Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0010828 Lotus japonicus HOM05D004138 ORTHO05D004898 6.9e-122 440.7 223 100.0
VMungo0720G1944 Vigna mungo HOM05D004138 ORTHO05D004898 2.1e-62 243.0 211 65.9
VMungo0720G0383 Vigna mungo HOM05D004138 ORTHO05D004898 1.0e-61 240.7 167 77.2
Ca_26329_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 1.4e-61 240.4 167 76.0
Psat6g207600 Pisum sativum HOM05D004138 ORTHO05D004898 1.4e-61 240.4 217 62.2
Psat6g050360 Pisum sativum HOM05D004138 ORTHO05D004898 1.8e-61 240.0 167 76.0
TPR.G34563 Trifolium pratense HOM05D004138 ORTHO05D004898 2.3e-61 239.6 167 76.6
arahy.Tifrunner.gnm1.ann1.M0DXBI Arachis hypogaea HOM05D004138 ORTHO05D004898 3.1e-61 239.2 218 62.4
arahy.Tifrunner.gnm1.ann1.WZ653D Arachis hypogaea HOM05D004138 ORTHO05D004898 3.1e-61 239.2 218 62.4
Phvul.007G275100 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 3.1e-61 239.2 211 65.4
arahy.Tifrunner.gnm1.ann1.Y7X6HY Arachis hypogaea HOM05D004138 ORTHO05D004898 4.0e-61 238.8 218 62.4
Lj5g0002897 Lotus japonicus HOM05D004138 ORTHO05D004898 8.9e-61 237.7 167 75.4
Phvul.007G057200 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 8.9e-61 237.7 167 76.0
CiPaw.01G165700 Carya illinoinensis HOM05D004138 ORTHO05D004898 1.2e-60 237.3 167 74.9
Glyma.20G145900 Glycine max HOM05D004138 ORTHO05D004898 1.2e-60 237.3 211 64.0
CiPaw.02G097200 Carya illinoinensis HOM05D004138 ORTHO05D004898 1.5e-60 236.9 167 74.9
Solyc09g076020.3 Solanum lycopersicum HOM05D004138 ORTHO05D004898 1.5e-60 236.9 167 74.9
Sopen09g030850 Solanum pennellii HOM05D004138 ORTHO05D004898 1.5e-60 236.9 167 74.9
Medtr1g103820 Medicago truncatula HOM05D004138 ORTHO05D004898 2.6e-60 236.1 167 74.3
CSS0016260 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 4.4e-60 235.3 167 74.3
CAN.G490.3 Capsicum annuum HOM05D004138 ORTHO05D004898 4.4e-60 235.3 167 74.3
Ca_10902_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 4.4e-60 235.3 167 74.3
Hma1.2p1_1344F.1_g277140 Hydrangea macrophylla HOM05D004138 ORTHO05D004898 4.4e-60 235.3 167 74.3
Lj3A735T49 Lonicera japonica HOM05D004138 ORTHO05D004898 4.4e-60 235.3 167 75.4
Lalb_Chr17g0338611 Lupinus albus HOM05D004138 ORTHO05D004898 4.4e-60 235.3 167 75.4
Atru.ctg752_3.80 Acer truncatum HOM05D004138 ORTHO05D004898 5.8e-60 235.0 167 74.3
Duzib052G0532 Durio zibethinus HOM05D004138 ORTHO05D004898 7.5e-60 234.6 167 74.3
TPR.G5464 Trifolium pratense HOM05D004138 ORTHO05D004898 7.5e-60 234.6 217 62.2
Ciclev10005599m.g Citrus clementina HOM05D004138 ORTHO05D004898 9.8e-60 234.2 167 74.3
DCAR_002386 Daucus carota HOM05D004138 ORTHO05D004898 9.8e-60 234.2 167 74.3
Migut.N00183 Erythranthe guttata HOM05D004138 ORTHO05D004898 9.8e-60 234.2 167 73.7
Eucgr.H03482 Eucalyptus grandis HOM05D004138 ORTHO05D004898 9.8e-60 234.2 167 73.1
PGSC0003DMG400030085 Solanum tuberosum HOM05D004138 ORTHO05D004898 9.8e-60 234.2 167 74.3
Dinv44535 Davidia involucrata HOM05D004138 ORTHO05D004898 1.7e-59 233.4 165 73.9
Gohir.A09G215700 Gossypium hirsutum HOM05D004138 ORTHO05D004898 1.7e-59 233.4 167 73.7
Gohir.D09G218200 Gossypium hirsutum HOM05D004138 ORTHO05D004898 1.7e-59 233.4 167 73.7
Gorai.006G239100 Gossypium raimondii HOM05D004138 ORTHO05D004898 1.7e-59 233.4 167 73.7
Manes.03G178800 Manihot esculenta HOM05D004138 ORTHO05D004898 1.7e-59 233.4 167 74.3
Nn4g26636 Nelumbo nucifera HOM05D004138 ORTHO05D004898 1.7e-59 233.4 167 73.7
Potri.010G087600 Populus trichocarpa HOM05D004138 ORTHO05D004898 1.7e-59 233.4 167 73.7
CANSAT78G2043 Cannabis sativa HOM05D004138 ORTHO05D004898 2.2e-59 233.0 167 74.9
MD16G1193500 Malus domestica HOM05D004138 ORTHO05D004898 2.2e-59 233.0 167 75.4
SalBow3G1121 Salvia bowleyana HOM05D004138 ORTHO05D004898 2.2e-59 233.0 167 73.7
Lalb_Chr10g0096121 Lupinus albus HOM05D004138 ORTHO05D004898 2.9e-59 232.6 167 73.7
Thecc.04G231800 Theobroma cacao HOM05D004138 ORTHO05D004898 2.9e-59 232.6 167 73.7
TWI15G0835 Tripterygium wilfordii HOM05D004138 ORTHO05D004898 2.9e-59 232.6 167 74.3
MSTRG.21855 Avicennia marina HOM05D004138 ORTHO05D004898 3.7e-59 232.3 225 60.4
CARHR098330 Cardamine hirsuta HOM05D004138 ORTHO05D004898 3.7e-59 232.3 167 73.1
ECA238G3454 Erigeron canadensis HOM05D004138 ORTHO05D004898 3.7e-59 232.3 167 72.5
Oeu050278.3 Olea europaea HOM05D004138 ORTHO05D004898 3.7e-59 232.3 167 74.9
PSO210G3182 Papaver somniferum HOM05D004138 ORTHO05D004898 3.7e-59 232.3 167 73.1
Aa31LG8G8990 Aethionema arabicum HOM05D004138 ORTHO05D004898 6.4e-59 231.5 222 60.8
THA.LOC104808545 Tarenaya hassleriana HOM05D004138 ORTHO05D004898 6.4e-59 231.5 167 72.5
CARHR221500 Cardamine hirsuta HOM05D004138 ORTHO05D004898 8.3e-59 231.1 167 72.5
PGR004G1517 Punica granatum HOM05D004138 ORTHO05D004898 8.3e-59 231.1 167 71.9
PSO832G0920 Papaver somniferum HOM05D004138 ORTHO05D004898 1.1e-58 230.7 167 72.5
CSS0012312 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.9e-58 229.9 167 73.7
BcaB06g26344 Brassica carinata HOM05D004138 ORTHO05D004898 2.4e-58 229.6 222 59.9
COL.COLO4_04735 Corchorus olitorius HOM05D004138 ORTHO05D004898 2.4e-58 229.6 168 72.0
Aqoxy2G03389 Aquilegia oxysepala HOM05D004138 ORTHO05D004898 3.2e-58 229.2 167 72.5
MD13G1192800 Malus domestica HOM05D004138 ORTHO05D004898 4.1e-58 228.8 167 74.3
AT3G22425 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 5.4e-58 228.4 167 72.5
Cc03_g03750 Coffea canephora HOM05D004138 ORTHO05D004898 5.4e-58 228.4 167 72.5
Sp3g20190 Schrenkiella parvula HOM05D004138 ORTHO05D004898 5.4e-58 228.4 167 72.5
Carub.0007s2719 Capsella rubella HOM05D004138 ORTHO05D004898 7.0e-58 228.0 167 72.5
DCAR_027216 Daucus carota HOM05D004138 ORTHO05D004898 7.0e-58 228.0 167 73.1
Thhalv10021310m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 7.0e-58 228.0 167 72.5
HanXRQChr09g0265721 Helianthus annuus HOM05D004138 ORTHO05D004898 9.2e-58 227.6 167 71.9
HanXRQChr14g0432251 Helianthus annuus HOM05D004138 ORTHO05D004898 9.2e-58 227.6 167 71.9
BcaB02g07851 Brassica carinata HOM05D004138 ORTHO05D004898 1.2e-57 227.3 167 71.9
BcaC09g49174 Brassica carinata HOM05D004138 ORTHO05D004898 1.2e-57 227.3 166 72.9
CDE07G0326 Ceratophyllum demersum HOM05D004138 ORTHO05D004898 2.0e-57 226.5 167 71.3
AL7G40920 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 2.7e-57 226.1 167 71.9
BcaB04g20518 Brassica carinata HOM05D004138 ORTHO05D004898 2.7e-57 226.1 167 71.9
CsaV3_7G022530 Cucumis sativus L. HOM05D004138 ORTHO05D004898 3.5e-57 225.7 167 71.3
BcaC05g28070 Brassica carinata HOM05D004138 ORTHO05D004898 4.6e-57 225.3 167 71.3
C05p40930 Brassica napus HOM05D004138 ORTHO05D004898 4.6e-57 225.3 167 71.3
FvH4_4g15510 Fragaria vesca HOM05D004138 ORTHO05D004898 4.6e-57 225.3 245 57.1
RcHm_v2.0_Chr4g0416251 Rosa chinensis HOM05D004138 ORTHO05D004898 4.6e-57 225.3 167 72.5
Sp7g13050 Schrenkiella parvula HOM05D004138 ORTHO05D004898 4.6e-57 225.3 167 71.9
Carub.0003s2260 Capsella rubella HOM05D004138 ORTHO05D004898 6.0e-57 224.9 167 72.5
Nitab4.5_0000043g0130 Nicotiana tabacum HOM05D004138 ORTHO05D004898 1.0e-56 224.2 197 65.0
Sed0017770 Sechium edule HOM05D004138 ORTHO05D004898 1.0e-56 224.2 167 71.3
Thhalv10025980m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 1.3e-56 223.8 167 71.3
Nitab4.5_0001560g0020 Nicotiana tabacum HOM05D004138 ORTHO05D004898 1.3e-56 223.8 157 75.2
AUR62033623 Chenopodium quinoa HOM05D004138 ORTHO05D004898 1.7e-56 223.4 166 71.1
Sc10g0004960 Simmondsia chinensis HOM05D004138 ORTHO05D004898 1.7e-56 223.4 167 72.5
Prupe.1G013300 Prunus persica HOM05D004138 ORTHO05D004898 3.9e-56 222.2 159 74.2
ATR0697G231 Amborella trichopoda HOM05D004138 ORTHO05D004898 5.0e-56 221.9 167 68.9
Lsat_1_v5_gn_2_31480 Lactuca sativa HOM05D004138 ORTHO05D004898 1.1e-55 220.7 162 71.0
TAR636G0642 Trochodendron aralioides HOM05D004138 ORTHO05D004898 1.1e-55 220.7 161 72.7
Haze_00903 Corylus avellana HOM05D004138 ORTHO05D004898 1.9e-55 219.9 157 72.0
Cfa015643 Carpinus fangiana HOM05D004138 ORTHO05D004898 2.5e-55 219.5 157 72.6
Os04g0617800 Oryza sativa ssp. japonica HOM05D004138 ORTHO05D004898 2.5e-55 219.5 245 55.5
Pp3c13_21930 Physcomitrium patens HOM05D004138 ORTHO05D004898 4.3e-55 218.8 167 68.9
Mapoly0095s0045 Marchantia polymorpha HOM05D004138 ORTHO05D004898 9.5e-55 217.6 167 70.1
AL7G43460 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.6e-54 216.9 164 71.3
Peaxi162Scf00092g01021 Petunia axillaris HOM05D004138 ORTHO05D004898 1.6e-54 216.9 153 75.8
QL06p002509 Quercus lobata HOM05D004138 ORTHO05D004898 1.6e-54 216.9 163 71.2
AUR62034751 Chenopodium quinoa HOM05D004138 ORTHO05D004898 2.1e-54 216.5 157 72.0
Lj6A608T71 Lonicera japonica HOM05D004138 ORTHO05D004898 2.1e-54 216.5 162 69.1
TAR365G0475 Trochodendron aralioides HOM05D004138 ORTHO05D004898 2.8e-54 216.1 159 71.7
EL10Ac1g01312 Beta vulgaris HOM05D004138 ORTHO05D004898 4.7e-54 215.3 160 70.0
Zm00001eb070570 Zea mays HOM05D004138 ORTHO05D004898 4.7e-54 215.3 165 70.3
A01p32660 Brassica napus HOM05D004138 ORTHO05D004898 1.1e-53 214.2 157 71.3
BraA01t03394Z Brassica rapa HOM05D004138 ORTHO05D004898 1.1e-53 214.2 157 71.3
Rhsim02G0024100 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.4e-53 213.8 157 70.7
AT4G14910 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 1.8e-53 213.4 164 67.7
C01p41840 Brassica napus HOM05D004138 ORTHO05D004898 2.3e-53 213.0 156 71.8
FAN07G1942 Fragaria x ananassa HOM05D004138 ORTHO05D004898 2.3e-53 213.0 159 71.7
GSVIVG01017973001 Vitis vinifera HOM05D004138 ORTHO05D004898 3.1e-53 212.6 167 67.1
Rhsim02G0024500 Rhododendron simsii HOM05D004138 ORTHO05D004898 5.2e-53 211.8 180 64.4
BolC1t04138H Brassica oleracea HOM05D004138 ORTHO05D004898 8.9e-53 211.1 156 71.2
Haze_03894 Corylus avellana HOM05D004138 ORTHO05D004898 8.9e-53 211.1 157 71.3
FAN17G0737 Fragaria x ananassa HOM05D004138 ORTHO05D004898 8.9e-53 211.1 159 71.1
Rhsim02G0024800 Rhododendron simsii HOM05D004138 ORTHO05D004898 8.9e-53 211.1 187 62.6
A05p26300 Brassica napus HOM05D004138 ORTHO05D004898 1.2e-52 210.7 157 70.1
FAN12G1931 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.5e-52 210.3 157 71.3
FAN22G1640 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.5e-52 210.3 157 71.3
Rhsim02G0024700 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.6e-52 209.5 157 70.1
BolC5t32835H Brassica oleracea HOM05D004138 ORTHO05D004898 3.4e-52 209.1 157 69.4
Rhsim02G0024200 Rhododendron simsii HOM05D004138 ORTHO05D004898 6.4e-51 204.9 180 63.9
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.4e-50 203.0 166 67.5
AL7G43530 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 4.1e-50 202.2 154 70.1
CBR_g48324 Chara braunii HOM05D004138 ORTHO05D004898 4.1e-50 202.2 165 65.5
ClCG06G006210 Citrullus lanatus HOM05D004138 ORTHO05D004898 5.4e-50 201.8 150 70.7
SEGI_10012 Sequoiadendron giganteum HOM05D004138 ORTHO05D004898 1.2e-49 200.7 156 66.0
Sed0010859 Sechium edule HOM05D004138 ORTHO05D004898 3.5e-49 199.1 149 69.1
Hund12131 Selenicereus undatus HOM05D004138 ORTHO05D004898 4.6e-49 198.7 159 67.9
MELO3C012647.2 Cucumis melo HOM05D004138 ORTHO05D004898 1.0e-48 197.6 180 61.1
SMO367G0933 Selaginella moellendorffii HOM05D004138 ORTHO05D004898 5.1e-48 195.3 165 61.8
Cpa.g.sc58.111 Carica papaya HOM05D004138 ORTHO05D004898 1.1e-45 187.6 157 65.6
Actinidia36959 Actinidia chinensis HOM05D004138 ORTHO05D004898 1.8e-45 186.8 161 66.5
Potri.008G152701 Populus trichocarpa HOM05D004138 ORTHO05D004898 3.1e-45 186.0 154 65.6
Cre02.g103850 Chlamydomonas reinhardtii HOM05D004138 ORTHO05D004898 8.9e-45 184.5 167 59.9
MBI06_g37250_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 1.3e-43 180.6 162 63.0
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 8.1e-38 161.4 211 48.8
SGA_v2.0_scaffold20G09126 Striga asiatica HOM05D004138 ORTHO05D004898 1.1e-37 161.0 121 71.1
Oeu031232.1 Olea europaea HOM05D004138 ORTHO05D004898 3.1e-37 159.5 122 69.7
SGA_v2.0_scaffold10G05080 Striga asiatica HOM05D004138 ORTHO05D004898 9.9e-36 154.5 121 66.9
Rhsim02G0025100 Rhododendron simsii HOM05D004138 ORTHO05D004898 3.8e-35 152.5 122 64.8
MBI06_g26001_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 4.2e-34 149.1 159 59.1
HPP92_026352 Vanilla planifolia HOM05D004138 ORTHO05D004898 4.6e-33 145.6 167 54.5
Sabra08G0116300 Salix brachista HOM05D004138 ORTHO05D004898 1.9e-31 140.2 273 38.8
Haze_27397 Corylus avellana HOM05D004138 ORTHO05D004898 2.4e-29 133.3 164 43.3
Dinv13992 Davidia involucrata HOM05D004138 ORTHO05D004898 9.9e-28 127.9 66 90.9
arahy.Tifrunner.gnm1.ann1.PP7NHW Arachis hypogaea HOM05D004138 ORTHO05D004898 2.2e-27 126.7 117 59.0
Ah.04g154580 Amaranthus hybridus HOM05D004138 ORTHO05D004898 1.4e-26 124.0 66 84.8
CDE10G0981 Ceratophyllum demersum HOM05D000366 ORTHO05D000437 2.4e-26 123.2 119 62.2
Sabra10G0055200 Salix brachista HOM05D004138 ORTHO05D004898 1.8e-24 117.1 98 63.3
ATR0661G018 Amborella trichopoda HOM05D004138 ORTHO05D004898 6.7e-24 115.2 66 80.3
AagrBONN_evm.TU.Sc2ySwM_228.3076 Anthoceros agrestis HOM05D004138 ORTHO05D004898 5.6e-23 112.1 65 76.9
PRCOL_00007017 Prasinoderma coloniale HOM05D004138 ORTHO05D004898 1.5e-20 104.0 150 40.0
MCO15G615 Micromonas commoda HOM05D004138 ORTHO05D004898 1.4e-18 97.4 156 35.9
SHI00436 Sapria himalayana HOM05D004138 ORTHO05D004898 1.6e-17 94.0 105 47.6
Cfa024592 Carpinus fangiana HOM05D004138 ORTHO05D004898 6.0e-17 92.0 167 37.1
Actinidia40147 Actinidia chinensis HOM05D004138 ORTHO05D004898 1.0e-16 91.3 54 81.5
CSS0002625 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 3.2e-10 69.7 36 83.3
Medtr8g045710 Medicago truncatula HOM05D004138 ORTHO05D004898 1.2e-09 67.8 64 62.5
AL5G12050 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 3.5e-09 66.2 41 73.2
arahy.Tifrunner.gnm1.ann1.RWV13Y Arachis hypogaea HOM05D000351 ORTHO05D018478 6.7e-08 62.0 30 96.7
Medtr1g071390 Medicago truncatula HOM05D004138 ORTHO05D004898 8.7e-08 61.6 30 93.3
arahy.Tifrunner.gnm1.ann1.UX9Z2U Arachis hypogaea HOM05D004138 ORTHO05D004898 1.1e-07 61.2 51 66.7
CSS0040239 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 4.3e-07 59.3 41 68.3
arahy.Tifrunner.gnm1.ann1.J4BC6Z Arachis hypogaea HOM05D004138 ORTHO05D004898 5.7e-07 58.9 51 64.7
CSS0029286 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 5.7e-07 58.9 34 76.5
Rhsim08G0128300 Rhododendron simsii HOM05D004138 ORTHO05D339665 2.8e-06 56.6 30 86.7


User provided reference genes

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