Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0021613 Lotus japonicus HOM05D007105 ORTHO05D009304 8.8e-41 169.9 86 100.0
Ca_25062_v3 Cicer arietinum L. HOM05D007105 ORTHO05D009304 7.2e-11 70.5 46 71.7
arahy.Tifrunner.gnm1.ann1.C0VXQN Arachis hypogaea HOM05D007105 ORTHO05D009304 1.2e-10 69.7 55 63.6
arahy.Tifrunner.gnm1.ann1.E4PV4B Arachis hypogaea HOM05D007105 ORTHO05D009304 1.2e-10 69.7 55 63.6
Phvul.002G123600 Phaseolus vulgaris HOM05D007105 ORTHO05D009304 2.8e-10 68.6 55 63.6
VMungo1215G3143 Vigna mungo HOM05D007105 ORTHO05D009304 3.6e-10 68.2 55 61.8
Medtr5g026030 Medicago truncatula HOM05D007105 ORTHO05D009304 1.8e-09 65.9 57 61.4
TPR.G35893 Trifolium pratense HOM05D007105 ORTHO05D009304 4.0e-09 64.7 62 56.5
Lj2g0014172 Lotus japonicus HOM05D007105 ORTHO05D009304 5.2e-09 64.3 56 62.5
Lalb_Chr05g0215271 Lupinus albus HOM05D007105 ORTHO05D009304 5.2e-09 64.3 55 60.0
TPR.G28495 Trifolium pratense HOM05D007105 ORTHO05D009304 5.2e-09 64.3 57 61.4
Sc22g0002220 Simmondsia chinensis HOM05D007105 ORTHO05D009304 6.8e-09 63.9 54 55.6
Psat2g144520 Pisum sativum HOM05D007105 ORTHO05D009304 1.5e-08 62.8 57 59.6
Hma1.2p1_0294F.1_g116480 Hydrangea macrophylla HOM05D007105 ORTHO05D009304 2.6e-08 62.0 55 54.5
Sed0004381 Sechium edule HOM05D007105 ORTHO05D009304 2.6e-08 62.0 54 59.3
QL12p002830 Quercus lobata HOM05D007105 ORTHO05D009304 4.4e-08 61.2 55 58.2
Potri.003G106300 Populus trichocarpa HOM05D007105 ORTHO05D009304 5.7e-08 60.8 55 58.2
Prupe.5G014800 Prunus persica HOM05D007105 ORTHO05D009304 7.5e-08 60.5 55 58.2
GSVIVG01036908001 Vitis vinifera HOM05D007105 ORTHO05D004932 7.5e-08 60.5 55 58.2
Dinv37443 Davidia involucrata HOM05D007105 ORTHO05D009304 9.8e-08 60.1 54 55.6
TPR.G38782 Trifolium pratense HOM05D007105 ORTHO05D009304 1.3e-07 59.7 57 57.9
CSS0008904 Camellia sinensis var. sinensis HOM05D007105 ORTHO05D009304 2.8e-07 58.5 55 56.4
CSS0044734 Camellia sinensis var. sinensis HOM05D007105 ORTHO05D009304 2.8e-07 58.5 55 56.4
Sabra03G0073100 Salix brachista HOM05D007105 ORTHO05D009304 2.8e-07 58.5 55 56.4
ClCG11G016210 Citrullus lanatus HOM05D007105 ORTHO05D009304 3.7e-07 58.2 55 56.4
Ciclev10004016m.g Citrus clementina HOM05D007105 ORTHO05D004932 4.9e-07 57.8 55 52.7
Cfa012630 Carpinus fangiana HOM05D007105 ORTHO05D009304 6.3e-07 57.4 55 56.4
RcHm_v2.0_Chr7g0215051 Rosa chinensis HOM05D007105 ORTHO05D009304 6.3e-07 57.4 55 56.4
Hund11072 Selenicereus undatus HOM05D007105 ORTHO05D009304 6.3e-07 57.4 61 54.1
Cpa.g.sc24.39 Carica papaya HOM05D007105 ORTHO05D009304 8.3e-07 57.0 55 54.5
Haze_08036 Corylus avellana HOM05D007105 ORTHO05D009304 8.3e-07 57.0 55 56.4
TAR375G0424 Trochodendron aralioides HOM05D007105 ORTHO05D009304 8.3e-07 57.0 36 72.2
Nitab4.5_0001159g0020 Nicotiana tabacum HOM05D007105 ORTHO05D009304 1.1e-06 56.6 34 73.5
Nitab4.5_0006955g0010 Nicotiana tabacum HOM05D007105 ORTHO05D009304 1.1e-06 56.6 34 73.5
PSO063G0027 Papaver somniferum HOM05D007105 ORTHO05D009304 1.1e-06 56.6 38 68.4
CsaV3_4G037900 Cucumis sativus L. HOM05D007105 ORTHO05D009304 1.4e-06 56.2 55 56.4
FAN13G0641 Fragaria x ananassa HOM05D007105 ORTHO05D009304 1.4e-06 56.2 55 56.4
MELO3C010538.2 Cucumis melo HOM05D007105 ORTHO05D009304 1.8e-06 55.8 54 57.4
FvH4_5g24670 Fragaria vesca HOM05D007105 ORTHO05D009304 1.8e-06 55.8 55 56.4
FAN08G0498 Fragaria x ananassa HOM05D007105 ORTHO05D009304 1.8e-06 55.8 55 56.4
FAN13G0608 Fragaria x ananassa HOM05D007105 ORTHO05D009304 1.8e-06 55.8 55 56.4
FAN18G4245 Fragaria x ananassa HOM05D007105 ORTHO05D009304 1.8e-06 55.8 55 56.4
FAN04G2788 Fragaria x ananassa HOM05D007105 ORTHO05D009304 2.4e-06 55.5 55 56.4
Peaxi162Scf00876g00218 Petunia axillaris HOM05D007105 ORTHO05D009304 2.4e-06 55.5 34 76.5
MD06G1012100 Malus domestica HOM05D007105 ORTHO05D009304 3.1e-06 55.1 54 55.6
Nn1g09319 Nelumbo nucifera HOM05D007105 ORTHO05D009304 3.1e-06 55.1 55 54.5
Solyc12g096230.2 Solanum lycopersicum HOM05D007105 ORTHO05D009304 3.1e-06 55.1 34 73.5
Sopen12g032090 Solanum pennellii HOM05D007105 ORTHO05D009304 3.1e-06 55.1 34 73.5
AT1G31600 Arabidopsis thaliana HOM05D007105 ORTHO05D009304 4.1e-06 54.7 56 55.4
CiPaw.11G077800 Carya illinoinensis HOM05D007105 ORTHO05D009304 5.4e-06 54.3 60 51.7
AUR62010501 Chenopodium quinoa HOM05D007105 ORTHO05D009304 5.4e-06 54.3 41 61.0
AUR62017399 Chenopodium quinoa HOM05D007105 ORTHO05D009304 5.4e-06 54.3 41 61.0
ATR0568G201 Amborella trichopoda HOM05D007105 ORTHO05D009304 7.0e-06 53.9 55 50.9
Duzib068G0877 Durio zibethinus HOM05D007105 ORTHO05D009304 7.0e-06 53.9 63 47.6
PGSC0003DMG400029377 Solanum tuberosum HOM05D007105 ORTHO05D009304 7.0e-06 53.9 34 70.6
AL1G49460 Arabidopsis lyrata HOM05D007105 ORTHO05D009304 9.2e-06 53.5 56 53.6
COL.COLO4_16732 Corchorus olitorius HOM05D007105 ORTHO05D009304 9.2e-06 53.5 55 50.9
Gohir.D12G203600 Gossypium hirsutum HOM05D007105 ORTHO05D009304 9.2e-06 53.5 55 56.4
Gorai.008G218400 Gossypium raimondii HOM05D007105 ORTHO05D009304 9.2e-06 53.5 55 56.4
Oeu047792.1 Olea europaea HOM05D007105 ORTHO05D009304 9.2e-06 53.5 46 54.3


User provided reference genes

Program Settings