Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 8.1e-127 457.6 330 100.0
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 3.9e-73 279.3 296 55.1
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 1.1e-72 277.7 332 57.8
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 2.6e-72 276.6 298 55.0
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 4.4e-72 275.8 322 51.2
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 5.7e-72 275.4 340 69.7
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 7.4e-72 275.0 334 50.6
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 1.8e-70 270.4 299 53.5
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 5.3e-70 268.9 337 69.4
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 5.5e-67 258.8 337 62.0
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 1.0e-65 254.6 297 49.8
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 3.3e-64 249.6 155 81.3
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 2.4e-62 243.4 158 77.8
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 2.4e-62 243.4 159 78.0
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 5.3e-62 242.3 158 77.2
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 1.2e-61 241.1 296 75.0
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 7.2e-59 231.9 157 74.5
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 2.6e-56 223.4 156 72.4
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 9.8e-56 221.5 156 71.2
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 4.5e-53 212.6 154 66.9
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 1.0e-52 211.5 158 63.3
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 1.7e-52 210.7 160 65.6
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 1.7e-52 210.7 157 67.5
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 2.2e-52 210.3 159 63.5
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 3.8e-52 209.5 159 64.8
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 5.5e-51 205.7 157 67.5
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 5.5e-51 205.7 157 67.5
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 5.5e-51 205.7 157 66.2
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 7.2e-51 205.3 157 67.5
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 7.2e-51 205.3 158 65.2
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 9.4e-51 204.9 152 67.8
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.6e-50 204.1 157 66.9
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.6e-50 204.1 157 66.9
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 4.7e-50 202.6 159 62.3
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 6.1e-50 202.2 153 60.8
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 8.0e-50 201.8 153 61.4
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 1.4e-49 201.1 157 63.1
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 3.0e-49 199.9 156 60.3
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 5.2e-49 199.1 159 61.6
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 5.2e-49 199.1 159 62.3
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 5.2e-49 199.1 159 62.3
MD05G1028600 Malus domestica HOM05D006505 ORTHO05D008086 5.2e-49 199.1 159 62.3
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 5.2e-49 199.1 154 63.6
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 5.2e-49 199.1 154 63.6
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 6.8e-49 198.7 150 66.7
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 8.8e-49 198.4 153 59.5
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 1.2e-48 198.0 154 64.9
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 1.2e-48 198.0 156 60.3
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 1.5e-48 197.6 162 60.5
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 2.0e-48 197.2 160 62.5
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 2.6e-48 196.8 156 59.6
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 3.4e-48 196.4 156 65.4
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 3.4e-48 196.4 156 65.4
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 4.4e-48 196.1 159 61.0
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 4.4e-48 196.1 174 58.0
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 5.7e-48 195.7 156 59.0
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 5.7e-48 195.7 156 59.0
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 5.7e-48 195.7 156 59.0
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 5.7e-48 195.7 146 65.8
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 7.5e-48 195.3 158 65.2
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 9.8e-48 194.9 156 64.7
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 9.8e-48 194.9 156 64.7
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 9.8e-48 194.9 156 64.7
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 1.3e-47 194.5 156 58.3
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 1.3e-47 194.5 160 61.9
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.7e-47 194.1 156 61.5
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 1.7e-47 194.1 158 62.7
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 2.2e-47 193.7 156 59.0
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 2.2e-47 193.7 155 64.5
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 2.8e-47 193.4 156 64.7
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 8.3e-47 191.8 166 58.4
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 3.1e-46 189.9 156 62.8
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 3.1e-46 189.9 146 66.4
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 7.0e-46 188.7 158 62.7
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 9.1e-46 188.3 156 62.2
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 1.2e-45 188.0 164 58.5
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 1.6e-45 187.6 167 57.5
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 4.5e-45 186.0 159 57.2
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 4.5e-45 186.0 156 64.1
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 5.9e-45 185.7 120 70.8
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 2.3e-44 183.7 155 61.3
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 3.8e-44 183.0 158 60.8
AL1G45900 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 1.9e-43 180.6 142 58.5
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 1.2e-42 177.9 126 67.5
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 4.7e-42 176.0 126 66.7
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 1.5e-40 171.0 152 56.6
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 9.8e-40 168.3 156 58.3
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 4.9e-39 166.0 156 57.7
Potri.007G117700 Populus trichocarpa HOM05D006505 ORTHO05D008086 4.9e-39 166.0 159 58.5
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 6.3e-39 165.6 156 57.1
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 2.4e-38 163.7 158 54.4
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 2.4e-38 163.7 152 57.2
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 5.9e-37 159.1 158 51.3
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 1.0e-36 158.3 161 50.3
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 1.0e-36 158.3 161 50.3
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 1.3e-36 157.9 176 48.3
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 3.3e-35 153.3 145 54.5
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 3.3e-35 153.3 181 45.3
Peaxi162Scf00193g00002 Petunia axillaris HOM05D006505 ORTHO05D008086 5.6e-35 152.5 132 61.4
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 9.5e-35 151.8 126 59.5
Cpa.g.sc48.17 Carica papaya HOM05D006505 ORTHO05D008086 4.7e-34 149.4 139 57.6
Actinidia01261 Actinidia chinensis HOM05D006505 ORTHO05D008086 2.6e-32 143.7 132 59.8
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 2.6e-32 143.7 155 49.7
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 4.4e-32 142.9 141 55.3
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 5.8e-32 142.5 123 58.5
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 1.7e-31 141.0 102 59.8
BolC5t32703H Brassica oleracea HOM05D006505 ORTHO05D008086 8.3e-31 138.7 104 59.6
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 1.1e-30 138.3 128 53.9
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 3.5e-29 133.3 110 60.9
SGA_v2.0_scaffold96G29075 Striga asiatica HOM05D006505 ORTHO05D008086 7.8e-29 132.1 139 52.5
CDE02G2054 Ceratophyllum demersum HOM05D006505 ORTHO05D008086 8.1e-26 122.1 93 65.6
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 2.6e-24 117.1 80 61.2
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 1.7e-23 114.4 94 60.6
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 4.1e-22 109.8 95 55.8
Rhsim01G0291600 Rhododendron simsii HOM05D006505 ORTHO05D008086 7.8e-21 105.5 97 61.9
Dinv41818 Davidia involucrata HOM05D001955 ORTHO05D001917 3.3e-19 100.1 144 46.5
TAR636G3390 Trochodendron aralioides HOM05D006505 ORTHO05D008086 6.8e-17 92.4 102 49.0
CAN.G601.5 Capsicum annuum HOM05D006505 ORTHO05D008086 4.6e-13 79.7 86 55.8
MBI05_g23315_MAGBIO Magnolia biondii HOM05D006505 ORTHO05D008086 4.6e-13 79.7 69 50.7
Actinidia32777 Actinidia chinensis HOM05D006505 ORTHO05D008086 1.3e-12 78.2 65 64.6
Sed0026211 Sechium edule HOM05D006505 ORTHO05D008086 3.9e-12 76.6 106 46.2
AagrBONN_evm.TU.Sc2ySwM_340.30 Anthoceros agrestis HOM05D000964 ORTHO05D003870 1.8e-09 67.8 119 36.1
A05p25490 Brassica napus HOM05D006505 ORTHO05D008086 4.0e-09 66.6 46 56.5
Cre06.g288400 Chlamydomonas reinhardtii HOM05D000964 ORTHO05D003870 1.3e-07 61.6 120 39.2
PSO339G5687 Papaver somniferum HOM05D006505 ORTHO05D008086 2.2e-07 60.8 63 46.0
PSO384G0602 Papaver somniferum HOM05D006505 ORTHO05D008086 2.2e-07 60.8 63 46.0
PSO648G0043 Papaver somniferum HOM05D006505 ORTHO05D008086 2.9e-07 60.5 74 43.2
PSO339G1081 Papaver somniferum HOM05D006505 ORTHO05D008086 3.8e-07 60.1 63 46.0
Cfa018462 Carpinus fangiana HOM05D000964 ORTHO05D003870 1.9e-06 57.8 136 32.4
PSO832G3634 Papaver somniferum HOM05D000964 ORTHO05D003870 4.2e-06 56.6 120 35.0


User provided reference genes

Program Settings