Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0017040 Lotus japonicus HOM05D005762 ORTHO05D006823 1.7e-100 369.4 190 100.0
Lj2g0011355 Lotus japonicus HOM05D005762 ORTHO05D006823 1.1e-80 303.5 179 89.9
Lalb_Chr16g0380631 Lupinus albus HOM05D005762 ORTHO05D006823 2.0e-69 266.2 179 80.4
arahy.Tifrunner.gnm1.ann1.0D8FTQ Arachis hypogaea HOM05D005762 ORTHO05D006823 5.8e-69 264.6 177 80.8
arahy.Tifrunner.gnm1.ann1.3SV7H4 Arachis hypogaea HOM05D005762 ORTHO05D006823 8.4e-68 260.8 177 79.7
Lalb_Chr05g0215351 Lupinus albus HOM05D005762 ORTHO05D006823 3.2e-67 258.8 179 77.1
VMungo1215G2009 Vigna mungo HOM05D005762 ORTHO05D006823 4.1e-67 258.5 181 76.2
Phvul.004G044600 Phaseolus vulgaris HOM05D005762 ORTHO05D006823 2.5e-64 249.2 180 74.4
Glyma.19G036900 Glycine max HOM05D005762 ORTHO05D006823 3.6e-63 245.4 180 75.6
Prupe.7G266400 Prunus persica HOM05D005762 ORTHO05D006823 2.2e-60 236.1 179 72.1
Sed0006648 Sechium edule HOM05D005762 ORTHO05D006823 1.0e-57 227.3 182 70.3
ClCG06G012630 Citrullus lanatus HOM05D005762 ORTHO05D006823 1.3e-57 226.9 181 71.3
Gohir.A12G083500 Gossypium hirsutum HOM05D005762 ORTHO05D006823 4.3e-56 221.9 178 68.0
COL.COLO4_27292 Corchorus olitorius HOM05D005762 ORTHO05D006823 8.1e-55 217.6 183 65.6
Manes.14G112900 Manihot esculenta HOM05D005762 ORTHO05D006823 1.1e-54 217.2 178 65.2
Sed0007428 Sechium edule HOM05D005762 ORTHO05D006823 1.4e-54 216.9 181 68.0
TWI34G1522 Tripterygium wilfordii HOM05D005762 ORTHO05D006823 1.4e-54 216.9 178 68.0
Psat1g057520 Pisum sativum HOM05D005762 ORTHO05D006823 1.8e-54 216.5 179 70.9
Eucgr.C02513 Eucalyptus grandis HOM05D005762 ORTHO05D006823 2.4e-54 216.1 179 69.8
Eucgr.L01546 Eucalyptus grandis HOM05D005762 ORTHO05D006823 2.4e-54 216.1 179 69.8
Duzib147G0575 Durio zibethinus HOM05D005762 ORTHO05D006823 3.1e-54 215.7 182 66.5
Hma1.2p1_0222F.1_g093870 Hydrangea macrophylla HOM05D005762 ORTHO05D006823 6.9e-54 214.5 178 65.2
Gohir.D12G082500 Gossypium hirsutum HOM05D005762 ORTHO05D006823 1.2e-53 213.8 179 66.5
Gorai.008G090500 Gossypium raimondii HOM05D005762 ORTHO05D006823 1.2e-53 213.8 179 67.0
Dinv42823 Davidia involucrata HOM05D005762 ORTHO05D006823 3.4e-53 212.2 178 65.2
Dinv43277 Davidia involucrata HOM05D005762 ORTHO05D006823 3.4e-53 212.2 178 65.2
Thecc.01G095900 Theobroma cacao HOM05D005762 ORTHO05D006823 3.4e-53 212.2 182 65.9
Haze_19144 Corylus avellana HOM05D005762 ORTHO05D006823 5.8e-53 211.5 180 65.6
TAR625G0504 Trochodendron aralioides HOM05D005762 ORTHO05D006823 5.8e-53 211.5 183 63.4
TWI63G0575 Tripterygium wilfordii HOM05D005762 ORTHO05D006823 1.7e-52 209.9 179 65.4
Atru.chr7.1163 Acer truncatum HOM05D005762 ORTHO05D006823 3.8e-52 208.8 179 65.9
MELO3C010201.2 Cucumis melo HOM05D005762 ORTHO05D006823 6.4e-52 208.0 181 67.4
GSVIVG01023684001 Vitis vinifera HOM05D005762 ORTHO05D006823 1.4e-51 206.8 178 64.0
Nitab4.5_0000032g0060 Nicotiana tabacum HOM05D005762 ORTHO05D006823 2.7e-50 202.6 180 65.6
PSO761G0310 Papaver somniferum HOM05D005762 ORTHO05D006823 3.5e-50 202.2 180 63.3
Aqoxy6G02656 Aquilegia oxysepala HOM05D005762 ORTHO05D006823 7.9e-50 201.1 181 64.1
Medtr6g006900 Medicago truncatula HOM05D005762 ORTHO05D006823 7.9e-50 201.1 177 64.4
Ca_04188_v3 Cicer arietinum L. HOM05D005762 ORTHO05D006823 1.7e-49 199.9 178 66.9
TPR.G14135 Trifolium pratense HOM05D005762 ORTHO05D006823 1.7e-49 199.9 177 63.3
CSS0036647 Camellia sinensis var. sinensis HOM05D005762 ORTHO05D006823 2.3e-49 199.5 184 61.4
HPP92_021390 Vanilla planifolia HOM05D005762 ORTHO05D006823 2.3e-49 199.5 189 59.8
MBI02_g32399_MAGBIO Magnolia biondii HOM05D005762 ORTHO05D006823 5.1e-49 198.4 187 60.4
Sopen04g027270 Solanum pennellii HOM05D005762 ORTHO05D006823 6.6e-49 198.0 181 64.1
PGSC0003DMG400024111 Solanum tuberosum HOM05D005762 ORTHO05D006823 8.7e-49 197.6 181 64.1
CiPaw.16G107100 Carya illinoinensis HOM05D005762 ORTHO05D006823 1.1e-48 197.2 179 63.1
ATR0767G248 Amborella trichopoda HOM05D005762 ORTHO05D006823 1.5e-48 196.8 182 58.8
Rhsim01G0024500 Rhododendron simsii HOM05D005762 ORTHO05D006823 1.5e-48 196.8 184 62.0
MSTRG.25456 Avicennia marina HOM05D005762 ORTHO05D006823 2.5e-48 196.1 182 61.0
Solyc04g071310.3 Solanum lycopersicum HOM05D005762 ORTHO05D006823 3.3e-48 195.7 181 63.5
Nn8g40046 Nelumbo nucifera HOM05D005762 ORTHO05D006823 4.3e-48 195.3 171 66.1
HanXRQChr09g0244521 Helianthus annuus HOM05D005762 ORTHO05D006823 1.3e-47 193.7 182 61.0
CAN.G268.6 Capsicum annuum HOM05D005762 ORTHO05D006823 1.4e-46 190.3 181 62.4
MD15G1148500 Malus domestica HOM05D005762 ORTHO05D006823 1.8e-46 189.9 188 59.6
HanXRQChr03g0066031 Helianthus annuus HOM05D005762 ORTHO05D006823 2.4e-46 189.5 183 60.1
Sabra18G0088700 Salix brachista HOM05D000058 ORTHO05D000077 3.1e-46 189.1 188 58.5
Lsat_1_v5_gn_7_49601 Lactuca sativa HOM05D005762 ORTHO05D006823 4.0e-46 188.7 183 60.1
PSO357G0319 Papaver somniferum HOM05D005762 ORTHO05D006823 4.0e-46 188.7 180 60.0
Peaxi162Scf00765g00313 Petunia axillaris HOM05D005762 ORTHO05D006823 5.3e-46 188.3 187 62.0
QL02p094110 Quercus lobata HOM05D005762 ORTHO05D006823 1.2e-45 187.2 179 58.1
SalBow7G3475 Salvia bowleyana HOM05D005762 ORTHO05D006823 1.2e-45 187.2 181 61.3
Potri.006G180900 Populus trichocarpa HOM05D005762 ORTHO05D006823 1.5e-45 186.8 177 61.0
PGR102G1062 Punica granatum HOM05D005762 ORTHO05D006823 1.5e-45 186.8 177 59.3
Cc00_g06610 Coffea canephora HOM05D005762 ORTHO05D006823 2.0e-45 186.4 181 59.1
FvH4_1g00560 Fragaria vesca HOM05D005762 ORTHO05D006823 2.6e-45 186.0 177 61.6
Sabra06G0137900 Salix brachista HOM05D005762 ORTHO05D006823 5.8e-45 184.9 180 60.0
PSO170G6399 Papaver somniferum HOM05D005762 ORTHO05D006823 7.6e-45 184.5 180 58.9
SGA_v2.0_scaffold118G32537 Striga asiatica HOM05D005762 ORTHO05D006823 7.6e-45 184.5 181 60.2
Migut.C01281 Erythranthe guttata HOM05D005762 ORTHO05D006823 8.4e-44 181.0 178 58.4
FAN26G0640 Fragaria x ananassa HOM05D005762 ORTHO05D006823 8.4e-44 181.0 177 60.5
Os11g0473100 Oryza sativa ssp. japonica HOM05D005762 ORTHO05D006823 1.1e-43 180.6 179 57.5
Ciclev10009604m.g Citrus clementina HOM05D005762 ORTHO05D006823 1.4e-43 180.3 180 58.9
DCAR_014801 Daucus carota HOM05D005762 ORTHO05D006823 1.9e-43 179.9 178 57.9
THA.LOC104814737 Tarenaya hassleriana HOM05D005762 ORTHO05D006823 5.5e-43 178.3 179 57.0
Os06g0171700 Oryza sativa ssp. japonica HOM05D005762 ORTHO05D006823 7.1e-43 177.9 187 55.6
unitig_0.g206 Utricularia gibba HOM05D005762 ORTHO05D006823 1.2e-42 177.2 178 55.6
DCAR_019992 Daucus carota HOM05D005762 ORTHO05D006823 2.1e-42 176.4 180 55.0
Actinidia24370 Actinidia chinensis HOM05D000058 ORTHO05D000077 2.7e-42 176.0 182 58.2
Cpa.g.sc199.22 Carica papaya HOM05D005762 ORTHO05D006823 6.0e-42 174.9 180 56.7
Potri.018G103200 Populus trichocarpa HOM05D005762 ORTHO05D006823 6.0e-42 174.9 179 58.7
RcHm_v2.0_Chr2g0085191 Rosa chinensis HOM05D005762 ORTHO05D006823 1.0e-41 174.1 177 58.8
SEGI_01916 Sequoiadendron giganteum HOM05D005762 ORTHO05D006823 2.3e-41 172.9 177 55.4
CDE02G2562 Ceratophyllum demersum HOM05D005762 ORTHO05D006823 3.0e-41 172.6 183 54.6
Dinv41344 Davidia involucrata HOM05D005762 ORTHO05D006823 3.9e-41 172.2 155 62.6
Zm00001eb215170 Zea mays HOM05D005762 ORTHO05D006823 8.7e-41 171.0 182 54.9
Zm00001eb375400 Zea mays HOM05D005762 ORTHO05D006823 8.7e-41 171.0 182 54.9
BcaB03g12662 Brassica carinata HOM05D005762 ORTHO05D006823 1.1e-40 170.6 178 53.9
vmacro06054 Vaccinium macrocarpon HOM05D005762 ORTHO05D006823 1.5e-40 170.2 178 55.6
CDE06G1965 Ceratophyllum demersum HOM05D005762 ORTHO05D006823 3.3e-40 169.1 181 55.2
unitig_60.g25712 Utricularia gibba HOM05D005762 ORTHO05D006823 3.3e-40 169.1 177 53.1
CANSAT11G0529 Cannabis sativa HOM05D005762 ORTHO05D006823 9.6e-40 167.5 180 54.4
Sp7g28690 Schrenkiella parvula HOM05D005762 ORTHO05D006823 1.6e-39 166.8 199 50.3
CARHR238660 Cardamine hirsuta HOM05D005762 ORTHO05D006823 9.0e-38 161.0 205 47.3
Lj9A721G60 Lonicera japonica HOM05D005762 ORTHO05D006823 9.0e-38 161.0 158 60.8
SHI02837 Sapria himalayana HOM05D005762 ORTHO05D006823 2.6e-37 159.5 198 51.5
CSS0014952 Camellia sinensis var. sinensis HOM05D005762 ORTHO05D006823 3.4e-37 159.1 177 52.5
BcaNung02738 Brassica carinata HOM05D005762 ORTHO05D006823 5.8e-37 158.3 181 49.7
AT4G30820 Arabidopsis thaliana HOM05D005762 ORTHO05D006823 7.6e-37 157.9 178 51.7
SGA_v2.0_scaffold69G23111 Striga asiatica HOM05D005762 ORTHO05D006823 1.7e-36 156.8 169 56.2
Mapoly0025s0086 Marchantia polymorpha HOM05D005762 ORTHO05D006823 7.1e-35 151.4 182 48.4
Sc18g0003110 Simmondsia chinensis HOM05D005762 ORTHO05D006823 7.1e-35 151.4 158 57.6
ECA240G2400 Erigeron canadensis HOM05D006258 ORTHO05D007961 9.3e-35 151.0 165 53.3
AagrBONN_evm.TU.Sc2ySwM_344.3285 Anthoceros agrestis HOM05D005762 ORTHO05D006823 1.6e-34 150.2 190 47.9
Carub.0007s0975 Capsella rubella HOM05D005762 ORTHO05D006823 2.3e-33 146.4 178 51.1
BraA08t33867Z Brassica rapa HOM05D005762 ORTHO05D006823 1.5e-32 143.7 179 48.6
C03p88490 Brassica napus HOM05D005762 ORTHO05D006823 2.5e-32 142.9 177 48.0
Rhsim03G0259100 Rhododendron simsii HOM05D005762 ORTHO05D006823 2.5e-32 142.9 156 53.2
Pp3c7_18190 Physcomitrium patens HOM05D005762 ORTHO05D006823 9.6e-32 141.0 182 48.4
SMO356G0316 Selaginella moellendorffii HOM05D005762 ORTHO05D006823 9.6e-32 141.0 181 46.4
BcaC01g01136 Brassica carinata HOM05D005762 ORTHO05D006823 4.1e-30 135.6 178 46.6
Cfa020788 Carpinus fangiana HOM05D005762 ORTHO05D006823 5.9e-29 131.7 121 61.2
BcaNung01558 Brassica carinata HOM05D005762 ORTHO05D006823 1.0e-28 131.0 187 44.4
THA.LOC104804493 Tarenaya hassleriana HOM05D005762 ORTHO05D006823 1.7e-28 130.2 149 52.3
A08p19060 Brassica napus HOM05D005762 ORTHO05D006823 2.9e-28 129.4 207 42.0
BraA03t15075Z Brassica rapa HOM05D005762 ORTHO05D006823 1.9e-27 126.7 178 42.7
Thhalv10026542m.g Eutrema salsugineum HOM05D005762 ORTHO05D006823 1.9e-27 126.7 155 50.3
C07p58230 Brassica napus HOM05D000058 ORTHO05D000077 2.5e-27 126.3 199 41.7
BolC7t46281H Brassica oleracea HOM05D000058 ORTHO05D000077 2.5e-27 126.3 199 41.7
A03p60360 Brassica napus HOM05D005762 ORTHO05D006823 3.5e-26 122.5 198 39.9
AL7G21310 Arabidopsis lyrata HOM05D005762 ORTHO05D006823 7.9e-26 121.3 157 49.7
Oeu026957.1 Olea europaea HOM05D005762 ORTHO05D006823 5.1e-25 118.6 85 74.1
vmacro13053 Vaccinium macrocarpon HOM05D005762 ORTHO05D006823 1.9e-24 116.7 73 82.2
CBR_g45648 Chara braunii HOM05D005762 ORTHO05D006823 1.4e-22 110.5 186 43.0
BolC3t21157H Brassica oleracea HOM05D005762 ORTHO05D006823 5.9e-21 105.1 165 42.4
CsaV3_1G029180 Cucumis sativus L. HOM05D005762 ORTHO05D006823 5.9e-21 105.1 67 77.6
Dinv09756 Davidia involucrata HOM05D000667 ORTHO05D002614 1.3e-20 104.0 77 64.9
AUR62025367 Chenopodium quinoa HOM05D005762 ORTHO05D006823 1.2e-18 97.4 60 81.7
EL10Ac8g18914 Beta vulgaris HOM05D005762 ORTHO05D006823 1.6e-18 97.1 60 80.0
AUR62028383 Chenopodium quinoa HOM05D005762 ORTHO05D006823 2.7e-18 96.3 60 80.0
Nitab4.5_0008759g0010 Nicotiana tabacum HOM05D005762 ORTHO05D006823 2.7e-18 96.3 84 64.3
SGA_v2.0_scaffold63G21769 Striga asiatica HOM05D005762 ORTHO05D006823 2.3e-17 93.2 82 61.0
vmacro13054 Vaccinium macrocarpon HOM05D006258 ORTHO05D007961 3.0e-17 92.8 76 65.8
CBR_g3032 Chara braunii HOM05D005762 ORTHO05D006823 5.7e-16 88.6 67 67.2
PSO357G0231 Papaver somniferum HOM05D005762 ORTHO05D006823 1.1e-14 84.3 143 41.3
Oeu064081.1 Olea europaea HOM05D005762 ORTHO05D006823 2.4e-14 83.2 71 67.6
SMO004G0001 Selaginella moellendorffii HOM05D028982 ORTHO05D006823 5.9e-13 78.6 61 62.3
Aa31LG2G19570 Aethionema arabicum HOM05D005762 ORTHO05D006823 2.1e-10 70.1 62 58.1
MCO02G015 Micromonas commoda HOM05D005762 ORTHO05D006823 2.7e-10 69.7 72 54.2
Rhsim01G0060600 Rhododendron simsii HOM05D005762 ORTHO05D006823 1.4e-09 67.4 85 54.1
MD02G1004700 Malus domestica HOM05D005762 ORTHO05D006823 5.7e-08 62.0 54 61.1
Cre16.g672753 Chlamydomonas reinhardtii HOM05D005762 ORTHO05D006823 3.1e-06 56.2 184 28.3


User provided reference genes

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