Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0016635 Lotus japonicus HOM05D004594 ORTHO05D005225 0.0e+00 2152.9 1444 100.0
Ca_04825_v3 Cicer arietinum L. HOM05D004594 ORTHO05D005225 0.0e+00 1485.7 1467 68.8
Glyma.02G109900 Glycine max HOM05D004594 ORTHO05D005225 0.0e+00 1482.6 1465 71.3
Glyma.01G051400 Glycine max HOM05D004594 ORTHO05D005225 0.0e+00 1455.3 1472 69.3
Phvul.003G045700 Phaseolus vulgaris HOM05D004594 ORTHO05D005225 0.0e+00 1401.3 1464 63.7
VMungo1215G3128 Vigna mungo HOM05D004594 ORTHO05D005225 0.0e+00 1382.1 1467 63.9
Lalb_Chr10g0098431 Lupinus albus HOM05D004594 ORTHO05D005225 0.0e+00 1370.1 1503 65.1
Psat2g116320 Pisum sativum HOM05D004594 ORTHO05D005225 0.0e+00 1359.7 1473 64.2
arahy.Tifrunner.gnm1.ann1.8R27D6 Arachis hypogaea HOM05D004594 ORTHO05D005225 0.0e+00 1312.4 1511 61.5
Medtr5g042000 Medicago truncatula HOM05D004594 ORTHO05D005225 0.0e+00 1224.9 1542 60.5
TPR.G34709 Trifolium pratense HOM05D004594 ORTHO05D005225 0.0e+00 1222.2 1267 66.8
arahy.Tifrunner.gnm1.ann1.KB2NSX Arachis hypogaea HOM05D004594 ORTHO05D005225 0.0e+00 1198.0 1671 54.2
QL03p068116 Quercus lobata HOM05D004594 ORTHO05D005225 2.9e-306 1055.8 1516 54.1
Dinv02961 Davidia involucrata HOM05D004594 ORTHO05D005225 1.4e-300 1036.9 1507 50.1
Cfa008959 Carpinus fangiana HOM05D004594 ORTHO05D005225 3.1e-287 992.6 1501 50.6
Ciclev10030522m.g Citrus clementina HOM05D004594 ORTHO05D005225 1.7e-285 986.9 1296 52.2
CiPaw.06G087400 Carya illinoinensis HOM05D004594 ORTHO05D005225 1.0e-282 977.6 1494 48.1
Haze_11988 Corylus avellana HOM05D004594 ORTHO05D005225 4.3e-281 972.2 1576 49.1
Duzib248G1210 Durio zibethinus HOM05D004594 ORTHO05D005225 1.4e-279 967.2 1498 47.0
CANSAT64G0453 Cannabis sativa HOM05D004594 ORTHO05D005225 2.6e-278 963.0 1507 49.9
MD16G1069300 Malus domestica HOM05D004594 ORTHO05D005225 5.4e-276 955.3 1467 49.3
Manes.05G104800 Manihot esculenta HOM05D004594 ORTHO05D005225 5.4e-276 955.3 1495 46.3
Thecc.02G342500 Theobroma cacao HOM05D004594 ORTHO05D005225 1.1e-273 947.6 1502 49.6
CiPaw.05G132100 Carya illinoinensis HOM05D004594 ORTHO05D005225 4.7e-272 942.2 1293 52.4
CsaV3_5G025180 Cucumis sativus L. HOM05D004594 ORTHO05D005225 1.4e-271 940.6 1503 48.5
Manes.01G034200 Manihot esculenta HOM05D004594 ORTHO05D005225 4.0e-271 939.1 1427 48.1
Gorai.012G186600 Gossypium raimondii HOM05D004594 ORTHO05D005225 4.4e-270 935.6 1504 51.7
Gohir.D04G191200 Gossypium hirsutum HOM05D004594 ORTHO05D005225 5.8e-270 935.3 1509 52.4
FAN17G1193 Fragaria x ananassa HOM05D004594 ORTHO05D005225 3.8e-269 932.6 1497 47.9
MELO3C002967.2 Cucumis melo HOM05D004594 ORTHO05D005225 6.4e-269 931.8 1504 50.5
FvH4_4g31060 Fragaria vesca HOM05D004594 ORTHO05D005225 4.1e-268 929.1 1491 48.0
FAN22G0563 Fragaria x ananassa HOM05D004594 ORTHO05D005225 2.7e-267 926.4 1465 49.2
Actinidia11790 Actinidia chinensis HOM05D004594 ORTHO05D005225 2.3e-266 923.3 1541 48.8
RcHm_v2.0_Chr4g0439441 Rosa chinensis HOM05D004594 ORTHO05D005225 1.1e-265 921.0 1488 47.0
FAN07G2218 Fragaria x ananassa HOM05D004594 ORTHO05D005225 3.3e-265 919.5 1465 49.1
Potri.010G166100 Populus trichocarpa HOM05D004594 ORTHO05D005225 6.2e-264 915.2 1504 47.6
ClCG09G021930 Citrullus lanatus HOM05D004594 ORTHO05D005225 1.3e-261 907.5 1537 47.3
GSVIVG01019950001 Vitis vinifera HOM05D004594 ORTHO05D005225 3.8e-261 906.0 1453 47.3
Prupe.1G277900 Prunus persica HOM05D004594 ORTHO05D005225 2.4e-260 903.3 1498 49.9
TWI79G0308 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 1.6e-259 900.6 1504 46.3
TWI75G1472 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 1.7e-258 897.1 1536 47.1
FAN12G0764 Fragaria x ananassa HOM05D004594 ORTHO05D005225 3.0e-258 896.3 1505 47.2
Eucgr.G02485 Eucalyptus grandis HOM05D004594 ORTHO05D005225 2.8e-256 889.8 1510 46.7
Sed0022637 Sechium edule HOM05D004594 ORTHO05D005225 2.9e-253 879.8 1489 48.8
Hund25219 Selenicereus undatus HOM05D004594 ORTHO05D005225 3.5e-251 872.8 1477 50.2
EL10Ac3g06731 Beta vulgaris HOM05D004594 ORTHO05D005225 1.9e-244 850.5 1520 43.4
AUR62035898 Chenopodium quinoa HOM05D004594 ORTHO05D005225 6.0e-243 845.5 1443 45.0
DCAR_013185 Daucus carota HOM05D004594 ORTHO05D005225 1.0e-242 844.7 1455 46.3
Sabra10G0126400 Salix brachista HOM05D004594 ORTHO05D005225 3.0e-242 843.2 1527 44.6
CAN.G194.5 Capsicum annuum HOM05D004594 ORTHO05D005225 1.9e-241 840.5 1453 45.4
Nn1g04524 Nelumbo nucifera HOM05D004594 ORTHO05D005225 2.5e-241 840.1 1467 46.4
PGR119G1944 Punica granatum HOM05D004594 ORTHO05D005225 8.4e-237 825.1 1491 48.9
Sopen04g003850 Solanum pennellii HOM05D004594 ORTHO05D005225 2.5e-236 823.5 1458 44.0
Peaxi162Scf00329g00617 Petunia axillaris HOM05D004594 ORTHO05D005225 3.2e-236 823.2 1436 47.1
TAR371G0293 Trochodendron aralioides HOM05D004594 ORTHO05D005225 2.8e-232 810.1 1495 44.3
Cc00_g08470 Coffea canephora HOM05D004594 ORTHO05D005225 6.3e-232 808.9 1503 42.7
Rhsim09G0077000 Rhododendron simsii HOM05D004594 ORTHO05D005225 3.8e-229 799.7 1498 43.1
THA.LOC104824075 Tarenaya hassleriana HOM05D004594 ORTHO05D005225 2.7e-227 793.5 1462 48.2
Nitab4.5_0000129g0280 Nicotiana tabacum HOM05D004594 ORTHO05D005225 5.7e-225 785.8 1462 43.4
Solyc04g008680.4 Solanum lycopersicum HOM05D004594 ORTHO05D005225 9.7e-225 785.0 1406 44.5
Carub.0005s0198 Capsella rubella HOM05D004594 ORTHO05D005225 2.2e-224 783.9 1484 46.8
TAR629G1990 Trochodendron aralioides HOM05D004594 ORTHO05D005225 4.1e-223 779.6 1325 45.8
AUR62035342 Chenopodium quinoa HOM05D004594 ORTHO05D005225 3.4e-222 776.5 1430 44.3
CARHR145490 Cardamine hirsuta HOM05D004594 ORTHO05D005225 5.9e-222 775.8 1512 46.1
Migut.E00588 Erythranthe guttata HOM05D004594 ORTHO05D005225 2.1e-219 767.3 1455 45.8
PSO013G0146 Papaver somniferum HOM05D004594 ORTHO05D005225 6.7e-218 762.3 1453 45.6
Aqoxy3G03454 Aquilegia oxysepala HOM05D004594 ORTHO05D005225 5.7e-217 759.2 1434 49.7
Sc11g0002090 Simmondsia chinensis HOM05D004594 ORTHO05D005225 1.4e-215 754.6 1225 47.8
Ah.13g075020 Amaranthus hybridus HOM05D004594 ORTHO05D005225 4.5e-214 749.6 1430 45.4
ECA233G5935 Erigeron canadensis HOM05D004594 ORTHO05D005225 2.5e-212 743.8 1414 44.3
Atru.chr11.1750 Acer truncatum HOM05D004594 ORTHO05D005225 4.2e-212 743.0 740 62.2
PSO832G1080 Papaver somniferum HOM05D004594 ORTHO05D005225 6.7e-210 735.7 1481 40.8
Nitab4.5_0001419g0070 Nicotiana tabacum HOM05D004594 ORTHO05D005225 5.7e-209 732.6 1283 45.1
Sp2g14100 Schrenkiella parvula HOM05D004594 ORTHO05D005225 3.7e-208 729.9 1517 46.7
AL5G12800 Arabidopsis lyrata HOM05D004594 ORTHO05D005225 5.9e-206 722.6 1502 44.7
AT2G03150 Arabidopsis thaliana HOM05D004594 ORTHO05D005225 1.9e-204 717.6 1501 46.2
Oeu044046.4 Olea europaea HOM05D004594 ORTHO05D005225 2.1e-203 714.1 1302 44.2
SGA_v2.0_scaffold140G35452 Striga asiatica HOM05D004594 ORTHO05D005225 1.8e-202 711.1 1469 40.9
Lsat_1_v5_gn_3_33900 Lactuca sativa HOM05D004594 ORTHO05D005225 9.1e-199 698.7 1479 44.7
ECA246G2651 Erigeron canadensis HOM05D004594 ORTHO05D005225 3.5e-198 696.8 1497 42.6
C09p31000 Brassica napus HOM05D004594 ORTHO05D005225 2.2e-197 694.1 1468 46.0
BcaB07g30683 Brassica carinata HOM05D004594 ORTHO05D005225 5.5e-196 689.5 1490 43.8
BcaC04g21505 Brassica carinata HOM05D004594 ORTHO05D005225 5.5e-196 689.5 1469 46.2
HanXRQChr08g0224741 Helianthus annuus HOM05D004594 ORTHO05D005225 2.1e-195 687.6 1457 41.2
A09p24110 Brassica napus HOM05D004594 ORTHO05D005225 1.4e-194 684.9 1468 45.4
BraA09t38011Z Brassica rapa HOM05D004594 ORTHO05D005225 1.4e-194 684.9 1468 45.4
Aa31LG2G7300 Aethionema arabicum HOM05D004594 ORTHO05D005225 3.0e-194 683.7 1269 44.5
BolC9t55959H Brassica oleracea HOM05D004594 ORTHO05D005225 3.1e-191 673.7 1473 44.9
Cpa.g.sc25.130 Carica papaya HOM05D004594 ORTHO05D005225 2.5e-188 664.1 1484 43.6
Thhalv10005550m.g Eutrema salsugineum HOM05D004594 ORTHO05D005225 4.1e-183 646.7 1474 42.9
Lsat_1_v5_gn_8_32581 Lactuca sativa HOM05D004594 ORTHO05D005225 3.6e-179 633.6 1426 40.5
HanXRQChr17g0540651 Helianthus annuus HOM05D004594 ORTHO05D005225 2.0e-169 601.3 1214 43.5
ATR0564G229 Amborella trichopoda HOM05D004594 ORTHO05D005225 5.4e-167 593.2 1473 40.3
MBI06_g33529_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 2.8e-155 554.3 1136 40.6
CDE07G1889 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 8.1e-155 552.7 1395 37.3
SHI24774 Sapria himalayana HOM05D004594 ORTHO05D005225 1.0e-149 535.8 1259 35.7
HanXRQChr14g0429131 Helianthus annuus HOM05D004594 ORTHO05D005225 5.1e-149 533.5 1364 42.1
HPP92_001998 Vanilla planifolia HOM05D004594 ORTHO05D005225 1.3e-144 518.8 1235 38.6
Gohir.A04G146601 Gossypium hirsutum HOM05D004594 ORTHO05D005225 3.1e-138 497.7 590 57.5
HanXRQChr08g0225211 Helianthus annuus HOM05D004594 ORTHO05D005225 5.4e-135 486.9 1365 35.4
Zm00001eb384230 Zea mays HOM05D004594 ORTHO05D005225 5.4e-135 486.9 1486 35.5
unitig_52.g17301 Utricularia gibba HOM05D004594 ORTHO05D005225 5.5e-127 460.3 774 43.5
CDE04G0114 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 3.5e-126 457.6 1430 32.3
Gohir.1Z049516 Gossypium hirsutum HOM05D004594 ORTHO05D005225 2.6e-121 441.4 653 46.7
Zm00001eb277410 Zea mays HOM05D004594 ORTHO05D005225 6.5e-120 436.8 1446 38.5
C02p51140 Brassica napus HOM05D004594 ORTHO05D005225 3.3e-108 397.9 1328 32.1
SEGI_16638 Sequoiadendron giganteum HOM05D004594 ORTHO05D005225 5.3e-98 364.0 651 43.3
Mapoly0102s0024 Marchantia polymorpha HOM05D004594 ORTHO05D005225 7.2e-71 273.9 721 35.6
Pp3c12_12730 Physcomitrium patens HOM05D004594 ORTHO05D005225 7.2e-71 273.9 706 33.7
Pp3c4_10880 Physcomitrium patens HOM05D004594 ORTHO05D005225 5.0e-64 251.1 675 35.1
AagrBONN_evm.TU.Sc2ySwM_340.1878 Anthoceros agrestis HOM05D004594 ORTHO05D005225 2.0e-60 239.2 664 31.8
SMO172G0003 Selaginella moellendorffii HOM05D004594 ORTHO05D005225 2.4e-58 232.3 473 42.7
CBR_g5747 Chara braunii HOM05D004594 ORTHO05D005225 1.2e-54 219.9 688 34.0
Atru.chr11.1748 Acer truncatum HOM05D004594 ORTHO05D005225 2.1e-54 219.2 426 49.3
vmacro10769 Vaccinium macrocarpon HOM05D004594 ORTHO05D005225 1.2e-52 213.4 842 34.1
Lj3E852T1 Lonicera japonica HOM05D004594 ORTHO05D005225 1.2e-44 186.8 259 47.5
unitig_52.g17300 Utricularia gibba HOM05D004594 ORTHO05D005225 1.5e-36 159.8 450 42.2
Rhsim04G0150600 Rhododendron simsii HOM05D004594 ORTHO05D005225 1.1e-34 153.7 171 46.8
Oeu034639.1 Olea europaea HOM05D004594 ORTHO05D005225 1.4e-34 153.3 237 46.0
Oeu032954.1 Olea europaea HOM05D004594 ORTHO05D005225 3.2e-34 152.1 92 75.0
Lj3E852G2 Lonicera japonica HOM05D004594 ORTHO05D005225 9.6e-31 140.6 244 45.1
Os06g0562700 Oryza sativa ssp. japonica HOM05D004594 ORTHO05D005225 1.1e-29 137.1 292 39.0
Lj3A852T53 Lonicera japonica HOM05D004594 ORTHO05D005225 2.0e-28 132.9 73 86.3
Gohir.1Z049616 Gossypium hirsutum HOM05D004594 ORTHO05D005225 9.3e-26 124.0 281 66.5
TPR.G11445 Trifolium pratense HOM05D004594 ORTHO05D005225 6.6e-24 117.9 64 87.5
Lsat_1_v5_gn_3_92661 Lactuca sativa HOM05D004594 ORTHO05D005225 1.8e-21 109.8 105 53.3
BcaC03g17185 Brassica carinata HOM05D004594 ORTHO05D005225 6.4e-19 101.3 497 29.2
Lsat_1_v5_gn_4_108040 Lactuca sativa HOM05D004594 ORTHO05D005225 5.4e-18 98.2 73 64.4
MBI02_g24139_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 5.4e-18 98.2 69 66.7
Lsat_1_v5_gn_1_53021 Lactuca sativa HOM05D004594 ORTHO05D005225 4.8e-14 85.1 63 65.1
QL03p068420 Quercus lobata HOM05D004594 ORTHO05D005225 1.8e-13 83.2 265 35.8
Actinidia04099 Actinidia chinensis HOM05D004594 ORTHO05D005225 2.4e-13 82.8 244 38.1
A02p33250 Brassica napus HOM05D004594 ORTHO05D005225 5.3e-13 81.6 79 50.6
BolC2t11204H Brassica oleracea HOM05D004594 ORTHO05D005225 3.4e-12 79.0 76 48.7
MBI05_g14664_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 4.5e-12 78.6 50 70.0
SHI24778 Sapria himalayana HOM05D004594 ORTHO05D005225 7.6e-12 77.8 72 61.1
A02p33260 Brassica napus HOM05D004594 ORTHO05D005225 2.2e-11 76.3 50 66.0
Cre06.g283634 Chlamydomonas reinhardtii HOM05D004594 ORTHO05D005225 6.5e-11 74.7 292 23.3
CBR_g5749 Chara braunii HOM05D004594 ORTHO05D005225 8.4e-11 74.3 314 30.6
QL03p068414 Quercus lobata HOM05D004594 ORTHO05D005225 3.2e-10 72.4 55 58.2
HPP92_001999 Vanilla planifolia HOM05D004594 ORTHO05D005225 4.6e-09 68.6 42 66.7
RcHm_v2.0_Chr3g0458311 Rosa chinensis HOM05D004594 ORTHO05D005225 1.3e-08 67.0 89 42.7
MBI07_g23220_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 2.3e-08 66.2 103 36.9
BraA02t08348Z Brassica rapa HOM05D004594 ORTHO05D005225 1.9e-07 63.2 41 63.4


User provided reference genes

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