Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0012499 Lotus japonicus HOM05D001104 ORTHO05D006624 5.7e-239 830.5 410 100.0
Medtr6g007040 Medicago truncatula HOM05D001104 ORTHO05D006624 6.8e-208 727.2 429 82.5
Glyma.19G007900 Glycine max HOM05D001104 ORTHO05D006624 1.6e-204 716.1 425 82.8
arahy.Tifrunner.gnm1.ann1.PA6DSG Arachis hypogaea HOM05D001104 ORTHO05D006624 6.0e-204 714.1 425 81.2
VMungo0464G0407 Vigna mungo HOM05D001104 ORTHO05D006624 6.8e-200 700.7 426 79.8
Phvul.004G013700 Phaseolus vulgaris HOM05D001104 ORTHO05D006624 1.2e-199 699.9 427 80.3
arahy.Tifrunner.gnm1.ann1.S5BZSG Arachis hypogaea HOM05D001104 ORTHO05D006624 1.1e-197 693.3 445 76.6
Ca_04192_v3 Cicer arietinum L. HOM05D001104 ORTHO05D006624 3.2e-197 691.8 424 80.2
Lalb_Chr06g0176011 Lupinus albus HOM05D001104 ORTHO05D006624 2.5e-194 682.2 431 78.7
Cpa.g.sc215.8 Carica papaya HOM05D001104 ORTHO05D006624 2.8e-185 652.1 410 74.9
CsaV3_5G027380 Cucumis sativus L. HOM05D001104 ORTHO05D006624 5.8e-183 644.4 430 72.6
Atru.chr6.2305 Acer truncatum HOM05D001104 ORTHO05D006624 1.7e-182 642.9 428 72.7
Dinv35069 Davidia involucrata HOM05D001104 ORTHO05D006624 6.4e-182 641.0 428 72.7
TWI12G0063 Tripterygium wilfordii HOM05D001104 ORTHO05D006624 8.4e-182 640.6 428 72.0
MELO3C021546.2 Cucumis melo HOM05D001104 ORTHO05D006624 2.4e-181 639.0 430 72.1
Ciclev10015353m.g Citrus clementina HOM05D001104 ORTHO05D006624 4.2e-181 638.3 428 71.5
Eucgr.I01793 Eucalyptus grandis HOM05D001104 ORTHO05D006624 4.2e-181 638.3 428 73.6
Hma1.2p1_0993F.1_g245480 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 1.6e-180 636.3 427 72.6
Sed0005946 Sechium edule HOM05D001104 ORTHO05D006624 2.1e-180 636.0 428 71.3
Potri.001G348700 Populus trichocarpa HOM05D001104 ORTHO05D006624 2.3e-179 632.5 410 74.4
Haze_14675 Corylus avellana HOM05D001104 ORTHO05D006624 3.0e-179 632.1 408 73.8
CiPaw.03G038600 Carya illinoinensis HOM05D001104 ORTHO05D006624 6.6e-179 630.9 428 71.0
Dinv33487 Davidia involucrata HOM05D001104 ORTHO05D006624 5.6e-178 627.9 425 71.3
Thecc.04G010000 Theobroma cacao HOM05D001104 ORTHO05D006624 5.6e-178 627.9 428 70.6
Duzib147G0036 Durio zibethinus HOM05D001104 ORTHO05D006624 9.6e-178 627.1 427 70.7
Rhsim10G0021500 Rhododendron simsii HOM05D001104 ORTHO05D006624 9.6e-178 627.1 428 70.3
Actinidia06020 Actinidia chinensis HOM05D001104 ORTHO05D006624 2.1e-177 625.9 428 71.3
CSS0039746 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 2.1e-177 625.9 428 70.6
Prupe.3G285400 Prunus persica HOM05D001104 ORTHO05D006624 2.8e-177 625.5 419 71.6
Cc07_g02180 Coffea canephora HOM05D001104 ORTHO05D006624 3.1e-176 622.1 410 72.9
CSS0024274 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 2.6e-175 619.0 432 69.7
TAR374G1405 Trochodendron aralioides HOM05D001104 ORTHO05D006624 4.4e-175 618.2 428 69.2
Actinidia35743 Actinidia chinensis HOM05D001104 ORTHO05D006624 1.7e-174 616.3 428 69.9
Nitab4.5_0001709g0040 Nicotiana tabacum HOM05D001104 ORTHO05D006624 4.9e-174 614.8 410 70.7
Solyc02g067740.4 Solanum lycopersicum HOM05D001104 ORTHO05D006624 1.9e-173 612.8 411 71.0
Oeu062922.1 Olea europaea HOM05D001104 ORTHO05D006624 2.4e-173 612.5 410 70.0
Migut.H00115 Erythranthe guttata HOM05D001104 ORTHO05D006624 3.2e-173 612.1 420 70.2
CAN.G973.9 Capsicum annuum HOM05D001104 ORTHO05D006624 5.4e-173 611.3 410 70.7
Sopen02g016860 Solanum pennellii HOM05D001104 ORTHO05D006624 1.2e-172 610.1 411 70.8
PGSC0003DMG400006955 Solanum tuberosum HOM05D001104 ORTHO05D006624 3.5e-172 608.6 411 70.8
MD17G1034200 Malus domestica HOM05D001104 ORTHO05D006624 6.0e-172 607.8 431 67.3
MSTRG.15512 Avicennia marina HOM05D001104 ORTHO05D006624 1.1e-170 603.6 428 66.8
Gorai.001G262300 Gossypium raimondii HOM05D001104 ORTHO05D006624 7.3e-170 600.9 428 67.5
SalBow1G5303 Salvia bowleyana HOM05D001104 ORTHO05D006624 1.1e-168 597.0 411 69.1
Nn4g22776 Nelumbo nucifera HOM05D001104 ORTHO05D006624 2.4e-168 595.9 429 66.0
QL02p076349 Quercus lobata HOM05D001104 ORTHO05D006624 5.3e-168 594.7 429 67.6
Gohir.A07G220700 Gossypium hirsutum HOM05D001104 ORTHO05D006624 6.9e-168 594.3 428 66.8
COL.COLO4_28978 Corchorus olitorius HOM05D001104 ORTHO05D006624 1.5e-167 593.2 451 66.3
CANSAT64G0855 Cannabis sativa HOM05D001104 ORTHO05D006624 5.8e-167 591.3 428 67.5
ClCG09G018970 Citrullus lanatus HOM05D001104 ORTHO05D006624 1.7e-166 589.7 462 63.6
RcHm_v2.0_Chr2g0171701 Rosa chinensis HOM05D001104 ORTHO05D006624 6.4e-166 587.8 443 65.9
Hma1.2p1_3249F.1_g334430 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 1.1e-165 587.0 387 72.6
PGR142G0881 Punica granatum HOM05D001104 ORTHO05D006624 1.9e-165 586.3 414 67.9
Peaxi162Scf00933g00005 Petunia axillaris HOM05D001104 ORTHO05D006624 7.1e-165 584.3 385 71.2
GSVIVG01032469001 Vitis vinifera HOM05D001104 ORTHO05D006624 9.3e-165 583.9 428 65.7
ECA238G2799 Erigeron canadensis HOM05D001104 ORTHO05D006624 6.0e-164 581.3 422 65.6
vmacro05831 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 6.0e-164 581.3 436 65.6
Cfa007422 Carpinus fangiana HOM05D001104 ORTHO05D006624 7.9e-164 580.9 374 74.6
FAN14G0697 Fragaria x ananassa HOM05D001104 ORTHO05D006624 7.9e-164 580.9 426 66.4
FvH4_6g50760 Fragaria vesca HOM05D001104 ORTHO05D006624 1.0e-163 580.5 426 66.4
HanXRQChr14g0450311 Helianthus annuus HOM05D001104 ORTHO05D006624 1.3e-163 580.1 427 64.4
PSO478G3469 Papaver somniferum HOM05D001104 ORTHO05D006624 3.0e-163 578.9 410 68.8
DCAR_011201 Daucus carota HOM05D001104 ORTHO05D006624 3.9e-163 578.6 378 71.2
FAN05G2035 Fragaria x ananassa HOM05D001104 ORTHO05D006624 1.1e-162 577.0 441 64.4
ECA232G2826 Erigeron canadensis HOM05D001104 ORTHO05D006624 1.6e-161 573.2 419 64.9
Lj7C592G4 Lonicera japonica HOM05D001104 ORTHO05D006624 6.2e-161 571.2 410 66.6
HanXRQChr09g0266171 Helianthus annuus HOM05D001104 ORTHO05D006624 8.1e-161 570.9 410 65.9
Aqoxy3G01030 Aquilegia oxysepala HOM05D001104 ORTHO05D006624 1.1e-160 570.5 411 67.9
Gohir.D07G227400 Gossypium hirsutum HOM05D001104 ORTHO05D006624 5.3e-160 568.2 378 70.4
DCAR_015045 Daucus carota HOM05D001104 ORTHO05D006624 1.7e-158 563.1 452 60.6
THA.LOC104825337 Tarenaya hassleriana HOM05D001104 ORTHO05D006624 1.7e-158 563.1 413 65.4
MD09G1032600 Malus domestica HOM05D001104 ORTHO05D006624 3.8e-158 562.0 432 63.9
Sp2g16980 Schrenkiella parvula HOM05D001104 ORTHO05D006624 6.0e-156 554.7 412 64.8
BcaC06g30950 Brassica carinata HOM05D001104 ORTHO05D006624 7.9e-156 554.3 413 64.9
BcaC06g33770 Brassica carinata HOM05D001104 ORTHO05D006624 1.3e-155 553.5 412 65.0
C07p37130 Brassica napus HOM05D001104 ORTHO05D006624 1.3e-155 553.5 412 65.0
Psat1g057160 Pisum sativum HOM05D001104 ORTHO05D006624 1.3e-155 553.5 299 88.3
Thhalv10004293m.g Eutrema salsugineum HOM05D001104 ORTHO05D006624 9.6e-154 547.4 411 65.5
PSO017G6424 Papaver somniferum HOM05D001104 ORTHO05D006624 5.8e-151 538.1 408 65.2
MBI16_g05636_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006624 3.8e-150 535.4 397 64.2
AL5G17430 Arabidopsis lyrata HOM05D001104 ORTHO05D006624 1.4e-149 533.5 421 61.5
Carub.0005s0650 Capsella rubella HOM05D001104 ORTHO05D006624 9.3e-149 530.8 425 61.2
CARHR149500 Cardamine hirsuta HOM05D001104 ORTHO05D006624 9.3e-149 530.8 416 62.3
AT3G27930 Arabidopsis thaliana HOM05D001104 ORTHO05D006624 1.2e-148 530.4 421 62.0
SGA_v2.0_scaffold135G34875 Striga asiatica HOM05D001104 ORTHO05D006624 6.1e-148 528.1 367 70.6
Manes.17G117000 Manihot esculenta HOM05D001104 ORTHO05D006624 1.5e-146 523.5 395 66.8
FAN02G3192 Fragaria x ananassa HOM05D001104 ORTHO05D006624 9.0e-144 514.2 496 55.0
Lsat_1_v5_gn_4_182480 Lactuca sativa HOM05D001104 ORTHO05D006624 4.5e-143 511.9 410 61.5
ATR0730G148 Amborella trichopoda HOM05D001104 ORTHO05D006624 3.8e-142 508.8 428 58.2
EL10Ac4g08579 Beta vulgaris HOM05D001104 ORTHO05D006624 5.5e-141 505.0 424 57.8
Aa31LG2G4840 Aethionema arabicum HOM05D001104 ORTHO05D006285 6.1e-140 501.5 354 66.9
Os05g0577800 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 3.9e-139 498.8 425 56.7
Sc03g0007930 Simmondsia chinensis HOM05D001104 ORTHO05D006624 2.9e-134 482.6 344 68.0
Oeu043054.1 Olea europaea HOM05D001104 ORTHO05D006285 6.5e-134 481.5 376 63.0
CSS0016338 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 8.5e-134 481.1 456 57.0
CDE06G1183 Ceratophyllum demersum HOM05D001104 ORTHO05D006624 5.7e-130 468.4 425 55.8
HPP92_024321 Vanilla planifolia HOM05D001104 ORTHO05D006285 5.3e-128 461.8 354 61.6
Nitab4.5_0001125g0070 Nicotiana tabacum HOM05D001104 ORTHO05D006624 5.2e-123 445.3 412 55.6
vmacro18250 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 2.8e-121 439.5 425 54.4
CSS0012459 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 1.7e-118 430.3 418 55.0
BcaC03g17495 Brassica carinata HOM05D001104 ORTHO05D006624 1.9e-117 426.8 394 55.6
Os05g0577900 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 8.8e-115 417.9 413 51.3
unitig_899.g15491 Utricularia gibba HOM05D000928 ORTHO05D001186 6.3e-113 411.8 398 50.8
AUR62029365 Chenopodium quinoa HOM05D001104 ORTHO05D006624 1.8e-107 393.7 307 61.6
A06p40770 Brassica napus HOM05D001104 ORTHO05D006624 1.1e-101 374.4 274 66.1
BolC7t44224H Brassica oleracea HOM05D001104 ORTHO05D006624 1.5e-101 374.0 273 66.3
BraA06t26998Z Brassica rapa HOM05D001104 ORTHO05D006624 3.3e-101 372.9 273 65.9
C02p54520 Brassica napus HOM05D001104 ORTHO05D006624 5.9e-95 352.1 421 46.6
AagrBONN_evm.TU.Sc2ySwM_340.221 Anthoceros agrestis HOM05D001104 ORTHO05D006624 1.0e-91 341.3 419 43.0
C02p54570 Brassica napus HOM05D001104 ORTHO05D006624 5.2e-91 339.0 441 44.2
Rhsim08G0054100 Rhododendron simsii HOM05D001104 ORTHO05D006285 4.4e-90 335.9 423 46.3
TPR.G2265 Trifolium pratense HOM05D001104 ORTHO05D006624 6.4e-89 332.0 206 77.7
HanXRQChr06g0175561 Helianthus annuus HOM05D001104 ORTHO05D006624 2.7e-87 326.6 284 58.5
Zm00001eb344500 Zea mays HOM05D001104 ORTHO05D006624 1.7e-86 323.9 269 58.4
Pp3c25_9610 Physcomitrium patens HOM05D001104 ORTHO05D006624 5.0e-86 322.4 413 41.6
BolC2t11515H Brassica oleracea HOM05D001104 ORTHO05D006624 3.1e-83 313.2 297 53.2
AUR62043218 Chenopodium quinoa HOM05D001104 ORTHO05D006624 9.8e-82 308.1 428 42.8
Hund10304 Selenicereus undatus HOM05D001104 ORTHO05D006624 5.2e-75 285.8 258 55.8
A02p35680 Brassica napus HOM05D001104 ORTHO05D006624 1.3e-70 271.2 336 44.6
Psat0s3401g0080 Pisum sativum HOM05D001104 ORTHO05D006624 2.0e-66 257.3 145 85.5
BraA02t08571Z Brassica rapa HOM05D001104 ORTHO05D006624 2.1e-52 210.7 186 57.5
BolC2t11520H Brassica oleracea HOM05D001104 ORTHO05D006624 1.5e-45 188.0 314 39.2
Cfa008567 Carpinus fangiana HOM05D001104 ORTHO05D006624 4.9e-41 172.9 143 60.1
A06p40780 Brassica napus HOM05D001104 ORTHO05D006624 1.4e-40 171.4 122 64.8
Glyma.05G007402 Glycine max HOM05D001104 ORTHO05D006624 1.4e-40 171.4 128 68.0
BraA02t08570Z Brassica rapa HOM05D001104 ORTHO05D006624 9.6e-37 158.7 108 67.6
Psat1g219520 Pisum sativum HOM05D001104 ORTHO05D006624 4.8e-36 156.4 90 83.3
Oeu043225.1 Olea europaea HOM05D003428 ORTHO05D006624 3.9e-30 136.7 93 66.7
Oeu051906.1 Olea europaea HOM05D003428 ORTHO05D006624 3.9e-30 136.7 93 66.7
SEGI_13753 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 1.6e-28 131.3 148 43.2
Actinidia36089 Actinidia chinensis HOM05D001104 ORTHO05D006624 1.1e-19 102.1 68 72.1
Thecc.04G111800 Theobroma cacao HOM05D001104 ORTHO05D006624 5.3e-19 99.8 85 54.1
Cfa008566 Carpinus fangiana HOM05D001104 ORTHO05D006624 7.7e-18 95.9 67 71.6
HanXRQChr16g0517041 Helianthus annuus HOM05D001104 ORTHO05D006624 2.2e-17 94.4 79 55.7
TPR.G18830 Trifolium pratense HOM05D001104 ORTHO05D006624 3.3e-13 80.5 44 86.4
SEGI_37884 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 7.4e-13 79.3 74 51.4
Cre08.g358552 Chlamydomonas reinhardtii HOM05D001104 ORTHO05D006624 2.2e-09 67.8 134 31.3
Sopen07g006450 Solanum pennellii HOM05D001104 ORTHO05D006624 7.2e-08 62.8 43 58.1
SEGI_12261 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 2.1e-07 61.2 64 50.0


User provided reference genes

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