Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 2.4e-288 995.0 555 100.0
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 7.1e-176 621.3 566 63.3
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 1.2e-175 620.5 564 64.4
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 1.6e-172 610.1 556 62.6
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 2.8e-172 609.4 565 60.2
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 4.8e-172 608.6 564 61.0
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 9.9e-170 600.9 561 63.1
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 3.5e-167 592.4 553 64.2
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 7.9e-167 591.3 561 61.1
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 1.3e-153 547.4 554 58.8
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 2.8e-148 529.6 567 57.3
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 2.6e-146 523.1 571 55.7
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 7.7e-146 521.5 567 56.4
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 9.4e-144 514.6 548 57.1
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 2.1e-143 513.5 572 57.7
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 7.9e-143 511.5 582 54.0
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 3.7e-140 502.7 571 53.4
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 5.3e-139 498.8 547 54.3
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 7.0e-139 498.4 563 51.7
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 5.0e-137 492.3 548 54.7
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 2.5e-136 490.0 567 51.5
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 3.2e-136 489.6 569 53.6
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 3.2e-136 489.6 565 52.7
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 4.2e-136 489.2 559 52.1
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 5.5e-136 488.8 558 54.1
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 1.2e-135 487.6 559 51.5
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.6e-135 487.3 568 51.6
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.4e-134 484.2 568 51.6
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 1.8e-134 483.8 568 53.2
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 5.2e-134 482.3 564 51.2
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 2.0e-133 480.3 545 52.5
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 2.6e-133 479.9 559 52.1
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 3.3e-133 479.6 539 51.4
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 7.4e-133 478.4 563 50.1
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 1.3e-132 477.6 568 50.7
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 3.7e-132 476.1 544 53.9
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 3.7e-132 476.1 568 54.4
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 6.3e-132 475.3 556 54.7
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 1.1e-131 474.6 580 50.2
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 1.4e-131 474.2 562 49.6
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 1.4e-131 474.2 569 50.6
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 7.0e-131 471.9 581 51.8
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 9.1e-131 471.5 571 52.2
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 1.2e-130 471.1 559 51.7
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 1.7e-129 467.2 565 48.5
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 1.1e-128 464.5 546 52.2
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 4.2e-128 462.6 548 52.9
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 5.5e-128 462.2 560 51.1
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 5.5e-128 462.2 548 52.6
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 4.0e-126 456.1 560 49.6
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 3.3e-125 453.0 571 51.3
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 6.3e-124 448.7 617 48.5
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 2.0e-122 443.7 546 46.9
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 5.0e-121 439.1 542 55.9
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 6.1e-119 432.2 569 48.9
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 4.0e-118 429.5 586 50.0
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 4.0e-118 429.5 547 47.0
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 1.5e-117 427.6 553 45.0
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 1.7e-116 424.1 546 45.4
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 3.7e-116 422.9 564 48.8
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 6.3e-116 422.2 561 48.3
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 8.3e-116 421.8 579 47.0
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 1.8e-115 420.6 556 49.8
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 7.0e-115 418.7 550 46.5
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 9.1e-115 418.3 488 51.4
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 1.6e-114 417.5 549 45.7
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 1.6e-114 417.5 584 45.2
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 2.7e-114 416.8 554 52.0
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 4.5e-114 416.0 550 46.0
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 5.9e-114 415.6 549 47.0
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 2.3e-113 413.7 549 46.1
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 2.9e-113 413.3 591 47.2
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 3.8e-113 412.9 526 45.1
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 6.6e-113 412.1 587 47.0
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 1.9e-112 410.6 551 44.8
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 3.3e-112 409.8 591 46.5
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 4.2e-112 409.5 577 48.5
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 7.2e-112 408.7 594 46.1
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 9.5e-112 408.3 570 48.9
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 2.1e-111 407.1 545 46.4
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 2.1e-111 407.1 559 45.4
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 4.7e-111 406.0 545 46.6
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 4.7e-111 406.0 539 45.5
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 4.7e-111 406.0 603 43.1
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 4.7e-111 406.0 536 48.5
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 8.0e-111 405.2 497 48.9
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 5.2e-110 402.5 603 43.4
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 6.8e-110 402.1 552 46.0
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 5.7e-109 399.1 561 48.1
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 7.5e-109 398.7 614 42.7
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 9.8e-109 398.3 571 48.2
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 7.0e-107 392.1 574 46.2
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 2.7e-106 390.2 589 43.8
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 1.3e-105 387.9 578 46.7
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.7e-105 387.5 451 49.2
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 2.3e-105 387.1 596 43.1
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 5.0e-105 386.0 579 43.7
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 5.6e-104 382.5 585 42.2
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 5.6e-104 382.5 572 44.2
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 9.5e-104 381.7 572 45.1
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 6.4e-100 369.0 522 50.8
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 1.5e-96 357.8 340 56.2
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 3.1e-94 350.1 582 41.1
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 5.4e-91 339.3 573 40.1
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 4.6e-90 336.3 487 41.9
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 3.0e-89 333.6 562 40.9
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 4.3e-88 329.7 566 41.9
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 5.6e-88 329.3 529 41.8
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 6.2e-87 325.9 319 53.3
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 1.2e-85 321.6 599 38.9
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 2.4e-83 313.9 470 43.4
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 1.7e-81 307.8 556 39.2
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 5.6e-80 302.8 733 33.7
AUR62033242 Chenopodium quinoa HOM05D008207 ORTHO05D010373 4.6e-74 283.1 448 43.8
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 6.0e-74 282.7 664 36.4
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 2.1e-63 247.7 650 35.4
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 1.5e-61 241.5 538 32.9
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 1.5e-61 241.5 563 33.0
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 9.3e-59 232.3 484 38.4
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 8.7e-57 225.7 280 45.7
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 6.9e-54 216.1 209 49.8
EL10Ac8g18309 Beta vulgaris HOM05D005537 ORTHO05D006776 4.9e-52 209.9 427 42.4
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 2.1e-50 204.5 685 27.7
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 1.0e-49 202.2 687 28.8
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 1.3e-49 201.8 540 32.4
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 2.8e-47 194.1 351 35.3
Glyma.17G055832 Glycine max HOM05D005537 ORTHO05D006776 2.7e-42 177.6 158 65.8
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 2.3e-41 174.5 176 51.7
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 2.0e-37 161.4 290 36.6
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 2.9e-36 157.5 479 26.1
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 7.2e-35 152.9 140 54.3
Oeu009853.2 Olea europaea HOM05D005537 ORTHO05D006776 1.4e-33 148.7 176 54.5
SEGI_03037 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 2.2e-28 131.3 584 25.2
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 1.2e-26 125.6 280 32.5
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 3.7e-23 114.0 134 47.8
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 1.3e-20 105.5 256 31.6
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 4.7e-18 97.1 177 35.6
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 7.4e-16 89.7 88 52.3
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 7.4e-16 89.7 88 52.3
unitig_746.g26560 Utricularia gibba HOM05D005537 ORTHO05D006776 2.4e-14 84.7 123 44.7
Cfa026542 Carpinus fangiana HOM05D005537 ORTHO05D124841 4.0e-09 67.4 108 41.7


User provided reference genes

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