Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0011086 Lotus japonicus HOM05D004737 ORTHO05D005623 2.8e-112 408.7 211 100.0
VMungo1215G1017 Vigna mungo HOM05D004737 ORTHO05D005623 1.2e-70 270.4 172 74.4
Phvul.002G157400 Phaseolus vulgaris HOM05D004737 ORTHO05D005623 1.7e-69 266.5 166 78.3
arahy.Tifrunner.gnm1.ann1.1HA888 Arachis hypogaea HOM05D004737 ORTHO05D005623 1.2e-67 260.4 169 76.9
TPR.G6698 Trifolium pratense HOM05D004737 ORTHO05D005623 4.3e-65 251.9 166 71.1
Glyma.01G219700 Glycine max HOM05D004737 ORTHO05D005623 9.6e-65 250.8 172 73.3
MD14G1103600 Malus domestica HOM05D004737 ORTHO05D005623 1.1e-63 247.3 172 71.5
QL12p034148 Quercus lobata HOM05D004737 ORTHO05D005623 6.9e-63 244.6 171 70.8
QL12p034121 Quercus lobata HOM05D000005 ORTHO05D000833 9.0e-63 244.2 171 70.2
Hma1.2p1_0896F.1_g233940 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 5.8e-62 241.5 172 66.3
GSVIVG01019762001 Vitis vinifera HOM05D004737 ORTHO05D005623 1.7e-61 240.0 166 71.1
Prupe.5G098900 Prunus persica HOM05D004737 ORTHO05D005623 3.8e-61 238.8 171 68.4
Lalb_Chr09g0321031 Lupinus albus HOM05D004737 ORTHO05D005623 4.9e-61 238.4 164 73.2
QL12p033263 Quercus lobata HOM05D004737 ORTHO05D005623 8.4e-61 237.7 171 69.6
QL12p034065 Quercus lobata HOM05D004737 ORTHO05D005623 8.4e-61 237.7 171 69.6
vmacro11322 Vaccinium macrocarpon HOM05D004737 ORTHO05D005623 1.1e-60 237.3 165 69.1
arahy.Tifrunner.gnm1.ann1.4Y2W44 Arachis hypogaea HOM05D004737 ORTHO05D005623 5.4e-60 235.0 160 74.4
Rhsim02G0228600 Rhododendron simsii HOM05D004737 ORTHO05D005623 5.4e-60 235.0 165 68.5
CSS0013453 Camellia sinensis var. sinensis HOM05D004737 ORTHO05D005623 9.3e-60 234.2 166 70.5
Potri.001G104800 Populus trichocarpa HOM05D004737 ORTHO05D005623 2.1e-59 233.0 172 64.5
Dinv38949 Davidia involucrata HOM05D004737 ORTHO05D005623 2.7e-59 232.6 173 65.9
RcHm_v2.0_Chr7g0197851 Rosa chinensis HOM05D004737 ORTHO05D005623 2.7e-59 232.6 166 68.7
EL10Ac6g13984 Beta vulgaris HOM05D004737 ORTHO05D005623 7.9e-59 231.1 164 68.3
Lj8A232T63 Lonicera japonica HOM05D004737 ORTHO05D005623 1.8e-58 229.9 172 64.5
Duzib084G0936 Durio zibethinus HOM05D004737 ORTHO05D005623 2.3e-58 229.6 172 64.5
Manes.02G022400 Manihot esculenta HOM05D004737 ORTHO05D005623 2.3e-58 229.6 165 66.7
Cc08_g14650 Coffea canephora HOM05D004737 ORTHO05D005623 3.0e-58 229.2 173 67.1
TAR625G0056 Trochodendron aralioides HOM05D004737 ORTHO05D005623 6.7e-58 228.0 166 66.3
AUR62010668 Chenopodium quinoa HOM05D004737 ORTHO05D005623 8.7e-58 227.6 164 67.7
PGR042G1084 Punica granatum HOM05D004737 ORTHO05D005623 1.9e-57 226.5 173 64.7
SGA_v2.0_scaffold253G45138 Striga asiatica HOM05D004737 ORTHO05D005623 3.3e-57 225.7 170 62.9
Haze_08850 Corylus avellana HOM05D004737 ORTHO05D005623 9.6e-57 224.2 161 69.6
TWI38G1747 Tripterygium wilfordii HOM05D004737 ORTHO05D005623 9.6e-57 224.2 172 64.5
AUR62017215 Chenopodium quinoa HOM05D004737 ORTHO05D005623 2.1e-56 223.0 164 67.1
Gorai.004G211600 Gossypium raimondii HOM05D004737 ORTHO05D005623 2.1e-56 223.0 168 63.7
Lsat_1_v5_gn_3_7380 Lactuca sativa HOM05D004737 ORTHO05D005623 2.1e-56 223.0 172 63.4
CsaV3_5G002870 Cucumis sativus L. HOM05D004737 ORTHO05D005623 3.7e-56 222.2 164 64.6
Gohir.D08G200800 Gossypium hirsutum HOM05D004737 ORTHO05D005623 3.7e-56 222.2 167 64.1
Haze_08864 Corylus avellana HOM05D004737 ORTHO05D005623 6.2e-56 221.5 155 71.0
Eucgr.E00582 Eucalyptus grandis HOM05D004737 ORTHO05D005623 8.1e-56 221.1 174 63.2
SalBow5G1266 Salvia bowleyana HOM05D004737 ORTHO05D005623 4.0e-55 218.8 164 62.8
Gohir.A08G182200 Gossypium hirsutum HOM05D004737 ORTHO05D005623 6.9e-55 218.0 164 64.0
MSTRG.25602 Avicennia marina HOM05D004737 ORTHO05D005623 1.5e-54 216.9 168 63.7
Sabra01G0079500 Salix brachista HOM05D004737 ORTHO05D005623 1.5e-54 216.9 207 54.1
ECA246G0717 Erigeron canadensis HOM05D004737 ORTHO05D005623 3.4e-54 215.7 172 59.9
Nn5g30495 Nelumbo nucifera HOM05D004737 ORTHO05D005623 4.5e-54 215.3 167 64.7
FvH4_5g02300 Fragaria vesca HOM05D004737 ORTHO05D005623 1.0e-53 214.2 166 63.3
Sed0019193 Sechium edule HOM05D004737 ORTHO05D005623 3.8e-53 212.2 164 64.0
Thecc.03G277700 Theobroma cacao HOM05D004737 ORTHO05D005623 4.9e-53 211.8 182 59.9
Ah.02g116610 Amaranthus hybridus HOM05D000756 ORTHO05D000604 6.5e-53 211.5 151 68.9
HanXRQChr06g0165541 Helianthus annuus HOM05D004737 ORTHO05D005623 8.4e-53 211.1 173 61.3
Nitab4.5_0001215g0220 Nicotiana tabacum HOM05D004737 ORTHO05D005623 5.5e-52 208.4 165 60.6
Nitab4.5_0010794g0020 Nicotiana tabacum HOM05D004737 ORTHO05D005623 7.1e-52 208.0 165 60.0
MELO3C005669.2 Cucumis melo HOM05D004737 ORTHO05D005623 1.6e-51 206.8 164 61.0
COL.COLO4_34453 Corchorus olitorius HOM05D004737 ORTHO05D005623 2.1e-51 206.5 164 59.8
Atru.chr2.2103 Acer truncatum HOM05D004737 ORTHO05D005623 8.7e-50 201.1 166 62.0
CiPaw.11G135900 Carya illinoinensis HOM05D004737 ORTHO05D005623 8.7e-50 201.1 169 60.9
Psat0s3411g0080 Pisum sativum HOM05D004737 ORTHO05D005623 8.7e-50 201.1 166 62.0
Aqoxy6G02772 Aquilegia oxysepala HOM05D004737 ORTHO05D005623 1.1e-49 200.7 163 63.2
Hma1.2p1_0896F.1_g233950 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 1.1e-49 200.7 172 58.7
DCAR_008401 Daucus carota HOM05D004737 ORTHO05D005623 3.3e-49 199.1 155 61.9
Ciclev10006013m.g Citrus clementina HOM05D004737 ORTHO05D005623 7.4e-49 198.0 156 62.2
PGSC0003DMG400031232 Solanum tuberosum HOM05D004737 ORTHO05D005623 7.4e-49 198.0 164 58.5
CANSAT21G0205 Cannabis sativa HOM05D004737 ORTHO05D005623 9.6e-49 197.6 169 58.6
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 9.6e-49 197.6 169 57.4
ClCG01G002790 Citrullus lanatus HOM05D004737 ORTHO05D005623 2.8e-48 196.1 155 62.6
ATR0782G239 Amborella trichopoda HOM05D004737 ORTHO05D005623 1.8e-47 193.4 167 57.5
Solyc10g074990.2 Solanum lycopersicum HOM05D004737 ORTHO05D005623 1.8e-47 193.4 164 57.3
HPP92_015901 Vanilla planifolia HOM05D004737 ORTHO05D005623 1.8e-47 193.4 170 55.3
Sopen10g027480 Solanum pennellii HOM05D004737 ORTHO05D005623 5.3e-47 191.8 164 56.7
Peaxi162Scf00198g00034 Petunia axillaris HOM05D004737 ORTHO05D005623 6.9e-47 191.4 181 52.5
CAN.G1149.8 Capsicum annuum HOM05D004737 ORTHO05D005623 5.8e-46 188.3 169 56.2
BcaC02g09203 Brassica carinata HOM05D004737 ORTHO05D005623 2.9e-45 186.0 181 51.4
C04p40020 Brassica napus HOM05D004737 ORTHO05D005623 2.9e-45 186.0 181 51.4
BolC4t25575H Brassica oleracea HOM05D004737 ORTHO05D005623 2.9e-45 186.0 181 51.4
AT3G52905 Arabidopsis thaliana HOM05D004737 ORTHO05D005623 1.4e-44 183.7 172 52.9
AL5G33690 Arabidopsis lyrata HOM05D004737 ORTHO05D005623 2.5e-44 183.0 172 52.3
A04p06580 Brassica napus HOM05D004737 ORTHO05D005623 2.5e-44 183.0 173 52.6
Os01g0764700 Oryza sativa ssp. japonica HOM05D004737 ORTHO05D005623 3.2e-44 182.6 167 55.7
SHI07123 Sapria himalayana HOM05D004737 ORTHO05D005623 3.2e-44 182.6 166 54.8
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 4.2e-44 182.2 178 52.8
Actinidia14554 Actinidia chinensis HOM05D004737 ORTHO05D005623 5.5e-44 181.8 152 63.2
BraA07t29816Z Brassica rapa HOM05D004737 ORTHO05D005623 7.1e-44 181.4 173 53.2
BraA04t16363Z Brassica rapa HOM05D004737 ORTHO05D005623 9.3e-44 181.0 172 52.3
unitig_88.g27612 Utricularia gibba HOM05D004737 ORTHO05D005623 1.2e-43 180.6 163 55.2
Carub.0005s1938 Capsella rubella HOM05D004737 ORTHO05D005623 2.7e-43 179.5 172 52.3
SGA_v2.0_scaffold96G28950 Striga asiatica HOM05D004737 ORTHO05D005623 4.6e-43 178.7 169 53.3
Thhalv10010768m.g Eutrema salsugineum HOM05D004737 ORTHO05D005623 7.9e-43 177.9 172 51.2
Sp5g09430 Schrenkiella parvula HOM05D004737 ORTHO05D005623 1.0e-42 177.6 172 51.7
BcaB02g08548 Brassica carinata HOM05D004737 ORTHO05D005623 2.3e-42 176.4 173 51.4
CARHR162770 Cardamine hirsuta HOM05D004737 ORTHO05D005623 5.1e-42 175.3 172 51.7
BcaC08g44605 Brassica carinata HOM05D004737 ORTHO05D005623 1.1e-41 174.1 175 52.0
C06p20780 Brassica napus HOM05D004737 ORTHO05D005623 1.5e-41 173.7 175 52.0
BolC6t37261H Brassica oleracea HOM05D004737 ORTHO05D005623 1.5e-41 173.7 175 52.0
Sc07g0009740 Simmondsia chinensis HOM05D004737 ORTHO05D005623 1.5e-41 173.7 124 67.7
THA.LOC104805035 Tarenaya hassleriana HOM05D004737 ORTHO05D005623 9.7e-41 171.0 178 49.4
Aa31LG10G7820 Aethionema arabicum HOM05D004737 ORTHO05D005623 6.3e-40 168.3 168 52.4
Migut.A00772 Erythranthe guttata HOM05D004737 ORTHO05D005623 5.5e-36 155.2 118 64.4
PSO675G2933 Papaver somniferum HOM05D004737 ORTHO05D005623 9.7e-33 144.4 179 43.0
PSO541G1514 Papaver somniferum HOM05D004737 ORTHO05D005623 1.3e-32 144.1 179 44.1
ECA246G4230 Erigeron canadensis HOM05D004737 ORTHO05D005623 5.3e-31 138.7 170 41.2
Glyma.11G023800 Glycine max HOM05D004737 ORTHO05D005623 5.9e-30 135.2 112 65.2
Atru.chr11.10 Acer truncatum HOM05D004737 ORTHO05D005623 4.2e-28 129.0 167 42.5
Atru.chr1.3074 Acer truncatum HOM05D004737 ORTHO05D005623 5.7e-25 118.6 178 38.2
Atru.chr2.774 Acer truncatum HOM05D004737 ORTHO05D005623 7.4e-25 118.2 174 36.8
Psat2g182280 Pisum sativum HOM05D004737 ORTHO05D005623 1.7e-24 117.1 71 77.5
Atru.chr6.144 Acer truncatum HOM05D004737 ORTHO05D005623 2.8e-24 116.3 181 38.7
Atru.chr6.77 Acer truncatum HOM05D004737 ORTHO05D005623 6.3e-24 115.2 182 39.6
SEGI_05186 Sequoiadendron giganteum HOM05D004737 ORTHO05D005623 1.1e-23 114.4 117 53.0
BcaB02g07803 Brassica carinata HOM05D004737 ORTHO05D005623 2.4e-23 113.2 111 49.5
Atru.chr6.169 Acer truncatum HOM05D004737 ORTHO05D005623 1.0e-21 107.8 165 40.6
Eucgr.E00580 Eucalyptus grandis HOM05D004737 ORTHO05D005623 1.3e-21 107.5 77 67.5
Atru.chr5.3476 Acer truncatum HOM05D004737 ORTHO05D005623 5.0e-21 105.5 183 38.3
Zm00001eb152210 Zea mays HOM05D004737 ORTHO05D005623 8.5e-21 104.8 108 54.6
Atru.chr13.1180 Acer truncatum HOM05D004737 ORTHO05D005623 1.5e-20 104.0 170 37.6
Atru.chr1.3075 Acer truncatum HOM05D004737 ORTHO05D005623 4.2e-20 102.4 184 34.2
Atru.chr1.4031 Acer truncatum HOM05D004737 ORTHO05D005623 5.5e-20 102.1 179 33.0
Atru.chr13.1520 Acer truncatum HOM05D004737 ORTHO05D005623 4.0e-18 95.9 188 34.0
AagrBONN_evm.TU.Sc2ySwM_362.2040 Anthoceros agrestis HOM05D004737 ORTHO05D005623 5.2e-18 95.5 145 35.2
Cpa.g.sc128.49 Carica papaya HOM05D004737 ORTHO05D005623 1.1e-17 94.4 72 61.1
Atru.chr2.781 Acer truncatum HOM05D004737 ORTHO05D005623 2.6e-17 93.2 165 32.7
Atru.chr1.4028 Acer truncatum HOM05D004737 ORTHO05D005623 9.7e-17 91.3 166 32.5
CBR_g78868 Chara braunii HOM05D000019 ORTHO05D000048 9.7e-17 91.3 144 38.9
Pp3c24_17350 Physcomitrium patens HOM05D004737 ORTHO05D005623 2.2e-16 90.1 165 35.2
Mapoly0022s0110 Marchantia polymorpha HOM05D004737 ORTHO05D005623 8.2e-16 88.2 140 37.9
Atru.chr1.3076 Acer truncatum HOM05D005378 ORTHO05D006986 1.8e-15 87.0 181 32.6
ECA240G3910 Erigeron canadensis HOM05D004737 ORTHO05D005623 2.4e-15 86.7 164 30.5
Atru.chr11.9 Acer truncatum HOM05D004737 ORTHO05D005623 3.1e-15 86.3 169 35.5
FAN04G3051 Fragaria x ananassa HOM05D004737 ORTHO05D005623 3.5e-14 82.8 71 59.2
Atru.chr12.1179 Acer truncatum HOM05D004737 ORTHO05D005623 2.9e-13 79.7 177 32.2
Atru.chr4.898 Acer truncatum HOM05D004737 ORTHO05D005623 1.5e-12 77.4 174 28.7
Atru.chr4.1971 Acer truncatum HOM05D004737 ORTHO05D005623 5.5e-12 75.5 168 31.5
QL12p033469 Quercus lobata HOM05D004737 ORTHO05D005623 5.5e-12 75.5 47 78.7
Atru.chr4.1970 Acer truncatum HOM05D004737 ORTHO05D005623 9.4e-12 74.7 168 31.0
ECA240G0629 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.2e-11 74.3 109 39.4
ECA248G3864 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.2e-11 74.3 154 29.9
Atru.chr7.1970 Acer truncatum HOM05D004737 ORTHO05D005623 1.6e-11 73.9 146 34.9
Atru.chr6.95 Acer truncatum HOM05D004737 ORTHO05D005623 2.3e-10 70.1 116 40.5
Atru.chr8.895 Acer truncatum HOM05D004737 ORTHO05D005623 2.3e-10 70.1 171 27.5
Atru.chr12.1177 Acer truncatum HOM05D004737 ORTHO05D005623 4.0e-10 69.3 168 29.2
Atru.chr2.779 Acer truncatum HOM05D004737 ORTHO05D005623 4.0e-10 69.3 179 27.4
Atru.chr5.3478 Acer truncatum HOM05D004737 ORTHO05D005623 4.0e-10 69.3 125 36.0
Atru.chr4.1967 Acer truncatum HOM05D004737 ORTHO05D005623 5.2e-10 68.9 108 37.0
Atru.chr12.1688 Acer truncatum HOM05D004737 ORTHO05D005623 6.8e-10 68.6 132 33.3
Atru.chr12.1697 Acer truncatum HOM05D004737 ORTHO05D005623 1.2e-09 67.8 159 28.9
Atru.chr3.997 Acer truncatum HOM05D004737 ORTHO05D005623 5.7e-09 65.5 126 31.7
Medtr5g038850 Medicago truncatula HOM05D004737 ORTHO05D005623 9.8e-09 64.7 128 32.0
Atru.chr7.1971 Acer truncatum HOM05D004737 ORTHO05D005623 2.8e-08 63.2 130 31.5
Atru.chr1.4012 Acer truncatum HOM05D004737 ORTHO05D005623 4.8e-08 62.4 152 28.3
Atru.chr1.4019 Acer truncatum HOM05D002880 ORTHO05D005623 8.3e-08 61.6 104 39.4


User provided reference genes

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