Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0014656 Lotus japonicus HOM05D006175 ORTHO05D008081 1.2e-305 1052.4 536 100.0
arahy.Tifrunner.gnm1.ann1.R57YID Arachis hypogaea HOM05D006175 ORTHO05D008081 3.1e-261 904.8 542 83.2
arahy.Tifrunner.gnm1.ann1.SV5NHS Arachis hypogaea HOM05D006175 ORTHO05D008081 8.5e-259 896.7 551 81.9
VMungo0464G1920 Vigna mungo HOM05D006175 ORTHO05D008081 1.4e-256 889.4 541 82.3
Cfa020669 Carpinus fangiana HOM05D006175 ORTHO05D008081 1.5e-255 885.9 531 80.4
Phvul.004G144700 Phaseolus vulgaris HOM05D006175 ORTHO05D008081 1.7e-254 882.5 538 81.6
CiPaw.15G150200 Carya illinoinensis HOM05D006175 ORTHO05D008081 1.8e-253 879.0 539 79.8
Glyma.16G218700 Glycine max HOM05D006175 ORTHO05D008081 5.3e-253 877.5 535 80.6
Ciclev10019690m.g Citrus clementina HOM05D006175 ORTHO05D008081 1.2e-249 866.3 537 78.8
QL10p033089 Quercus lobata HOM05D006175 ORTHO05D008081 3.6e-249 864.8 564 79.3
Eucgr.H00594 Eucalyptus grandis HOM05D006175 ORTHO05D008081 6.7e-248 860.5 535 77.2
GSVIVG01008158001 Vitis vinifera HOM05D006175 ORTHO05D008081 1.8e-245 852.4 536 77.1
Duzib168G0906 Durio zibethinus HOM05D006175 ORTHO05D008081 3.1e-245 851.7 561 73.4
Gohir.D05G004300 Gossypium hirsutum HOM05D006175 ORTHO05D008081 4.1e-245 851.3 536 76.3
Potri.012G039300 Populus trichocarpa HOM05D006175 ORTHO05D008081 5.3e-245 850.9 541 75.8
CANSAT01G2997 Cannabis sativa HOM05D006175 ORTHO05D008081 2.6e-244 848.6 536 76.5
Thecc.03G068300 Theobroma cacao HOM05D006175 ORTHO05D008081 2.6e-244 848.6 529 76.9
Gohir.A05G003900 Gossypium hirsutum HOM05D006175 ORTHO05D008081 4.5e-244 847.8 536 75.7
TWI60G0630 Tripterygium wilfordii HOM05D006175 ORTHO05D008081 5.9e-244 847.4 536 76.1
Atru.chr3.1303 Acer truncatum HOM05D006175 ORTHO05D008081 3.8e-243 844.7 536 76.3
MELO3C001937.2 Cucumis melo HOM05D006175 ORTHO05D008081 8.5e-243 843.6 538 76.0
Gorai.009G004100 Gossypium raimondii HOM05D006175 ORTHO05D008081 4.4e-239 831.2 541 74.9
Sed0010232 Sechium edule HOM05D006175 ORTHO05D008081 1.1e-237 826.6 531 75.9
PGR083G2599 Punica granatum HOM05D006175 ORTHO05D008081 1.4e-237 826.2 531 74.6
ClCG04G012690 Citrullus lanatus HOM05D006175 ORTHO05D008081 4.5e-236 821.2 543 74.2
Cc04_g09090 Coffea canephora HOM05D006175 ORTHO05D008081 4.5e-236 821.2 536 75.0
CsaV3_1G032270 Cucumis sativus L. HOM05D006175 ORTHO05D008081 2.9e-235 818.5 532 74.6
Medtr6g075170 Medicago truncatula HOM05D006175 ORTHO05D008081 1.9e-234 815.8 538 76.0
FvH4_5g17980 Fragaria vesca HOM05D006175 ORTHO05D008081 9.4e-234 813.5 534 74.2
PGSC0003DMG400031043 Solanum tuberosum HOM05D006175 ORTHO05D008081 6.8e-232 807.4 536 72.0
Oeu019145.1 Olea europaea HOM05D006175 ORTHO05D008081 1.5e-231 806.2 545 71.9
RcHm_v2.0_Chr7g0177621 Rosa chinensis HOM05D006175 ORTHO05D008081 2.0e-231 805.8 550 73.1
Solyc03g098250.4 Solanum lycopersicum HOM05D006175 ORTHO05D008081 4.4e-231 804.7 536 71.8
TPR.G28014 Trifolium pratense HOM05D006175 ORTHO05D008081 9.8e-231 803.5 558 72.9
DCAR_023267 Daucus carota HOM05D006175 ORTHO05D008081 6.3e-230 800.8 577 68.8
Sabra12G0027800 Salix brachista HOM05D006175 ORTHO05D008081 2.2e-227 792.3 543 72.4
Sopen03g028960 Solanum pennellii HOM05D006175 ORTHO05D008081 8.5e-227 790.4 536 71.1
Migut.O00238 Erythranthe guttata HOM05D006175 ORTHO05D008081 1.9e-226 789.3 540 71.1
CAN.G637.8 Capsicum annuum HOM05D006175 ORTHO05D008081 8.8e-224 780.4 537 70.8
Prupe.8G055400 Prunus persica HOM05D006175 ORTHO05D008081 8.8e-224 780.4 538 72.1
Dinv02367 Davidia involucrata HOM05D006175 ORTHO05D008081 4.4e-223 778.1 538 71.7
TAR622G0246 Trochodendron aralioides HOM05D006175 ORTHO05D008081 7.5e-223 777.3 490 77.1
THA.LOC104810934 Tarenaya hassleriana HOM05D006175 ORTHO05D008081 1.8e-221 772.7 536 70.0
SalBow5G1258 Salvia bowleyana HOM05D006175 ORTHO05D008081 1.3e-219 766.5 548 68.2
SpUn0288_0010 Schrenkiella parvula HOM05D006175 ORTHO05D008081 1.7e-219 766.1 533 70.4
Manes.03G098800 Manihot esculenta HOM05D006175 ORTHO05D008081 2.9e-219 765.4 497 74.8
Thhalv10001961m.g Eutrema salsugineum HOM05D006175 ORTHO05D008081 1.1e-218 763.5 533 69.6
Zm00001eb037700 Zea mays HOM05D006175 ORTHO05D008081 1.1e-218 763.5 534 68.7
SHI32102 Sapria himalayana HOM05D006175 ORTHO05D008081 3.3e-218 761.9 569 67.8
Aqoxy2G03817 Aquilegia oxysepala HOM05D006175 ORTHO05D008081 1.2e-217 760.0 538 68.8
Peaxi162Scf00171g00431 Petunia axillaris HOM05D006175 ORTHO05D008081 1.2e-217 760.0 541 69.1
PSO782G5703 Papaver somniferum HOM05D006175 ORTHO05D008081 3.0e-216 755.4 533 68.5
PSO063G7422 Papaver somniferum HOM05D006175 ORTHO05D008081 6.8e-216 754.2 533 68.3
Carub.0006s1975 Capsella rubella HOM05D006175 ORTHO05D008081 1.5e-215 753.1 535 69.9
Aa31LG1G13320 Aethionema arabicum HOM05D006175 ORTHO05D008081 1.3e-214 750.0 531 68.4
AL6G33090 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 2.2e-214 749.2 531 69.7
CSS0011699 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D008081 2.9e-214 748.8 551 69.0
AT5G22110 Arabidopsis thaliana HOM05D006175 ORTHO05D008081 3.7e-214 748.4 531 69.3
C03p31990 Brassica napus HOM05D006175 ORTHO05D008081 1.4e-213 746.5 533 68.7
A03p26700 Brassica napus HOM05D006175 ORTHO05D008081 1.8e-213 746.1 531 68.7
BcaC01g04929 Brassica carinata HOM05D006175 ORTHO05D008081 2.4e-213 745.7 533 68.7
BolC3t15542H Brassica oleracea HOM05D006175 ORTHO05D008081 4.1e-213 745.0 533 68.7
Lsat_1_v5_gn_2_15241 Lactuca sativa HOM05D006175 ORTHO05D008081 4.6e-212 741.5 536 68.5
SGA_v2.0_scaffold90G27775 Striga asiatica HOM05D006175 ORTHO05D008081 4.6e-212 741.5 534 67.2
Cpa.g.sc103.12 Carica papaya HOM05D006175 ORTHO05D008081 3.0e-211 738.8 529 67.9
BraA03t11882Z Brassica rapa HOM05D006175 ORTHO05D008081 9.5e-210 733.8 535 67.9
BcaB01g03058 Brassica carinata HOM05D006175 ORTHO05D008081 4.7e-209 731.5 533 67.7
Os05g0160800 Oryza sativa ssp. japonica HOM05D006175 ORTHO05D008081 1.0e-208 730.3 509 69.4
ECA238G0751 Erigeron canadensis HOM05D006175 ORTHO05D008081 1.5e-207 726.5 533 67.7
MD06G1235400 Malus domestica HOM05D006175 ORTHO05D008081 1.5e-207 726.5 537 67.6
Sc10g0008900 Simmondsia chinensis HOM05D006175 ORTHO05D008081 3.7e-206 721.8 535 66.5
SEGI_25528 Sequoiadendron giganteum HOM05D006175 ORTHO05D008081 4.9e-206 721.5 536 63.2
EL10Ac3g05085 Beta vulgaris HOM05D006175 ORTHO05D008081 2.7e-204 715.7 536 64.7
Nitab4.5_0005973g0040 Nicotiana tabacum HOM05D006175 ORTHO05D008081 1.5e-199 699.9 556 63.8
Lj5A165T85 Lonicera japonica HOM05D006175 ORTHO05D008081 1.4e-197 693.3 486 71.2
vmacro03513 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 2.1e-196 689.5 609 59.8
Haze_18963 Corylus avellana HOM05D006175 ORTHO05D008081 1.2e-191 673.7 533 64.9
COL.COLO4_27108 Corchorus olitorius HOM05D006175 ORTHO05D008081 2.6e-191 672.5 515 65.6
Ah.04g156800 Amaranthus hybridus HOM05D006175 ORTHO05D008081 9.3e-181 637.5 536 58.8
Hund09784 Selenicereus undatus HOM05D006175 ORTHO05D008081 3.6e-177 625.5 536 59.9
Nitab4.5_0001180g0190 Nicotiana tabacum HOM05D006175 ORTHO05D008081 5.3e-176 621.7 545 59.1
Pp3c16_3220 Physcomitrium patens HOM05D006175 ORTHO05D008081 1.8e-171 606.7 531 54.6
AUR62002056 Chenopodium quinoa HOM05D006175 ORTHO05D008081 3.3e-170 602.4 598 53.5
vmacro01251 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 2.1e-169 599.7 638 53.0
ATR0598G269 Amborella trichopoda HOM05D006175 ORTHO05D008081 1.5e-167 593.6 542 56.5
Prupe.5G240100 Prunus persica HOM05D006175 ORTHO05D008081 2.0e-167 593.2 560 58.4
SMO089G0008 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 6.0e-164 581.6 534 53.7
Mapoly0003s0120 Marchantia polymorpha HOM05D006175 ORTHO05D008081 1.1e-162 577.4 530 53.0
Lalb_Chr22g0353691 Lupinus albus HOM05D006175 ORTHO05D008081 9.6e-162 574.3 305 88.5
AUR62028170 Chenopodium quinoa HOM05D006175 ORTHO05D008081 3.7e-161 572.4 536 54.5
HPP92_019162 Vanilla planifolia HOM05D006175 ORTHO05D008081 4.5e-159 565.5 530 56.0
SMO200G0091 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 9.7e-146 521.2 540 49.6
Psat6g072600 Pisum sativum HOM05D006175 ORTHO05D008081 2.9e-142 509.6 563 53.6
HanXRQChr05g0129731 Helianthus annuus HOM05D006175 ORTHO05D008081 1.5e-138 497.3 320 73.4
AagrBONN_evm.TU.Sc2ySwM_369.495 Anthoceros agrestis HOM05D006175 ORTHO05D008081 6.5e-134 481.9 529 46.1
Rhsim06G0000100 Rhododendron simsii HOM05D006175 ORTHO05D008081 9.4e-133 478.0 304 72.4
HanXRQChr11g0338981 Helianthus annuus HOM05D006175 ORTHO05D008081 1.6e-127 460.7 305 72.5
MD14G1242400 Malus domestica HOM05D006175 ORTHO05D008081 3.8e-126 456.1 449 55.0
FAN18G1603 Fragaria x ananassa HOM05D006175 ORTHO05D008081 5.7e-114 415.6 248 79.8
Glyma.09G169100 Glycine max HOM05D006175 ORTHO05D008081 6.3e-113 412.1 307 68.7
unitig_0.g1094 Utricularia gibba HOM05D006175 ORTHO05D008081 1.8e-112 410.6 567 42.9
MCO14G014 Micromonas commoda HOM05D006175 ORTHO05D008081 5.0e-94 349.4 629 32.6
AL4G26880 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 1.7e-86 324.3 376 48.9
Lalb_Chr22g0353701 Lupinus albus HOM05D006175 ORTHO05D008081 9.2e-80 302.0 213 72.3
Cre10.g424200 Chlamydomonas reinhardtii HOM05D006175 ORTHO05D008081 4.3e-77 293.1 491 36.0
PRCOL_00003367 Prasinoderma coloniale HOM05D006175 ORTHO05D008081 4.7e-68 263.1 580 31.9
VMungo1215G0683 Vigna mungo HOM05D006175 ORTHO05D008081 1.4e-64 251.5 201 61.7
FAN04G2119 Fragaria x ananassa HOM05D006175 ORTHO05D008081 1.6e-63 248.1 212 62.3
FAN08G2730 Fragaria x ananassa HOM05D006175 ORTHO05D008081 1.7e-62 244.6 212 61.3
FAN13G0892 Fragaria x ananassa HOM05D006175 ORTHO05D008081 3.0e-62 243.8 212 61.3
HanXRQChr05g0129721 Helianthus annuus HOM05D006175 ORTHO05D008081 4.3e-61 240.0 213 60.6
HanXRQChr11g0338971 Helianthus annuus HOM05D006175 ORTHO05D008081 3.1e-59 233.8 213 59.6
AUR62043421 Chenopodium quinoa HOM05D006175 ORTHO05D008081 1.9e-56 224.6 174 61.5
CDE04G1443 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 1.9e-48 198.0 104 83.7
Ca_23674_v3 Cicer arietinum L. HOM05D006175 ORTHO05D008081 6.7e-38 162.9 185 51.4
CDE04G2185 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 9.3e-32 142.5 89 73.0
Thecc.10G092900 Theobroma cacao HOM05D006175 ORTHO05D008952 9.3e-32 142.5 132 59.1
CDE04G3312 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 6.7e-22 109.8 182 34.6
Cfa025039 Carpinus fangiana HOM05D006175 ORTHO05D008081 2.6e-21 107.8 430 25.8
TPR.G28017 Trifolium pratense HOM05D006175 ORTHO05D008081 3.8e-17 94.0 109 49.5
Thecc.04G242900 Theobroma cacao HOM05D006175 ORTHO05D008081 1.4e-14 85.5 48 81.2
CSS0024377 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D043346 1.8e-14 85.1 48 85.4
Gohir.D04G101160 Gossypium hirsutum HOM05D006175 ORTHO05D047312 3.1e-11 74.3 53 69.8
CDE04G3394 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 7.0e-11 73.2 113 43.4
Gorai.009G404500 Gossypium raimondii HOM05D006175 ORTHO05D047312 7.0e-11 73.2 54 68.5
BcaC05g28616 Brassica carinata HOM05D002760 ORTHO05D001361 3.2e-08 64.3 31 83.9
A07p06810 Brassica napus HOM05D002760 ORTHO05D003169 3.2e-08 64.3 31 83.9
BNapus_Darmor_BZH_scaffold_38p01460 Brassica napus HOM05D002760 ORTHO05D003169 3.2e-08 64.3 31 83.9
BraA03t12607Z Brassica rapa HOM05D002760 ORTHO05D003169 3.2e-08 64.3 31 83.9
C05p47240 Brassica napus HOM05D002760 ORTHO05D003169 9.4e-08 62.8 31 80.6
Nn2g11046 Nelumbo nucifera HOM05D006175 ORTHO05D008081 4.0e-06 57.4 52 55.8


User provided reference genes

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