Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0014489 Lotus japonicus HOM05D005833 ORTHO05D008135 0.0e+00 1668.7 841 100.0
Ca_25244_v3 Cicer arietinum L. HOM05D005833 ORTHO05D008135 0.0e+00 1105.1 811 69.3
Medtr6g069480 Medicago truncatula HOM05D005833 ORTHO05D008135 0.0e+00 1104.0 843 67.5
Psat6g000360 Pisum sativum HOM05D005833 ORTHO05D008135 0.0e+00 1082.8 841 66.6
Lalb_Chr19g0131751 Lupinus albus HOM05D005833 ORTHO05D008135 1.6e-299 1032.7 852 63.6
VMungo0647G1167 Vigna mungo HOM05D005833 ORTHO05D008135 4.2e-297 1024.6 832 64.7
TPR.G6767 Trifolium pratense HOM05D005833 ORTHO05D008135 2.7e-283 978.8 736 68.6
Glyma.14G223300 Glycine max HOM05D005833 ORTHO05D008135 1.5e-278 963.0 837 61.6
Phvul.001G001200 Phaseolus vulgaris HOM05D005833 ORTHO05D008135 7.5e-270 934.1 834 60.3
arahy.Tifrunner.gnm1.ann1.JP3Y8V Arachis hypogaea HOM05D005833 ORTHO05D008135 1.9e-257 892.9 837 57.1
arahy.Tifrunner.gnm1.ann1.5KXZ1H Arachis hypogaea HOM05D005833 ORTHO05D008135 5.6e-257 891.3 822 57.7
QL02p014018 Quercus lobata HOM05D005833 ORTHO05D008135 3.2e-252 875.5 847 55.4
MD08G1002500 Malus domestica HOM05D005833 ORTHO05D008135 5.8e-246 854.7 857 54.0
Haze_22762 Corylus avellana HOM05D005833 ORTHO05D008135 3.8e-245 852.0 789 57.2
Prupe.2G013700 Prunus persica HOM05D005833 ORTHO05D008135 2.7e-243 845.9 788 56.3
Thecc.08G058300 Theobroma cacao HOM05D005833 ORTHO05D008135 7.3e-233 811.2 790 53.4
GSVIVG01008674001 Vitis vinifera HOM05D005833 ORTHO05D008135 2.9e-229 799.3 839 51.1
Cpa.g.sc26.202 Carica papaya HOM05D005833 ORTHO05D008135 5.4e-228 795.0 787 53.1
Actinidia17037 Actinidia chinensis HOM05D005833 ORTHO05D008135 3.5e-227 792.3 786 53.6
Gohir.A01G106200 Gossypium hirsutum HOM05D005833 ORTHO05D008135 4.6e-227 792.0 790 53.0
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 1.8e-226 790.0 786 54.1
Dinv31936 Davidia involucrata HOM05D005833 ORTHO05D008135 1.1e-225 787.3 790 53.5
CiPaw.12G008600 Carya illinoinensis HOM05D005833 ORTHO05D008135 6.2e-224 781.6 796 52.6
Nn5g30935 Nelumbo nucifera HOM05D005833 ORTHO05D008135 1.2e-222 777.3 795 52.8
TWI38G0766 Tripterygium wilfordii HOM05D005833 ORTHO05D008135 1.0e-218 764.2 787 51.5
TAR381G0753 Trochodendron aralioides HOM05D005833 ORTHO05D008135 1.3e-218 763.8 816 51.2
Rhsim06G0007700 Rhododendron simsii HOM05D005833 ORTHO05D008135 8.2e-216 754.6 787 52.0
Potri.001G047200 Populus trichocarpa HOM05D005833 ORTHO05D008135 3.4e-214 749.2 828 49.4
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 5.8e-214 748.4 783 50.6
RcHm_v2.0_Chr6g0270441 Rosa chinensis HOM05D005833 ORTHO05D008135 1.7e-213 746.9 843 48.6
CAN.G311.113 Capsicum annuum HOM05D005833 ORTHO05D008135 1.1e-212 744.2 782 51.5
Ciclev10004328m.g Citrus clementina HOM05D005833 ORTHO05D008135 7.4e-209 731.5 789 50.1
CANSAT56G4366 Cannabis sativa HOM05D005833 ORTHO05D008135 1.6e-208 730.3 804 50.9
Gorai.002G118000 Gossypium raimondii HOM05D005833 ORTHO05D008135 4.8e-208 728.8 790 50.0
AL2G36360 Arabidopsis lyrata HOM05D005833 ORTHO05D008135 8.2e-208 728.0 785 50.7
Sp5g31420 Schrenkiella parvula HOM05D005833 ORTHO05D008135 2.4e-207 726.5 779 50.7
Carub.0002s2317 Capsella rubella HOM05D005833 ORTHO05D008135 1.5e-206 723.8 791 49.9
CSS0049151 Camellia sinensis var. sinensis HOM05D005833 ORTHO05D008135 5.9e-206 721.8 792 50.9
MBI15_g24990_MAGBIO Magnolia biondii HOM05D005833 ORTHO05D008135 1.3e-205 720.7 921 45.3
PGSC0003DMG400009977 Solanum tuberosum HOM05D005833 ORTHO05D008135 2.9e-205 719.5 783 49.2
Sopen04g035940 Solanum pennellii HOM05D005833 ORTHO05D008135 6.5e-205 718.4 781 49.2
Nitab4.5_0000588g0140 Nicotiana tabacum HOM05D005833 ORTHO05D008135 1.1e-204 717.6 779 49.9
vmacro21814 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 3.2e-204 716.1 789 49.6
Solyc04g082320.3 Solanum lycopersicum HOM05D005833 ORTHO05D008135 4.2e-204 715.7 783 48.8
RcHm_v2.0_Chr6g0304231 Rosa chinensis HOM05D005833 ORTHO05D008135 9.4e-204 714.5 844 47.5
CsaV3_7G024400 Cucumis sativus L. HOM05D005833 ORTHO05D008135 1.6e-203 713.8 838 46.3
Sabra01G0032600 Salix brachista HOM05D005833 ORTHO05D008135 2.1e-203 713.4 863 46.6
BraA07t31715Z Brassica rapa HOM05D005833 ORTHO05D008135 2.7e-203 713.0 787 49.6
C06p50250 Brassica napus HOM05D005833 ORTHO05D008135 4.6e-203 712.2 785 49.7
BolC6t40064H Brassica oleracea HOM05D005833 ORTHO05D008135 3.9e-202 709.1 785 49.3
A07p41850 Brassica napus HOM05D005833 ORTHO05D008135 6.7e-202 708.4 785 49.2
MELO3C023645.2 Cucumis melo HOM05D005833 ORTHO05D008135 6.7e-202 708.4 785 48.2
Thhalv10018138m.g Eutrema salsugineum HOM05D005833 ORTHO05D008135 8.8e-202 708.0 786 49.4
ClCG09G010280 Citrullus lanatus HOM05D005833 ORTHO05D008135 9.7e-201 704.5 813 45.9
THA.LOC104813754 Tarenaya hassleriana HOM05D005833 ORTHO05D008135 9.7e-201 704.5 793 49.3
Peaxi162Scf00893g00432 Petunia axillaris HOM05D005833 ORTHO05D008135 1.0e-197 694.5 781 48.9
Aa31LG4G6370 Aethionema arabicum HOM05D005833 ORTHO05D008135 2.9e-197 693.0 786 48.7
FvH4_2g37510 Fragaria vesca HOM05D005833 ORTHO05D008135 7.9e-195 684.9 816 46.1
ECA238G3879 Erigeron canadensis HOM05D005833 ORTHO05D008135 2.0e-193 680.2 767 48.5
HanXRQChr14g0428311 Helianthus annuus HOM05D005833 ORTHO05D008135 5.7e-193 678.7 781 47.4
Ah.11g041110 Amaranthus hybridus HOM05D005833 ORTHO05D008135 1.1e-191 674.5 780 47.6
FAN27G2717 Fragaria x ananassa HOM05D005833 ORTHO05D008135 5.3e-191 672.2 828 45.7
Lsat_1_v5_gn_2_5021 Lactuca sativa HOM05D005833 ORTHO05D008135 2.6e-190 669.8 787 47.8
FAN15G1206 Fragaria x ananassa HOM05D005833 ORTHO05D008135 2.7e-187 659.8 817 44.9
Manes.01G079700 Manihot esculenta HOM05D005833 ORTHO05D008135 3.6e-187 659.4 845 44.9
SHI22388 Sapria himalayana HOM05D005833 ORTHO05D008135 1.1e-185 654.4 827 44.7
Hma1.2p1_1100F.1_g257060 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 2.6e-185 653.3 784 46.3
Lj8C590T1 Lonicera japonica HOM05D005833 ORTHO05D008135 2.2e-184 650.2 745 47.8
AUR62043177 Chenopodium quinoa HOM05D005833 ORTHO05D008135 1.2e-182 644.4 825 44.2
ATR0691G240 Amborella trichopoda HOM05D005833 ORTHO05D008135 4.7e-179 632.5 843 43.5
Migut.N03019 Erythranthe guttata HOM05D005833 ORTHO05D008135 4.4e-177 625.9 796 44.2
EL10Ac1g01971 Beta vulgaris HOM05D005833 ORTHO05D008135 7.5e-177 625.2 776 44.8
Cc01_g04490 Coffea canephora HOM05D005833 ORTHO05D008135 3.7e-176 622.9 798 45.4
Hma1.2p1_1100F.1_g257040 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 1.0e-173 614.8 619 52.5
MSTRG.22056 Avicennia marina HOM05D005833 ORTHO05D008135 1.3e-173 614.4 796 44.0
CDE09G0025 Ceratophyllum demersum HOM05D005833 ORTHO05D008135 8.5e-173 611.7 845 42.6
PSO541G2949 Papaver somniferum HOM05D005833 ORTHO05D008135 1.5e-169 600.9 825 43.0
SGA_v2.0_scaffold225G43066 Striga asiatica HOM05D005833 ORTHO05D008135 8.6e-165 585.1 801 42.2
BcaC08g47270 Brassica carinata HOM05D005833 ORTHO05D008135 5.5e-164 582.4 656 48.8
CARHR069840 Cardamine hirsuta HOM05D005833 ORTHO05D008135 3.6e-163 579.7 636 49.2
TPR.G8628 Trifolium pratense HOM05D005833 ORTHO05D008135 8.9e-162 575.1 358 78.5
Aqoxy6G01299 Aquilegia oxysepala HOM05D005833 ORTHO05D008135 1.2e-161 574.7 826 43.2
HPP92_008490 Vanilla planifolia HOM05D005833 ORTHO05D008135 2.0e-161 573.9 834 39.7
BcaNung02801 Brassica carinata HOM05D005833 ORTHO05D008135 2.6e-161 573.5 767 43.8
Zm00001eb315840 Zea mays HOM05D005833 ORTHO05D008135 3.7e-160 569.7 798 40.5
Sed0015348 Sechium edule HOM05D005833 ORTHO05D008135 4.3e-156 556.2 620 46.9
AT1G76280 Arabidopsis thaliana HOM05D005833 ORTHO05D008135 5.6e-156 555.8 617 48.8
FAN20G1756 Fragaria x ananassa HOM05D005833 ORTHO05D008135 6.8e-154 548.9 659 46.6
Gohir.D01G092700 Gossypium hirsutum HOM05D005833 ORTHO05D008135 5.4e-151 539.3 554 52.2
PSO675G2737 Papaver somniferum HOM05D005833 ORTHO05D008135 6.6e-149 532.3 823 39.5
PGR083G0966 Punica granatum HOM05D005833 ORTHO05D008135 3.3e-148 530.0 785 39.4
Eucgr.F01756 Eucalyptus grandis HOM05D005833 ORTHO05D008135 1.4e-146 524.6 650 45.5
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 8.3e-144 515.4 619 45.4
SEGI_05799 Sequoiadendron giganteum HOM05D005833 ORTHO05D008135 1.1e-135 488.4 807 36.6
SalBow6G3625 Salvia bowleyana HOM05D005833 ORTHO05D008135 2.6e-121 440.7 556 44.6
unitig_699.g19597 Utricularia gibba HOM05D005833 ORTHO05D008135 8.1e-115 419.1 638 39.8
BcaC09g51226 Brassica carinata HOM05D005833 ORTHO05D008135 5.4e-111 406.4 679 38.9
AUR62036881 Chenopodium quinoa HOM05D005833 ORTHO05D008135 2.4e-106 391.0 553 41.0
BcaC08g47127 Brassica carinata HOM05D005833 ORTHO05D008135 2.3e-101 374.4 446 45.5
TPR.G8631 Trifolium pratense HOM05D005833 ORTHO05D008135 1.9e-92 344.7 349 55.6
Glyma.14G222150 Glycine max HOM05D005833 ORTHO05D008135 7.4e-84 316.2 283 58.7
BcaC08g47126 Brassica carinata HOM05D005833 ORTHO05D008135 2.7e-70 271.2 254 55.1
Medtr1g026480 Medicago truncatula HOM05D005833 ORTHO05D008135 3.6e-62 244.2 159 75.5
CAN.G643.17 Capsicum annuum HOM05D005833 ORTHO05D008135 5.2e-61 240.4 404 37.9
Lj5g0006874 Lotus japonicus HOM05D005833 ORTHO05D008135 1.7e-56 225.3 143 81.8
COL.COLO4_04005 Corchorus olitorius HOM05D005833 ORTHO05D008135 2.6e-52 211.5 385 38.2
Medtr1g026340 Medicago truncatula HOM05D005833 ORTHO05D008135 1.3e-48 199.1 661 26.2
Medtr1g026460 Medicago truncatula HOM05D005833 ORTHO05D008135 1.3e-48 199.1 661 26.2
Lj8P589T22 Lonicera japonica HOM05D005833 ORTHO05D008135 8.3e-43 179.9 170 54.7
Mapoly0009s0070 Marchantia polymorpha HOM05D005833 ORTHO05D008135 1.7e-40 172.2 597 25.6
SMO230G0024 Selaginella moellendorffii HOM05D005833 ORTHO05D008135 1.4e-37 162.5 769 21.6
CBR_g11913 Chara braunii HOM05D005833 ORTHO05D008135 2.3e-37 161.8 632 24.4
Nitab4.5_0000198g0010 Nicotiana tabacum HOM05D005833 ORTHO05D008135 8.9e-37 159.8 163 52.1
Pp3c11_2930 Physcomitrium patens HOM05D005833 ORTHO05D008135 8.3e-35 153.3 749 23.2
Oeu011332.1 Olea europaea HOM05D005833 ORTHO05D008135 1.0e-32 146.4 147 53.1
Oeu011333.1 Olea europaea HOM05D005833 ORTHO05D008135 1.0e-32 146.4 147 53.1
AagrBONN_evm.TU.Sc2ySwM_117.1478 Anthoceros agrestis HOM05D005833 ORTHO05D008135 1.7e-32 145.6 483 25.3
TPR.G8633 Trifolium pratense HOM05D005833 ORTHO05D008135 1.5e-28 132.5 103 64.1
DCAR_009530 Daucus carota HOM05D005833 ORTHO05D008135 1.6e-22 112.5 113 49.6
BcaC08g47271 Brassica carinata HOM05D005833 ORTHO05D008135 6.2e-22 110.5 118 49.2
vmacro21815 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 1.3e-11 76.3 76 48.7
TAR371G0591 Trochodendron aralioides HOM05D006569 ORTHO05D007515 4.2e-10 71.2 186 23.7
AagrBONN_evm.TU.Sc2ySwM_368.2006__2007 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.1e-10 70.5 704 19.2
BcaB05g24986 Brassica carinata HOM05D005833 ORTHO05D008135 9.3e-10 70.1 77 51.9
SMO275G0048 Selaginella moellendorffii HOM05D000001 ORTHO05D000003 2.1e-09 68.9 359 23.1
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 4.6e-09 67.8 228 21.9
BcaC02g09400 Brassica carinata HOM05D000001 ORTHO05D000003 1.7e-08 65.9 391 22.8
C04p42260 Brassica napus HOM05D000001 ORTHO05D000003 1.7e-08 65.9 391 22.8
BcaC09g51225 Brassica carinata HOM05D005833 ORTHO05D008135 5.1e-08 64.3 79 43.0
A04p08520 Brassica napus HOM05D000001 ORTHO05D000003 5.1e-08 64.3 391 22.8
BolC4t25805H Brassica oleracea HOM05D000001 ORTHO05D000003 1.1e-07 63.2 391 22.5
Ciclev10010788m.g Citrus clementina HOM05D000001 ORTHO05D000003 1.1e-07 63.2 391 22.8
AL7G42900 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 2.5e-07 62.0 358 22.6
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 2.5e-07 62.0 236 21.2
Lsat_1_v5_gn_3_133181 Lactuca sativa HOM05D003297 ORTHO05D004027 2.5e-07 62.0 87 35.6
Lsat_1_v5_gn_4_134881 Lactuca sativa HOM05D005833 ORTHO05D011576 2.5e-07 62.0 63 49.2
Lsat_1_v5_gn_8_149561 Lactuca sativa HOM05D005833 ORTHO05D011576 2.5e-07 62.0 63 49.2
Cpa.g.sc177.5 Carica papaya HOM05D000001 ORTHO05D010175 3.3e-07 61.6 160 28.8
AT4G13650 Arabidopsis thaliana HOM05D000001 ORTHO05D000003 5.6e-07 60.8 370 22.7
Lsat_1_v5_gn_1_129260 Lactuca sativa HOM05D005833 ORTHO05D011576 5.6e-07 60.8 52 51.9
Lsat_1_v5_gn_5_130920 Lactuca sativa HOM05D001159 ORTHO05D011576 5.6e-07 60.8 63 47.6
Lsat_1_v5_gn_0_17581 Lactuca sativa HOM05D000524 ORTHO05D011576 7.3e-07 60.5 50 52.0
Lsat_1_v5_gn_0_21360 Lactuca sativa HOM05D001049 ORTHO05D015148 7.3e-07 60.5 63 47.6
Lsat_1_v5_gn_8_47340 Lactuca sativa HOM05D003889 ORTHO05D002785 7.3e-07 60.5 59 45.8
SMO367G1197 Selaginella moellendorffii HOM05D000001 ORTHO05D000003 7.3e-07 60.5 277 23.8
Lsat_1_v5_gn_4_72121 Lactuca sativa HOM05D018531 ORTHO05D011576 9.6e-07 60.1 63 47.6
Lsat_1_v5_gn_1_92720 Lactuca sativa HOM05D001336 ORTHO05D011576 1.3e-06 59.7 64 45.3
Lsat_1_v5_gn_9_108561 Lactuca sativa HOM05D018531 ORTHO05D011576 1.3e-06 59.7 59 45.8
Lsat_1_v5_gn_1_96520 Lactuca sativa HOM05D007053 ORTHO05D008922 1.6e-06 59.3 50 52.0
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 2.1e-06 58.9 155 23.9
Lsat_1_v5_gn_2_68420 Lactuca sativa HOM05D005833 ORTHO05D011576 2.1e-06 58.9 63 47.6
AagrBONN_evm.TU.Sc2ySwM_344.2113 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.8e-06 58.5 287 21.6
BraA04t16544Z Brassica rapa HOM05D000001 ORTHO05D000003 2.8e-06 58.5 355 22.8
Lsat_1_v5_gn_5_162860 Lactuca sativa HOM05D001044 ORTHO05D006993 2.8e-06 58.5 52 48.1
Actinidia04475 Actinidia chinensis HOM05D000162 ORTHO05D000090 3.6e-06 58.2 118 24.6
AagrBONN_evm.TU.Sc2ySwM_368.2725 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.6e-06 58.2 290 21.7
Lsat_1_v5_gn_5_40941 Lactuca sativa HOM05D002610 ORTHO05D011576 3.6e-06 58.2 52 48.1
PSO017G5475 Papaver somniferum HOM05D006258 ORTHO05D007961 3.6e-06 58.2 267 21.7
BcaB03g16056 Brassica carinata HOM05D000001 ORTHO05D000003 4.8e-06 57.8 391 21.7
Gohir.A08G088300 Gossypium hirsutum HOM05D006258 ORTHO05D007961 4.8e-06 57.8 234 18.8
Lsat_1_v5_gn_6_70320 Lactuca sativa HOM05D001049 ORTHO05D015148 4.8e-06 57.8 63 47.6
Lsat_1_v5_gn_7_70041 Lactuca sativa HOM05D018531 ORTHO05D011576 4.8e-06 57.8 49 51.0
SMO115G0023 Selaginella moellendorffii HOM05D000001 ORTHO05D000003 4.8e-06 57.8 520 21.2
Ciclev10000854m.g Citrus clementina HOM05D000001 ORTHO05D009739 6.2e-06 57.4 274 22.3
Lsat_1_v5_gn_4_20761 Lactuca sativa HOM05D002313 ORTHO05D014289 6.2e-06 57.4 104 33.7
Thecc.05G206300 Theobroma cacao HOM05D000001 ORTHO05D000003 6.2e-06 57.4 319 21.6
arahy.Tifrunner.gnm1.ann1.9BU3J2 Arachis hypogaea HOM05D000103 ORTHO05D000049 8.1e-06 57.0 138 28.3
CANSAT56G4335 Cannabis sativa HOM05D004783 ORTHO05D005581 8.1e-06 57.0 354 22.6
SalBow1G3819 Salvia bowleyana HOM05D000162 ORTHO05D000090 8.1e-06 57.0 145 26.2
TAR629G1245 Trochodendron aralioides HOM05D018609 ORTHO05D019561 8.1e-06 57.0 123 26.0


User provided reference genes

Program Settings