66 254.2 200 64.0
Sed0018318 Sechium edule HOM05D006316 ORTHO05D008032 9.2e-66 254.2 229 58.1
C05p48790 Brassica napus HOM05D006316 ORTHO05D008032 1.6e-65 253.4 200 63.0
BolC5t33616H Brassica oleracea HOM05D006316 ORTHO05D008032 1.6e-65 253.4 200 63.0
Cc07_g19930 Coffea canephora HOM05D006316 ORTHO05D008032 1.6e-65 253.4 224 57.6
Atru.chr4.3188 Acer truncatum HOM05D006316 ORTHO05D008032 2.0e-65 253.1 231 56.3
Gohir.A05G000600 Gossypium hirsutum HOM05D006316 ORTHO05D008032 2.0e-65 253.1 229 56.8
MSTRG.20325 Avicennia marina HOM05D006316 ORTHO05D008032 2.7e-65 252.7 220 58.2
AUR62002525 Chenopodium quinoa HOM05D006316 ORTHO05D008032 2.7e-65 252.7 227 57.7
Manes.05G122900 Manihot esculenta HOM05D006316 ORTHO05D008032 2.7e-65 252.7 218 60.1
EL10Ac3g06220 Beta vulgaris HOM05D006316 ORTHO05D008032 3.5e-65 252.3 229 57.2
Sc19g0002500 Simmondsia chinensis HOM05D006316 ORTHO05D008032 3.5e-65 252.3 188 68.1
BcaC05g28772 Brassica carinata HOM05D006316 ORTHO05D008032 4.6e-65 251.9 200 62.5
Carub.0003s1730 Capsella rubella HOM05D006316 ORTHO05D008032 4.6e-65 251.9 210 61.9
AL3G30660 Arabidopsis lyrata HOM05D006316 ORTHO05D008032 7.8e-65 251.1 231 56.7
AT3G17590 Arabidopsis thaliana HOM05D006316 ORTHO05D008032 1.3e-64 250.4 231 56.7
Lj6A704G50 Lonicera japonica HOM05D006316 ORTHO05D008032 1.3e-64 250.4 218 57.8
CsaV3_3G015610 Cucumis sativus L. HOM05D006316 ORTHO05D008032 1.7e-64 250.0 233 57.5
HanXRQChr05g0148931 Helianthus annuus HOM05D006316 ORTHO05D008032 1.7e-64 250.0 228 57.9
Lsat_1_v5_gn_6_117760 Lactuca sativa HOM05D006316 ORTHO05D008032 2.3e-64 249.6 226 56.6
BcaB06g25834 Brassica carinata HOM05D006316 ORTHO05D008032 3.0e-64 249.2 200 62.5
A05p32260 Brassica napus HOM05D006316 ORTHO05D008032 3.0e-64 249.2 191 64.9
MELO3C006760.2 Cucumis melo HOM05D006316 ORTHO05D008032 3.0e-64 249.2 233 57.1
THA.LOC104826519 Tarenaya hassleriana HOM05D006316 ORTHO05D008032 3.0e-64 249.2 210 62.4
TPR.G12708 Trifolium pratense HOM05D006316 ORTHO05D008032 5.0e-64 248.4 214 61.2
CAN.G255.2 Capsicum annuum HOM05D006316 ORTHO05D008032 6.6e-64 248.1 222 58.6
BraA05t22055Z Brassica rapa HOM05D006316 ORTHO05D008032 8.6e-64 247.7 191 64.4
Migut.B00749 Erythranthe guttata HOM05D006316 ORTHO05D008032 1.1e-63 247.3 220 57.3
SalBow7G1663 Salvia bowleyana HOM05D006316 ORTHO05D008032 1.5e-63 246.9 222 58.1
Gohir.A09G135800 Gossypium hirsutum HOM05D006316 ORTHO05D008032 2.5e-63 246.1 226 57.1
Ah.07g202850 Amaranthus hybridus HOM05D006316 ORTHO05D008032 3.3e-63 245.7 192 67.2
COL.COLO4_13438 Corchorus olitorius HOM05D006316 ORTHO05D008032 3.3e-63 245.7 184 65.2
Aa31LG8G4460 Aethionema arabicum HOM05D006316 ORTHO05D008032 4.3e-63 245.4 184 66.8
Nitab4.5_0000051g0260 Nicotiana tabacum HOM05D006316 ORTHO05D008032 5.6e-63 245.0 223 57.4
Actinidia24554 Actinidia chinensis HOM05D006316 ORTHO05D008032 7.3e-63 244.6 217 58.1
Haze_00749 Corylus avellana HOM05D006316 ORTHO05D008032 7.3e-63 244.6 214 60.3
Psat4g020720 Pisum sativum HOM05D006316 ORTHO05D008032 7.3e-63 244.6 231 58.9
ClCG05G006940 Citrullus lanatus HOM05D006316 ORTHO05D008032 9.5e-63 244.2 245 55.5
Gohir.D09G137500 Gossypium hirsutum HOM05D006316 ORTHO05D008032 1.2e-62 243.8 180 66.7
Sopen11g008410 Solanum pennellii HOM05D006316 ORTHO05D008032 1.2e-62 243.8 180 67.8
Nn4g25293 Nelumbo nucifera HOM05D006316 ORTHO05D008032 1.6e-62 243.4 231 55.4
Nitab4.5_0004737g0050 Nicotiana tabacum HOM05D006316 ORTHO05D008032 2.1e-62 243.0 223 57.0
ECA246G2315 Erigeron canadensis HOM05D006316 ORTHO05D008032 4.7e-62 241.9 221 56.1
Peaxi162Scf00571g00412 Petunia axillaris HOM05D006316 ORTHO05D008032 8.0e-62 241.1 224 56.7
CANSAT56G2492 Cannabis sativa HOM05D006316 ORTHO05D008032 1.0e-61 240.7 230 57.8
Potri.010G004100 Populus trichocarpa HOM05D006316 ORTHO05D008032 2.3e-61 239.6 230 53.5
Gorai.006G157900 Gossypium raimondii HOM05D006316 ORTHO05D008032 3.1e-61 239.2 180 65.6
vmacro04190 Vaccinium macrocarpon HOM05D006316 ORTHO05D008032 8.9e-61 237.7 243 53.9
MD13G1137100 Malus domestica HOM05D006316 ORTHO05D008032 2.6e-60 236.1 231 53.2
SGA_v2.0_scaffold131G34373 Striga asiatica HOM05D006316 ORTHO05D008032 7.5e-60 234.6 250 51.2
Sopen11g008420 Solanum pennellii HOM05D006316 ORTHO05D008032 9.8e-60 234.2 164 72.6
CDE12G0513 Ceratophyllum demersum HOM05D006316 ORTHO05D008032 1.3e-59 233.8 229 52.4
unitig_578.g15959 Utricularia gibba HOM05D006316 ORTHO05D008032 2.2e-59 233.0 225 54.2
Aqoxy2G02444 Aquilegia oxysepala HOM05D006316 ORTHO05D008032 2.9e-59 232.6 218 53.7
PSO210G4075 Papaver somniferum HOM05D006316 ORTHO05D008032 1.9e-58 229.9 217 54.4
PSO761G0163 Papaver somniferum HOM05D006316 ORTHO05D008032 7.0e-58 228.0 217 53.5
TAR365G1184 Trochodendron aralioides HOM05D006316 ORTHO05D008032 1.0e-56 224.2 254 48.8
ATR0796G033 Amborella trichopoda HOM05D006316 ORTHO05D008032 6.6e-56 221.5 218 50.9
Thecc.03G258800 Theobroma cacao HOM05D006316 ORTHO05D008032 6.6e-56 221.5 229 53.7
SHI09041 Sapria himalayana HOM05D006316 ORTHO05D008032 8.6e-56 221.1 203 57.6
Sabra10G0003500 Salix brachista HOM05D006316 ORTHO05D008032 4.3e-55 218.8 163 66.3
HPP92_002633 Vanilla planifolia HOM05D006316 ORTHO05D008032 1.7e-51 206.8 148 66.9
RcHm_v2.0_Chr4g0428001 Rosa chinensis HOM05D006316 ORTHO05D008032 3.7e-51 205.7 218 49.1
FvH4_4g21770 Fragaria vesca HOM05D006316 ORTHO05D008032 4.1e-50 202.2 218 48.6
AUR62023666 Chenopodium quinoa HOM05D006316 ORTHO05D008032 5.4e-50 201.8 290 43.4
FAN17G2953 Fragaria x ananassa HOM05D006316 ORTHO05D008032 1.2e-49 200.7 218 48.2
Zm00001eb354530 Zea mays HOM05D006316 ORTHO05D008032 2.7e-49 199.5 216 48.1
FAN12G0215 Fragaria x ananassa HOM05D006316 ORTHO05D008032 7.3e-47 191.4 141 61.7
Os02g0723700 Oryza sativa ssp. japonica HOM05D006316 ORTHO05D008032 9.5e-47 191.0 213 45.1
FAN07G2419 Fragaria x ananassa HOM05D006316 ORTHO05D008032 3.6e-46 189.1 140 61.4
Rhsim13G0235700 Rhododendron simsii HOM05D006316 ORTHO05D008032 3.4e-44 182.6 210 49.5
Prupe.1G208100 Prunus persica HOM05D006316 ORTHO05D008032 2.7e-41 172.9 188 49.5
Mapoly0059s0054 Marchantia polymorpha HOM05D006316 ORTHO05D008032 1.0e-40 171.0 172 50.6
Solyc11g013400.3 Solanum lycopersicum HOM05D006316 ORTHO05D008032 1.7e-40 170.2 139 62.6
SMO358G0571 Selaginella moellendorffii HOM05D006316 ORTHO05D008032 4.3e-39 165.6 185 46.5
Dinv32178 Davidia involucrata HOM05D006316 ORTHO05D008032 4.7e-38 162.2 103 75.7
TAR362G1307 Trochodendron aralioides HOM05D006316 ORTHO05D008032 4.7e-38 162.2 183 48.1
CBR_g38190 Chara braunii HOM05D006316 ORTHO05D008032 6.2e-38 161.8 217 39.2
AagrBONN_evm.TU.Sc2ySwM_228.3212 Anthoceros agrestis HOM05D006316 ORTHO05D008032 3.2e-34 149.4 213 38.5
Glyma.17G042702 Glycine max HOM05D006316 ORTHO05D008032 8.7e-32 141.4 112 64.3
Rhsim04G0168500 Rhododendron simsii HOM05D006316 ORTHO05D008032 1.8e-29 133.7 183 43.2
Rhsim04G0168300 Rhododendron simsii HOM05D006316 ORTHO05D008032 4.5e-28 129.0 138 50.7
SEGI_01321 Sequoiadendron giganteum HOM05D006316 ORTHO05D008032 1.9e-26 123.6 119 52.9
Solyc11g013410.2 Solanum lycopersicum HOM05D006316 ORTHO05D008032 1.8e-24 117.1 80 73.8
Cpa.g.sc146.8 Carica papaya HOM05D006316 ORTHO05D008032 7.4e-23 111.7 62 83.9
Glyma.09G159500 Glycine max HOM05D006316 ORTHO05D008032 1.6e-22 110.5 139 43.9
Cpa.g.c44700 Carica papaya HOM05D006316 ORTHO05D008032 3.4e-20 102.8 55 80.0
MBI18_g03841_MAGBIO Magnolia biondii HOM05D006046 ORTHO05D007580 1.7e-19 100.5 76 65.8
DCAR_030416 Daucus carota HOM05D006316 ORTHO05D008032 4.3e-15 85.9 98 45.9
Cfa025220 Carpinus fangiana HOM05D006316 ORTHO05D008032 4.5e-12 75.9 215 23.7
Ca_21361_v3 Cicer arietinum L. HOM05D006316 ORTHO05D008032 7.6e-12 75.1 108 42.6
RcHm_v2.0_Chr5g0025761 Rosa chinensis HOM05D006316 ORTHO05D008032 2.3e-08 63.5 66 47.0
PGSC0003DMG400027786 Solanum tuberosum HOM05D006316 ORTHO05D008032 4.8e-06 55.8 84 40.5


User provided reference genes

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