Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 6.7e-139 497.3 240 100.0
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 8.0e-92 340.9 241 69.7
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 3.4e-90 335.5 241 69.3
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 5.7e-90 334.7 240 66.7
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 1.3e-89 333.6 240 66.7
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 3.7e-89 332.0 244 64.8
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 5.4e-88 328.2 235 68.1
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 3.5e-87 325.5 241 65.6
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 1.6e-84 316.6 245 64.5
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 2.1e-84 316.2 239 64.0
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 1.8e-83 313.2 236 66.5
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 8.9e-83 310.8 241 61.8
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 3.7e-81 305.4 240 64.2
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 8.3e-81 304.3 207 71.0
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 3.9e-70 268.9 175 72.0
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 7.1e-56 221.5 203 49.3
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 7.1e-56 221.5 203 49.3
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 7.1e-56 221.5 204 51.5
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 2.7e-55 219.5 247 42.9
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 1.7e-54 216.9 217 48.8
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 1.1e-53 214.2 214 49.1
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 3.3e-53 212.6 248 45.2
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 3.3e-53 212.6 209 48.3
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 4.3e-53 212.2 217 45.6
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 4.3e-53 212.2 227 46.3
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 5.6e-53 211.8 194 51.5
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 7.3e-53 211.5 243 43.2
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 6.2e-52 208.4 194 48.5
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 1.1e-51 207.6 199 46.7
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 2.4e-51 206.5 204 48.5
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 2.4e-51 206.5 204 48.5
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 4.0e-51 205.7 202 48.0
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 1.5e-50 203.8 196 49.5
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 2.0e-50 203.4 192 49.0
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 2.6e-50 203.0 203 47.8
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 4.5e-50 202.2 203 47.3
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 4.5e-50 202.2 203 47.3
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 9.9e-50 201.1 194 47.4
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 8.4e-49 198.0 222 44.6
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 1.9e-48 196.8 247 41.7
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 5.4e-48 195.3 230 43.5
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 5.4e-48 195.3 198 44.9
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 9.3e-48 194.5 195 47.7
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 3.5e-47 192.6 194 46.4
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 6.0e-47 191.8 180 49.4
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 6.0e-47 191.8 198 43.9
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 6.0e-47 191.8 192 44.8
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 7.9e-47 191.4 198 43.9
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 1.3e-46 190.7 198 43.4
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 2.3e-46 189.9 195 47.7
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 3.0e-46 189.5 194 44.3
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 3.0e-46 189.5 229 41.9
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.1e-45 187.6 194 47.9
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 1.9e-45 186.8 195 45.6
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 1.9e-45 186.8 190 45.3
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 1.9e-45 186.8 190 45.3
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 4.3e-45 185.7 196 44.9
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 9.6e-45 184.5 240 39.2
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 1.3e-44 184.1 194 43.3
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 1.6e-44 183.7 194 42.8
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 1.6e-44 183.7 194 43.3
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 2.8e-44 183.0 198 43.4
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 2.8e-44 183.0 194 43.8
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 3.7e-44 182.6 197 46.2
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 6.2e-44 181.8 196 41.8
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 8.1e-44 181.4 194 42.8
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 8.1e-44 181.4 194 42.8
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 8.1e-44 181.4 195 44.1
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 1.1e-43 181.0 211 42.7
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 1.4e-43 180.6 190 45.3
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 2.4e-43 179.9 194 44.3
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 2.4e-43 179.9 193 43.5
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 4.0e-43 179.1 194 44.3
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 4.0e-43 179.1 186 45.2
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 4.0e-43 179.1 199 42.2
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 5.3e-43 178.7 194 43.8
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 6.9e-43 178.3 194 43.8
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 6.9e-43 178.3 194 43.8
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 6.9e-43 178.3 196 43.9
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 9.0e-43 177.9 194 43.3
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 1.2e-42 177.6 195 43.1
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 2.0e-42 176.8 209 41.1
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 3.4e-42 176.0 194 43.3
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 3.4e-42 176.0 163 48.5
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 4.5e-42 175.6 236 37.3
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 5.8e-42 175.3 192 43.8
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 9.9e-42 174.5 192 44.3
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 1.3e-41 174.1 175 45.1
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 2.2e-41 173.3 190 44.7
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 2.2e-41 173.3 238 39.1
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 2.9e-41 172.9 196 41.3
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 2.9e-41 172.9 224 40.6
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 4.9e-41 172.2 212 36.8
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 4.9e-41 172.2 224 40.2
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 8.4e-41 171.4 211 39.8
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 1.4e-40 170.6 198 39.9
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 1.4e-40 170.6 233 42.1
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.9e-40 170.2 198 40.9
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 9.3e-40 167.9 197 40.6
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 2.1e-39 166.8 171 49.7
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 2.1e-39 166.8 212 35.4
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 2.7e-39 166.4 212 36.3
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 3.5e-39 166.0 184 42.4
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 6.0e-39 165.2 213 39.4
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 1.3e-38 164.1 207 36.7
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 2.3e-38 163.3 228 39.0
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 3.0e-38 162.9 229 38.4
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 5.1e-38 162.2 162 46.3
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 5.1e-38 162.2 209 35.4
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 6.7e-38 161.8 204 39.7
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 1.1e-37 161.0 208 39.4
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 1.1e-37 161.0 215 36.3
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 1.5e-37 160.6 240 35.8
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 4.3e-37 159.1 233 38.2
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 5.6e-37 158.7 201 40.8
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 7.4e-37 158.3 149 49.0
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 7.4e-37 158.3 202 39.6
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 1.6e-36 157.1 201 41.3
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 3.7e-36 156.0 194 43.3
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 8.2e-36 154.8 206 37.4
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 1.4e-35 154.1 191 37.7
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 1.4e-35 154.1 192 37.5
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 4.5e-34 149.1 157 46.5
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 7.6e-34 148.3 204 37.3
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 7.6e-34 148.3 148 46.6
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 7.6e-34 148.3 174 42.0
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 1.3e-33 147.5 148 46.6
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 1.4e-32 144.1 193 37.3
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 3.2e-32 142.9 223 32.3
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 3.2e-32 142.9 212 37.7
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 5.5e-32 142.1 195 40.0
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 7.1e-32 141.7 157 44.6
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.2e-31 141.0 210 34.8
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 3.9e-30 136.0 139 45.3
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 6.7e-30 135.2 139 46.0
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 6.7e-30 135.2 192 36.5
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 5.7e-29 132.1 119 47.1
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 1.6e-28 130.6 216 34.3
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.6e-28 130.6 228 34.2
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 2.2e-28 130.2 220 33.6
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 1.8e-27 127.1 198 34.8
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 2.9e-25 119.8 187 32.6
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 1.1e-24 117.9 146 40.4
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 1.8e-22 110.5 111 43.2
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 2.5e-21 106.7 164 34.8
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 9.7e-21 104.8 165 32.1
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 5.3e-19 99.0 198 30.3
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 3.4e-18 96.3 213 26.3
CsaV3_3G041190 Cucumis sativus L. HOM05D004214 ORTHO05D004963 5.9e-18 95.5 193 30.6
Gohir.D11G074550 Gossypium hirsutum HOM05D004214 ORTHO05D004963 1.3e-17 94.4 117 41.0
Gorai.007G080000 Gossypium raimondii HOM05D004214 ORTHO05D004963 1.7e-17 94.0 117 41.0
MELO3C009848.2 Cucumis melo HOM05D004214 ORTHO05D004963 5.0e-17 92.4 259 26.6
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 6.5e-17 92.0 82 50.0
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 2.1e-15 87.0 174 28.7
PRCOL_00004285 Prasinoderma coloniale HOM05D004214 ORTHO05D004963 9.7e-13 78.2 178 27.5
Sabra17G0077200 Salix brachista HOM05D004214 ORTHO05D004963 1.4e-11 74.3 96 38.5
C06p18570 Brassica napus HOM05D004214 ORTHO05D004963 1.4e-08 64.3 83 38.6
Lj1g0021452 Lotus japonicus HOM05D004214 ORTHO05D004963 4.2e-08 62.8 49 59.2
Lj3A350G16 Lonicera japonica HOM05D004214 ORTHO05D004963 5.5e-08 62.4 61 47.5
Lj3A364T22 Lonicera japonica HOM05D004214 ORTHO05D004963 1.4e-06 57.8 72 38.9


User provided reference genes

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