Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0010110 Lotus japonicus HOM05D004966 ORTHO05D006199 0.0e+00 1547.7 1040 100.0
Ca_24712_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 0.0e+00 1336.6 1044 88.2
Ca_24727_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 0.0e+00 1336.6 1044 88.2
Glyma.01G191100 Glycine max HOM05D004966 ORTHO05D006199 0.0e+00 1307.4 1048 88.5
TPR.G20946 Trifolium pratense HOM05D004966 ORTHO05D006199 0.0e+00 1283.1 1046 85.9
Medtr5g016190 Medicago truncatula HOM05D004966 ORTHO05D006199 0.0e+00 1267.7 1043 85.1
Glyma.17G164600 Glycine max HOM05D004966 ORTHO05D006199 0.0e+00 1217.2 1047 82.5
arahy.Tifrunner.gnm1.ann1.EHFU3U Arachis hypogaea HOM05D004966 ORTHO05D006199 0.0e+00 1202.6 1043 83.0
arahy.Tifrunner.gnm1.ann1.E3XCDG Arachis hypogaea HOM05D004966 ORTHO05D006199 0.0e+00 1196.4 1043 82.6
Glyma.05G102400 Glycine max HOM05D004966 ORTHO05D006199 0.0e+00 1188.7 1043 81.1
VMungo0251G2147 Vigna mungo HOM05D004966 ORTHO05D006199 0.0e+00 1187.6 1050 81.1
Phvul.003G238000 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 0.0e+00 1185.6 1045 81.2
arahy.Tifrunner.gnm1.ann1.138YHT Arachis hypogaea HOM05D004966 ORTHO05D006199 0.0e+00 1182.2 1043 80.7
Lj4g0015306 Lotus japonicus HOM05D004966 ORTHO05D006199 0.0e+00 1143.3 1044 79.3
Lalb_Chr05g0226061 Lupinus albus HOM05D004966 ORTHO05D006199 0.0e+00 1126.3 1046 79.2
Psat2g169880 Pisum sativum HOM05D004966 ORTHO05D006199 0.0e+00 1101.3 909 87.5
arahy.Tifrunner.gnm1.ann1.E99DR7 Arachis hypogaea HOM05D004966 ORTHO05D006199 0.0e+00 1096.6 1043 77.7
Prupe.6G225100 Prunus persica HOM05D004966 ORTHO05D006199 0.0e+00 1084.3 1050 76.7
MD02G1181200 Malus domestica HOM05D004966 ORTHO05D006199 6.8e-305 1050.8 1050 75.2
Actinidia32817 Actinidia chinensis HOM05D004966 ORTHO05D006199 2.0e-304 1049.3 1061 74.5
Atru.chr3.210 Acer truncatum HOM05D004966 ORTHO05D006199 6.6e-300 1034.2 1109 72.3
PGR004G2163 Punica granatum HOM05D004966 ORTHO05D006199 1.5e-299 1033.1 1047 75.2
Duzib147G1627 Durio zibethinus HOM05D004966 ORTHO05D006199 2.3e-297 1025.8 1114 70.5
RcHm_v2.0_Chr2g0107271 Rosa chinensis HOM05D004966 ORTHO05D006199 1.3e-295 1020.0 1087 72.3
Thecc.01G067600 Theobroma cacao HOM05D004966 ORTHO05D006199 3.0e-292 1008.8 1105 70.9
CANSAT01G2710 Cannabis sativa HOM05D004966 ORTHO05D006199 1.1e-291 1006.9 1052 73.5
Manes.12G112800 Manihot esculenta HOM05D004966 ORTHO05D006199 1.1e-291 1006.9 1103 70.5
Potri.007G052200 Populus trichocarpa HOM05D004966 ORTHO05D006199 1.1e-291 1006.9 1109 70.6
Rhsim08G0096300 Rhododendron simsii HOM05D004966 ORTHO05D006199 2.5e-291 1005.7 1090 72.3
Cc07_g06700 Coffea canephora HOM05D004966 ORTHO05D006199 5.6e-291 1004.6 1075 72.6
CsaV3_6G043790 Cucumis sativus L. HOM05D004966 ORTHO05D006199 2.1e-290 1002.7 1051 72.5
Ciclev10024760m.g Citrus clementina HOM05D004966 ORTHO05D006199 6.2e-290 1001.1 1110 70.4
Eucgr.I00728 Eucalyptus grandis HOM05D004966 ORTHO05D006199 2.4e-289 999.2 1051 72.7
Gorai.007G220700 Gossypium raimondii HOM05D004966 ORTHO05D006199 2.4e-289 999.2 1113 70.3
Gohir.A11G217900 Gossypium hirsutum HOM05D004966 ORTHO05D006199 2.0e-288 996.1 1114 70.0
Sed0025120 Sechium edule HOM05D004966 ORTHO05D006199 3.4e-288 995.3 1049 72.2
Gohir.D11G205500 Gossypium hirsutum HOM05D004966 ORTHO05D006199 2.9e-287 992.3 1114 69.8
TWI09G0336 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 3.8e-287 991.9 1116 69.7
CSS0024631 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.1e-286 990.3 1079 71.5
Nitab4.5_0000868g0040 Nicotiana tabacum HOM05D004966 ORTHO05D006199 3.2e-286 988.8 1063 71.8
Sabra07G0045800 Salix brachista HOM05D004966 ORTHO05D006199 9.2e-286 987.3 1110 69.8
Hund16378 Selenicereus undatus HOM05D004966 ORTHO05D006199 9.2e-286 987.3 1050 73.1
COL.COLO4_11522 Corchorus olitorius HOM05D004966 ORTHO05D006199 3.5e-285 985.3 1130 69.6
Hma1.2p1_0017F.1_g012040 Hydrangea macrophylla HOM05D004966 ORTHO05D006199 3.9e-284 981.9 1052 72.8
Cfa004090 Carpinus fangiana HOM05D004966 ORTHO05D006199 2.1e-282 976.1 1049 72.6
Sopen02g037320 Solanum pennellii HOM05D004966 ORTHO05D006199 2.1e-282 976.1 1057 71.3
Oeu013276.1 Olea europaea HOM05D004966 ORTHO05D006199 6.9e-281 971.1 1053 61.3
TWI73G0630 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 1.4e-278 963.4 1110 68.2
Solyc02g092780.3 Solanum lycopersicum HOM05D004966 ORTHO05D006199 1.9e-278 963.0 1063 70.6
THA.LOC104807611 Tarenaya hassleriana HOM05D004966 ORTHO05D006199 1.1e-273 947.2 1085 68.4
Migut.H00376 Erythranthe guttata HOM05D004966 ORTHO05D006199 6.9e-273 944.5 1048 70.7
FvH4_1g17100 Fragaria vesca HOM05D004966 ORTHO05D006199 6.9e-273 944.5 1085 69.5
FAN19G1580 Fragaria x ananassa HOM05D004966 ORTHO05D006199 1.5e-272 943.3 1085 69.4
Duzib187G0681 Durio zibethinus HOM05D004966 ORTHO05D006199 8.4e-271 937.6 1113 68.1
EL10Ac6g15665 Beta vulgaris HOM05D004966 ORTHO05D006199 2.4e-270 936.0 1052 70.4
ECA238G2979 Erigeron canadensis HOM05D004966 ORTHO05D006199 4.2e-270 935.3 1052 70.7
FAN26G1585 Fragaria x ananassa HOM05D004966 ORTHO05D006199 5.1e-268 928.3 1075 69.4
Haze_15324 Corylus avellana HOM05D004966 ORTHO05D006199 2.5e-267 926.0 1049 71.0
FAN28G1348 Fragaria x ananassa HOM05D004966 ORTHO05D006199 5.6e-267 924.9 1087 69.0
Sc16g0004960 Simmondsia chinensis HOM05D004966 ORTHO05D006199 2.8e-266 922.5 1049 70.1
TAR625G0217 Trochodendron aralioides HOM05D004966 ORTHO05D006199 5.3e-265 918.3 1040 70.7
Aqoxy6G02774 Aquilegia oxysepala HOM05D004966 ORTHO05D006199 1.5e-264 916.8 1050 69.8
GSVIVG01000163001 Vitis vinifera HOM05D004966 ORTHO05D006199 1.5e-264 916.8 1041 71.2
MELO3C007603.2 Cucumis melo HOM05D004966 ORTHO05D006199 7.6e-264 914.4 1061 63.8
AL7G13330 Arabidopsis lyrata HOM05D004966 ORTHO05D006199 2.2e-263 912.9 1064 67.5
DCAR_010836 Daucus carota HOM05D004966 ORTHO05D006199 2.9e-263 912.5 1081 68.8
MSTRG.23699 Avicennia marina HOM05D004966 ORTHO05D006199 8.4e-263 911.0 1046 69.5
Nn5g30492 Nelumbo nucifera HOM05D004966 ORTHO05D006199 8.4e-263 911.0 1040 70.2
Lsat_1_v5_gn_2_83581 Lactuca sativa HOM05D004966 ORTHO05D006199 1.2e-261 907.1 1040 70.2
HanXRQChr14g0441841 Helianthus annuus HOM05D004966 ORTHO05D006199 6.7e-260 901.4 1045 69.8
Carub.0007s0282 Capsella rubella HOM05D004966 ORTHO05D006199 7.4e-259 897.9 1081 66.0
C01p01650 Brassica napus HOM05D004966 ORTHO05D006199 2.4e-257 892.9 1073 66.3
BolC1t00159H Brassica oleracea HOM05D004966 ORTHO05D006199 2.6e-256 889.4 1067 66.4
vmacro17983 Vaccinium macrocarpon HOM05D004966 ORTHO05D006199 1.7e-255 886.7 1211 45.2
AT4G37460 Arabidopsis thaliana HOM05D004966 ORTHO05D006199 2.9e-255 885.9 1068 67.6
BcaNung05081 Brassica carinata HOM05D004966 ORTHO05D006199 3.2e-254 882.5 1063 65.9
A01p01480 Brassica napus HOM05D004966 ORTHO05D006199 7.9e-253 877.9 1047 66.8
Phvul.002G013932 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 3.0e-252 875.9 494 86.0
Aa31LG6G14330 Aethionema arabicum HOM05D004966 ORTHO05D006199 3.9e-252 875.5 1090 64.7
BraA01t00142Z Brassica rapa HOM05D004966 ORTHO05D006199 5.1e-252 875.2 1054 62.9
AUR62038275 Chenopodium quinoa HOM05D004966 ORTHO05D006199 1.5e-251 873.6 1049 67.3
SGA_v2.0_scaffold15G07400 Striga asiatica HOM05D004966 ORTHO05D006199 1.3e-250 870.5 1139 45.4
Lj4C159G2 Lonicera japonica HOM05D004966 ORTHO05D006199 8.2e-250 867.8 1056 67.3
AUR62003963 Chenopodium quinoa HOM05D004966 ORTHO05D006199 1.1e-246 857.4 1043 67.9
Nitab4.5_0001439g0170 Nicotiana tabacum HOM05D004966 ORTHO05D006199 1.9e-246 856.7 1063 66.9
PSO541G4192 Papaver somniferum HOM05D004966 ORTHO05D006199 8.8e-244 847.8 1045 66.0
PSO675G4881 Papaver somniferum HOM05D004966 ORTHO05D006199 1.1e-243 847.4 1059 65.3
ClCG01G017250 Citrullus lanatus HOM05D004966 ORTHO05D006199 9.7e-243 844.3 1051 67.6
BcaNung03662 Brassica carinata HOM05D004966 ORTHO05D006199 1.4e-238 830.5 1033 66.0
CARHR245860 Cardamine hirsuta HOM05D004966 ORTHO05D006199 1.9e-238 830.1 1060 63.8
CiPaw.01G008200 Carya illinoinensis HOM05D004966 ORTHO05D006199 2.0e-235 820.1 486 80.0
MD15G1292200 Malus domestica HOM05D004966 ORTHO05D006199 9.4e-230 801.2 495 75.4
Dinv30059 Davidia involucrata HOM05D004966 ORTHO05D006199 4.5e-224 782.3 919 72.3
CAN.G1075.3 Capsicum annuum HOM05D004966 ORTHO05D006199 2.9e-223 779.6 495 74.1
Peaxi162Scf00264g00044 Petunia axillaris HOM05D004966 ORTHO05D006199 7.7e-216 755.0 982 61.4
Os07g0113700 Oryza sativa ssp. japonica HOM05D004966 ORTHO05D006199 2.7e-213 746.5 1050 59.1
Zm00001eb118220 Zea mays HOM05D004966 ORTHO05D006199 3.4e-211 739.6 1048 54.5
CSS0020625 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.7e-210 737.3 829 63.1
MBI16_g06665_MAGBIO Magnolia biondii HOM05D004966 ORTHO05D006199 3.4e-203 713.0 490 69.2
SEGI_23316 Sequoiadendron giganteum HOM05D004966 ORTHO05D006199 9.5e-198 694.9 1034 60.6
Lalb_Chr16g0389071 Lupinus albus HOM05D004966 ORTHO05D006199 9.2e-185 651.7 780 77.3
Thhalv10024286m.g Eutrema salsugineum HOM05D004966 ORTHO05D006199 7.5e-179 632.1 931 64.7
unitig_62.g23418 Utricularia gibba HOM05D004966 ORTHO05D006199 1.4e-177 627.9 979 57.1
ATR0661G243 Amborella trichopoda HOM05D004966 ORTHO05D006199 6.0e-176 622.5 483 62.1
TAR381G1622 Trochodendron aralioides HOM05D004966 ORTHO05D006199 9.0e-156 555.4 836 67.6
Pp3c2_36070 Physcomitrium patens HOM05D004966 ORTHO05D006199 9.0e-148 528.9 1032 45.8
Mapoly0153s0004 Marchantia polymorpha HOM05D004966 ORTHO05D006199 4.5e-139 500.0 1031 46.9
Ah.03g146320 Amaranthus hybridus HOM05D004966 ORTHO05D006199 4.6e-136 490.0 440 57.3
Lalb_Chr16g0389061 Lupinus albus HOM05D004966 ORTHO05D006199 7.9e-128 462.6 252 86.5
CBR_g36368 Chara braunii HOM05D004966 ORTHO05D006199 4.0e-103 380.6 539 40.1
Dinv26891 Davidia involucrata HOM05D004966 ORTHO05D006199 1.3e-93 349.0 205 77.1
Sp7g35120 Schrenkiella parvula HOM05D004966 ORTHO05D006199 3.7e-93 347.4 702 58.1
BolC7t46655H Brassica oleracea HOM05D004966 ORTHO05D006199 6.3e-93 346.7 898 35.2
MD15G1292300 Malus domestica HOM05D004966 ORTHO05D006199 4.1e-92 344.0 339 58.4
Cpa.g.sc1082.1 Carica papaya HOM05D004966 ORTHO05D006199 2.5e-89 334.7 201 78.1
CAN.G1075.4 Capsicum annuum HOM05D004966 ORTHO05D006199 4.1e-76 290.8 345 51.0
Phvul.002G013866 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 8.6e-74 283.1 194 78.9
Cre01.g021450 Chlamydomonas reinhardtii HOM05D004966 ORTHO05D006199 1.4e-71 275.8 455 36.7
FAN23G2362 Fragaria x ananassa HOM05D004966 ORTHO05D006199 1.0e-66 259.6 350 49.1
C07p62400 Brassica napus HOM05D004966 ORTHO05D006199 5.1e-66 257.3 506 35.8
BcaNung02943 Brassica carinata HOM05D004966 ORTHO05D006199 7.3e-65 253.4 176 70.5
Duzib264G0118 Durio zibethinus HOM05D004966 ORTHO05D006199 1.6e-64 252.3 271 51.7
CiPaw.01G008100 Carya illinoinensis HOM05D004966 ORTHO05D006199 9.2e-60 236.5 300 51.0
Glyma.11G051133 Glycine max HOM05D004966 ORTHO05D006199 3.1e-47 194.9 186 58.1
BcaNung02944 Brassica carinata HOM05D004966 ORTHO05D006199 1.5e-46 192.6 133 65.4
Cpa.g.sc6.60 Carica papaya HOM05D004966 ORTHO05D006199 4.9e-45 187.6 99 84.8
Cpa.g.sc6.59 Carica papaya HOM05D004966 ORTHO05D006199 3.0e-42 178.3 229 50.2
Glyma.11G051067 Glycine max HOM05D004966 ORTHO05D006199 3.9e-42 177.9 123 76.4
A03p65150 Brassica napus HOM05D004966 ORTHO05D006199 4.8e-40 171.0 129 64.3
BraA03t15573Z Brassica rapa HOM05D004966 ORTHO05D006199 8.1e-40 170.2 129 64.3
CSS0040429 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.7e-37 162.5 92 85.9
Ah.03g146310 Amaranthus hybridus HOM05D004966 ORTHO05D006199 7.4e-33 147.1 89 79.8
BcaNung02945 Brassica carinata HOM05D004966 ORTHO05D006199 9.0e-31 140.2 92 70.7
CSS0022043 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.2e-30 139.8 114 64.0
CSS0006661 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 2.0e-30 139.0 74 79.7
RcHm_v2.0_Chr1g0315291 Rosa chinensis HOM05D004966 ORTHO05D006199 2.5e-25 122.1 75 76.0
BcaNung02055 Brassica carinata HOM05D004966 ORTHO05D006199 9.6e-25 120.2 105 61.9
Oeu011609.3 Olea europaea HOM05D004966 ORTHO05D006199 3.8e-21 108.2 126 46.8
ATR0030G036 Amborella trichopoda HOM05D004966 ORTHO05D006199 2.9e-13 82.0 123 38.2
CSS0042095 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 4.6e-11 74.7 45 77.8
CBR_g36362 Chara braunii HOM05D004966 ORTHO05D006199 7.9e-11 73.9 221 30.8
Lsat_1_v5_gn_8_118440 Lactuca sativa HOM05D004966 ORTHO05D231273 9.7e-09 67.0 49 55.1
CSS0024681 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 3.7e-08 65.1 40 77.5
arahy.Tifrunner.gnm1.ann1.48QRQ3 Arachis hypogaea HOM05D002189 ORTHO05D002233 1.4e-07 63.2 36 83.3


User provided reference genes

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