Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 0.0e+00 1190.3 868 100.0
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 1.1e-98 365.5 822 43.7
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 1.4e-98 365.2 823 43.6
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 9.6e-95 352.4 955 48.5
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 8.2e-78 296.2 858 44.4
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 3.5e-68 264.2 981 41.2
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 5.0e-67 260.4 889 29.9
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.5e-63 248.8 280 55.0
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 8.3e-54 216.5 1189 35.3
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 2.8e-46 191.4 285 46.0
TPR.G10748 Trifolium pratense HOM05D004189 ORTHO05D004092 2.0e-44 185.3 213 59.6
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 3.5e-44 184.5 280 47.9
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 5.0e-43 180.6 921 26.7
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.5e-42 179.1 904 27.8
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 4.7e-41 174.1 901 27.7
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 1.0e-40 172.9 288 44.1
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 5.4e-37 160.6 911 27.0
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 7.0e-37 160.2 288 44.4
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 4.5e-36 157.5 279 41.6
Medtr1g100623 Medicago truncatula HOM05D004189 ORTHO05D004092 1.7e-35 155.6 288 40.3
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 2.5e-34 151.8 179 55.3
Glyma.16G192732 Glycine max HOM05D004189 ORTHO05D004092 4.3e-34 151.0 179 55.3
Glyma.16G192200 Glycine max HOM05D004189 ORTHO05D004092 1.2e-33 149.4 167 56.3
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 2.8e-33 148.3 167 56.3
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 1.0e-32 146.4 938 25.1
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 8.9e-32 143.3 280 38.9
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 2.0e-31 142.1 874 26.2
Psat0s2227g0040 Pisum sativum HOM05D004189 ORTHO05D004092 2.6e-31 141.7 181 47.5
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 7.5e-31 140.2 904 28.1
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 3.2e-29 134.8 917 26.0
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 1.2e-28 132.9 287 36.2
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 1.2e-28 132.9 928 26.1
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 2.0e-28 132.1 380 33.7
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 2.0e-28 132.1 777 37.7
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 6.6e-27 127.1 938 25.3
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 1.9e-26 125.6 230 40.9
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.8e-24 119.0 230 41.3
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 6.8e-24 117.1 164 51.2
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 7.5e-23 113.6 283 33.6
Lalb_Chr21g0305031 Lupinus albus HOM05D004189 ORTHO05D004092 3.7e-22 111.3 206 42.2
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 3.7e-22 111.3 295 35.6
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 6.4e-22 110.5 997 24.5
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 8.3e-22 110.2 993 24.0
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 1.4e-21 109.4 293 36.9
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 4.1e-21 107.8 866 25.1
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 1.2e-20 106.3 246 37.0
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 1.2e-20 106.3 242 36.4
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 3.5e-20 104.8 875 24.0
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.6e-20 104.4 906 23.7
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 4.6e-20 104.4 260 35.4
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 5.1e-19 100.9 302 32.8
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 1.1e-18 99.8 106 51.9
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 1.1e-18 99.8 972 22.4
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 2.5e-18 98.6 289 33.9
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 3.3e-18 98.2 241 34.9
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 3.3e-18 98.2 387 32.0
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 9.5e-18 96.7 246 34.1
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 2.1e-17 95.5 248 35.5
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 3.6e-17 94.7 258 34.9
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 4.7e-17 94.4 240 37.1
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 4.7e-17 94.4 273 33.0
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 1.1e-16 93.2 267 34.8
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 3.1e-16 91.7 233 36.9
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.6e-15 88.6 306 34.0
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 3.4e-15 88.2 901 22.8
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 7.5e-15 87.0 946 22.5
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 9.9e-15 86.7 232 35.3
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 1.7e-14 85.9 265 31.7
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 2.2e-14 85.5 410 31.7
Haze_13708 Corylus avellana HOM05D004189 ORTHO05D004092 2.2e-14 85.5 109 54.1
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 2.2e-14 85.5 264 36.4
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.9e-14 85.1 272 32.0
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 2.9e-14 85.1 339 31.0
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 8.3e-14 83.6 290 30.3
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 8.3e-14 83.6 695 22.0
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 8.3e-14 83.6 269 31.6
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 8.3e-14 83.6 264 31.8
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 1.1e-13 83.2 200 34.5
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 1.9e-13 82.4 295 30.8
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 2.4e-13 82.0 190 37.4
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 2.4e-13 82.0 272 31.6
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 4.1e-13 81.3 265 31.3
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 4.1e-13 81.3 290 31.4
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 5.4e-13 80.9 308 29.9
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 9.2e-13 80.1 295 30.8
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 9.2e-13 80.1 269 31.2
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.2e-12 79.7 267 30.7
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 1.6e-12 79.3 235 36.2
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 2.1e-12 79.0 316 32.3
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.7e-12 78.6 261 31.4
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 3.5e-12 78.2 315 29.5
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 4.6e-12 77.8 253 34.0
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 4.6e-12 77.8 92 48.9
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 6.0e-12 77.4 265 29.4
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 1.0e-11 76.6 311 30.2
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 1.0e-11 76.6 312 30.4
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 1.3e-11 76.3 332 27.7
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.7e-11 75.9 267 30.0
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 2.3e-11 75.5 294 29.9
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 3.0e-11 75.1 267 31.5
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 3.9e-11 74.7 173 33.5
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 5.1e-11 74.3 268 30.6
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 6.6e-11 73.9 173 33.5
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 6.6e-11 73.9 259 32.0
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 1.1e-10 73.2 294 29.6
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 1.1e-10 73.2 294 29.6
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 1.1e-10 73.2 257 31.1
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 1.5e-10 72.8 370 28.1
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 1.5e-10 72.8 936 22.4
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 1.9e-10 72.4 294 28.9
SalBow4G1418 Salvia bowleyana HOM05D026728 ORTHO05D004092 2.5e-10 72.0 277 31.0
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 4.3e-10 71.2 209 35.4
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 4.3e-10 71.2 250 33.6
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 4.3e-10 71.2 952 23.9
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 4.3e-10 71.2 154 37.7
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 7.3e-10 70.5 214 32.7
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.2e-09 69.7 225 33.3
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 1.6e-09 69.3 259 29.7
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 2.1e-09 68.9 311 26.4
Glyma.16G193050 Glycine max HOM05D004189 ORTHO05D004092 2.1e-09 68.9 65 63.1
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 3.6e-09 68.2 171 35.1
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 3.6e-09 68.2 249 30.9
Psat6g199400 Pisum sativum HOM05D004189 ORTHO05D004092 4.7e-09 67.8 196 33.7
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 6.2e-09 67.4 262 29.0
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 8.1e-09 67.0 222 32.0
A08p21090 Brassica napus HOM05D002154 ORTHO05D002362 1.1e-08 66.6 93 43.0
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.1e-08 66.6 152 34.2
CsaV3_3G049950 Cucumis sativus L. HOM05D004189 ORTHO05D004092 2.4e-08 65.5 229 35.4
BcaC07g38200 Brassica carinata HOM05D004189 ORTHO05D004092 3.1e-08 65.1 93 43.0
BolC8t48624H Brassica oleracea HOM05D004189 ORTHO05D004092 3.1e-08 65.1 93 43.0
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 4.0e-08 64.7 300 27.3
SGA_v2.0_scaffold60G21043 Striga asiatica HOM05D004189 ORTHO05D004092 4.0e-08 64.7 127 34.6
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 5.2e-08 64.3 305 28.2
ClCG09G012920 Citrullus lanatus HOM05D004189 ORTHO05D004092 5.2e-08 64.3 227 30.8
C08p09550 Brassica napus HOM05D002154 ORTHO05D002362 6.8e-08 63.9 93 41.9
CARHR259130 Cardamine hirsuta HOM05D004189 ORTHO05D004092 6.8e-08 63.9 81 49.4
SalBow4G1950 Salvia bowleyana HOM05D026728 ORTHO05D004092 6.8e-08 63.9 295 29.5
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 8.9e-08 63.5 303 28.1
BraA08t34059Z Brassica rapa HOM05D002154 ORTHO05D002362 1.2e-07 63.2 93 41.9
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 1.2e-07 63.2 164 31.7
Nitab4.5_0002721g0060 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.2e-07 63.2 188 30.3
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 2.0e-07 62.4 301 28.9
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 3.4e-07 61.6 301 27.9
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 5.8e-07 60.8 256 30.9
BcaB03g12476 Brassica carinata HOM05D002154 ORTHO05D002362 5.8e-07 60.8 75 46.7
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 5.8e-07 60.8 286 28.7
Zm00001eb220700 Zea mays HOM05D036983 ORTHO05D037006 7.6e-07 60.5 135 35.6
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 9.9e-07 60.1 148 36.5
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 9.9e-07 60.1 241 29.0
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 2.2e-06 58.9 267 28.1
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 2.9e-06 58.5 169 34.9


User provided reference genes

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