Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0020887 Lotus japonicus HOM05D010736 ORTHO05D010111 2.3e-128 462.6 296 100.0
Glyma.11G084900 Glycine max HOM05D010736 ORTHO05D010111 8.8e-24 115.2 166 44.0
Ca_24971_v3 Cicer arietinum L. HOM05D010736 ORTHO05D010111 4.4e-23 112.8 184 39.7
Phvul.002G115500 Phaseolus vulgaris HOM05D010736 ORTHO05D010111 1.7e-22 110.9 156 43.6
VMungo1215G0851 Vigna mungo HOM05D010736 ORTHO05D010111 2.4e-21 107.1 163 42.9
arahy.Tifrunner.gnm1.ann1.62X1XK Arachis hypogaea HOM05D010736 ORTHO05D010111 2.7e-20 103.6 149 40.9
arahy.Tifrunner.gnm1.ann1.IS160S Arachis hypogaea HOM05D010736 ORTHO05D010111 2.7e-20 103.6 149 40.9
Psat2g149320 Pisum sativum HOM05D010736 ORTHO05D010111 1.0e-19 101.7 277 32.9
Psat0s1262g0120 Pisum sativum HOM05D010736 ORTHO05D010111 4.2e-18 96.3 277 32.1
arahy.Tifrunner.gnm1.ann1.JYQV5P Arachis hypogaea HOM05D010736 ORTHO05D010111 1.2e-17 94.7 57 64.9
arahy.Tifrunner.gnm1.ann1.KB9TDA Arachis hypogaea HOM05D010736 ORTHO05D010111 1.2e-17 94.7 57 64.9
Ca_24970_v3 Cicer arietinum L. HOM05D010736 ORTHO05D010111 8.0e-17 92.0 179 39.7
Medtr5g023910 Medicago truncatula HOM05D010736 ORTHO05D010111 1.8e-16 90.9 168 40.5
TPR.G8374 Trifolium pratense HOM05D010736 ORTHO05D010111 4.9e-14 82.8 155 37.4
TPR.G8399 Trifolium pratense HOM05D013440 ORTHO05D013937 8.3e-14 82.0 152 40.1
Lalb_Chr09g0321241 Lupinus albus HOM05D010736 ORTHO05D010111 7.0e-13 79.0 157 38.2
Thhalv10026068m.g Eutrema salsugineum HOM05D008569 ORTHO05D010111 5.0e-11 72.8 132 37.9
CARHR243950 Cardamine hirsuta HOM05D008569 ORTHO05D010111 1.1e-10 71.6 88 45.5
Carub.0007s0469 Capsella rubella HOM05D008569 ORTHO05D010111 1.5e-10 71.2 175 33.7
Sp7g33380 Schrenkiella parvula HOM05D008569 ORTHO05D010111 2.5e-10 70.5 183 32.8
THA.LOC104820185 Tarenaya hassleriana HOM05D008569 ORTHO05D010111 4.3e-10 69.7 155 32.9
A01p02990 Brassica napus HOM05D008569 ORTHO05D010111 1.2e-09 68.2 67 46.3
BraA01t00282Z Brassica rapa HOM05D008569 ORTHO05D010111 1.2e-09 68.2 67 46.3
Haze_03671 Corylus avellana HOM05D008569 ORTHO05D010111 1.6e-09 67.8 141 35.5
Psat0s1262g0240 Pisum sativum HOM05D010736 ORTHO05D010111 2.8e-09 67.0 257 28.0
C01p03370 Brassica napus HOM05D008569 ORTHO05D010111 4.7e-09 66.2 53 49.1
BolC1t00322H Brassica oleracea HOM05D008569 ORTHO05D010111 4.7e-09 66.2 53 49.1
Cfa007069 Carpinus fangiana HOM05D008569 ORTHO05D010111 4.7e-09 66.2 141 36.2
QL06p052831 Quercus lobata HOM05D008569 ORTHO05D010111 1.4e-08 64.7 71 43.7
THA.LOC104820184 Tarenaya hassleriana HOM05D008569 ORTHO05D010111 1.4e-08 64.7 156 32.1
AT4G35610 Arabidopsis thaliana HOM05D008569 ORTHO05D010111 2.3e-08 63.9 162 32.7
C01p03340 Brassica napus HOM05D008569 ORTHO05D010111 3.0e-08 63.5 165 30.3
BolC1t00319H Brassica oleracea HOM05D008569 ORTHO05D010111 3.0e-08 63.5 165 30.3
BcaNung03648 Brassica carinata HOM05D008569 ORTHO05D010111 4.0e-08 63.2 160 31.9
CsaV3_3G000220 Cucumis sativus L. HOM05D008569 ORTHO05D010111 4.0e-08 63.2 174 32.8
AT4G35700 Arabidopsis thaliana HOM05D008569 ORTHO05D010111 5.2e-08 62.8 64 43.8
MELO3C013717.2 Cucumis melo HOM05D008569 ORTHO05D010111 5.2e-08 62.8 174 32.8
Lj2g0022601 Lotus japonicus HOM05D010736 ORTHO05D236921 5.2e-08 62.8 242 32.2
AL7G15420 Arabidopsis lyrata HOM05D008569 ORTHO05D010111 6.8e-08 62.4 70 42.9
Sed0003917 Sechium edule HOM05D008569 ORTHO05D010111 6.8e-08 62.4 124 34.7
AL7G15540 Arabidopsis lyrata HOM05D008569 ORTHO05D010111 8.9e-08 62.0 170 32.9
QL06p053745 Quercus lobata HOM05D008569 ORTHO05D010111 8.9e-08 62.0 71 43.7
Manes.02G113100 Manihot esculenta HOM05D008569 ORTHO05D010111 2.0e-07 60.8 47 48.9
Carub.0007s0458 Capsella rubella HOM05D008569 ORTHO05D010111 2.6e-07 60.5 122 32.8
CiPaw.07G003700 Carya illinoinensis HOM05D008569 ORTHO05D010111 3.4e-07 60.1 196 31.1
MELO3C007971.2 Cucumis melo HOM05D008569 ORTHO05D010111 3.4e-07 60.1 98 35.7
Lalb_Chr05g0211881 Lupinus albus HOM05D010736 ORTHO05D010111 3.4e-07 60.1 54 50.0
Thhalv10023161m.g Eutrema salsugineum HOM05D008569 ORTHO05D010111 4.4e-07 59.7 59 44.1
ClCG01G020850 Citrullus lanatus HOM05D008569 ORTHO05D010111 9.8e-07 58.5 101 35.6
CsaV3_6G047820 Cucumis sativus L. HOM05D008569 ORTHO05D010111 9.8e-07 58.5 121 34.7
Thhalv10026930m.g Eutrema salsugineum HOM05D008569 ORTHO05D010111 1.7e-06 57.8 187 29.4
Prupe.7G181100 Prunus persica HOM05D008569 ORTHO05D010111 1.7e-06 57.8 50 48.0
PGR102G2978 Punica granatum HOM05D008569 ORTHO05D010111 1.7e-06 57.8 141 31.9
BcaNung03645 Brassica carinata HOM05D008569 ORTHO05D010111 2.2e-06 57.4 156 29.5
A01p03020 Brassica napus HOM05D008569 ORTHO05D010111 2.2e-06 57.4 161 29.8
BraA01t00284Z Brassica rapa HOM05D008569 ORTHO05D010111 2.2e-06 57.4 161 29.8
AL7G15890 Arabidopsis lyrata HOM05D000174 ORTHO05D001526 3.7e-06 56.6 65 41.5
Zm00001eb033660 Zea mays HOM05D000174 ORTHO05D001526 3.7e-06 56.6 51 43.1
ClCG10G000200 Citrullus lanatus HOM05D008569 ORTHO05D010111 4.9e-06 56.2 174 31.6
Thecc.01G006600 Theobroma cacao HOM05D019103 ORTHO05D010111 4.9e-06 56.2 76 39.5
Lj8C183G11 Lonicera japonica HOM05D000174 ORTHO05D000630 6.4e-06 55.8 56 44.6
CAN.G62.50 Capsicum annuum HOM05D000174 ORTHO05D001526 8.3e-06 55.5 72 40.3
Prupe.6G035400 Prunus persica HOM05D000174 ORTHO05D000630 8.3e-06 55.5 61 44.3


User provided reference genes

Program Settings