Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 1.9e-184 649.0 324 100.0
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 7.2e-136 487.6 286 84.3
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 2.8e-124 449.1 205 98.5
Ca_08225_v3 Cicer arietinum L. HOM05D007742 ORTHO05D004072 6.6e-57 225.3 278 42.8
TPR.G26439 Trifolium pratense HOM05D007742 ORTHO05D004072 5.6e-56 222.2 297 43.1
Phvul.001G079300 Phaseolus vulgaris HOM05D007742 ORTHO05D004072 3.6e-55 219.5 274 44.5
Psat3g092040 Pisum sativum HOM05D007742 ORTHO05D004072 2.6e-53 213.4 304 41.4
VMungo0464G0864 Vigna mungo HOM05D007742 ORTHO05D004072 5.8e-53 212.2 291 41.9
VMungo1383G1777 Vigna mungo HOM05D007742 ORTHO05D004072 5.8e-53 212.2 271 45.8
Lalb_Chr22g0359781 Lupinus albus HOM05D007742 ORTHO05D004072 7.3e-48 195.3 276 40.6
Glyma.19G105400 Glycine max HOM05D007742 ORTHO05D004072 1.8e-46 190.7 276 41.7
arahy.Tifrunner.gnm1.ann1.L07F2C Arachis hypogaea HOM05D007742 ORTHO05D004072 1.0e-41 174.9 170 48.2
Glyma.19G105500 Glycine max HOM05D007742 ORTHO05D004072 3.3e-40 169.9 195 45.6
arahy.Tifrunner.gnm1.ann1.H02ZFL Arachis hypogaea HOM05D007742 ORTHO05D004072 5.6e-40 169.1 170 47.1
arahy.Tifrunner.gnm1.ann1.T3P4RE Arachis hypogaea HOM05D007742 ORTHO05D004072 3.1e-38 163.3 196 44.9
arahy.Tifrunner.gnm1.ann1.U642C8 Arachis hypogaea HOM05D007742 ORTHO05D004072 1.0e-36 158.3 196 42.9
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 7.4e-32 142.1 150 44.7
Medtr4g082160 Medicago truncatula HOM05D007742 ORTHO05D004072 7.4e-32 142.1 123 55.3
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 1.1e-27 128.3 173 40.5
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 2.7e-26 123.6 187 35.3
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 3.5e-26 123.2 159 37.1
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 7.9e-26 122.1 154 39.6
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 1.0e-25 121.7 151 39.7
Ciclev10014788m.g Citrus clementina HOM05D007742 ORTHO05D004072 1.3e-25 121.3 152 42.1
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 1.3e-25 121.3 158 41.1
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 1.8e-25 120.9 145 42.1
BcaB01g05328 Brassica carinata HOM05D009880 ORTHO05D004072 1.9e-24 117.5 151 38.4
C03p07260 Brassica napus HOM05D009880 ORTHO05D004072 1.9e-24 117.5 151 38.4
AL6G24570 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 4.3e-24 116.3 149 40.3
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 4.3e-24 116.3 162 40.1
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 7.4e-24 115.5 149 41.6
AT5G13920 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 1.3e-23 114.8 149 40.3
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 1.3e-23 114.8 164 36.0
A03p06280 Brassica napus HOM05D009880 ORTHO05D004072 1.6e-23 114.4 151 37.7
BraA03t09959Z Brassica rapa HOM05D009880 ORTHO05D004072 1.6e-23 114.4 151 37.7
Sp6g30080 Schrenkiella parvula HOM05D009880 ORTHO05D004072 2.2e-23 114.0 149 38.3
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 2.8e-23 113.6 172 33.1
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 3.7e-23 113.2 148 36.5
PGR142G3827 Punica granatum HOM05D007742 ORTHO05D004072 4.8e-23 112.8 160 39.4
CARHR199510 Cardamine hirsuta HOM05D009880 ORTHO05D004072 6.3e-23 112.5 149 39.6
Carub.0006s1211 Capsella rubella HOM05D009880 ORTHO05D004072 1.4e-22 111.3 149 36.9
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 1.4e-22 111.3 184 36.4
Ah.03g136430 Amaranthus hybridus HOM05D007742 ORTHO05D004072 2.4e-22 110.5 143 40.6
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 4.1e-22 109.8 138 39.1
CSS0026315 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 5.3e-22 109.4 201 34.8
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 5.3e-22 109.4 176 37.5
Sc16g0003130 Simmondsia chinensis HOM05D007742 ORTHO05D004072 5.3e-22 109.4 153 37.3
Manes.04G094400 Manihot esculenta HOM05D007742 ORTHO05D004072 9.0e-22 108.6 173 36.4
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 5.0e-20 102.8 187 36.4
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 6.5e-20 102.4 170 34.1
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 6.5e-20 102.4 145 37.9
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 6.5e-20 102.4 145 37.9
BcaB07g31107 Brassica carinata HOM05D009880 ORTHO05D004072 8.5e-20 102.1 146 38.4
BcaC04g22033 Brassica carinata HOM05D009880 ORTHO05D004072 8.5e-20 102.1 145 37.9
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 1.1e-19 101.7 160 35.6
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 1.9e-19 100.9 145 37.2
Prupe.3G314400 Prunus persica HOM05D007742 ORTHO05D004072 3.2e-19 100.1 166 36.1
Gorai.001G196100 Gossypium raimondii HOM05D018961 ORTHO05D004072 4.2e-19 99.8 163 34.4
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 4.2e-19 99.8 199 34.2
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 4.2e-19 99.8 199 34.2
A09p19280 Brassica napus HOM05D009880 ORTHO05D004072 5.5e-19 99.4 145 36.6
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 7.2e-19 99.0 194 35.1
Gohir.A07G168700 Gossypium hirsutum HOM05D018961 ORTHO05D004072 1.2e-18 98.2 162 34.6
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 1.2e-18 98.2 161 33.5
Gorai.001G095300 Gossypium raimondii HOM05D018961 ORTHO05D004072 2.1e-18 97.4 156 35.9
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 3.6e-18 96.7 149 35.6
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 6.1e-18 95.9 150 33.3
Duzib138G0881 Durio zibethinus HOM05D007742 ORTHO05D004072 8.8e-17 92.0 180 34.4
Aa31LG2G11790 Aethionema arabicum HOM05D009880 ORTHO05D004072 2.0e-16 90.9 152 39.5
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 2.5e-16 90.5 150 31.3
Duzib138G1433 Durio zibethinus HOM05D018961 ORTHO05D004072 4.3e-16 89.7 213 30.0
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 4.3e-16 89.7 170 31.2
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 5.7e-16 89.4 160 30.6
Actinidia37712 Actinidia chinensis HOM05D007742 ORTHO05D004072 7.4e-16 89.0 152 32.2
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 7.4e-16 89.0 150 32.7
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 1.7e-15 87.8 138 32.6
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 1.7e-15 87.8 156 32.1
Carub.0002s0844 Capsella rubella HOM05D009880 ORTHO05D004072 2.2e-15 87.4 152 33.6
DCAR_008617 Daucus carota HOM05D007742 ORTHO05D004072 2.2e-15 87.4 156 33.3
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 2.2e-15 87.4 184 29.3
MSTRG.25687 Avicennia marina HOM05D007742 ORTHO05D004072 3.7e-15 86.7 142 39.4
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 3.7e-15 86.7 105 39.0
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 3.7e-15 86.7 105 39.0
AT1G54930 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 4.8e-15 86.3 159 33.3
THA.LOC104823128 Tarenaya hassleriana HOM05D009880 ORTHO05D004072 8.2e-15 85.5 110 40.0
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 1.1e-14 85.1 151 33.8
Aa31LG2G11730 Aethionema arabicum HOM05D009880 ORTHO05D004072 1.8e-14 84.3 118 39.8
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 2.4e-14 84.0 151 33.8
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 3.1e-14 83.6 148 30.4
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 3.1e-14 83.6 149 30.2
COL.COLO4_13391 Corchorus olitorius HOM05D018961 ORTHO05D004072 1.5e-13 81.3 184 30.4
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 2.0e-13 80.9 160 27.5
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 2.0e-13 80.9 177 31.1
SGA_v2.0_scaffold305G47989 Striga asiatica HOM05D007742 ORTHO05D004072 2.0e-13 80.9 120 37.5
Haze_14967 Corylus avellana HOM05D007742 ORTHO05D004072 2.6e-13 80.5 170 31.2
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 3.4e-13 80.1 150 31.3
CsaV3_4G007470 Cucumis sativus L. HOM05D008124 ORTHO05D004072 3.4e-13 80.1 141 35.5
Nn4g26556 Nelumbo nucifera HOM05D008124 ORTHO05D004072 5.9e-13 79.3 158 32.9
CDE02G3354 Ceratophyllum demersum HOM05D008124 ORTHO05D004072 7.7e-13 79.0 118 33.1
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 7.7e-13 79.0 133 33.8
Migut.A00628 Erythranthe guttata HOM05D007742 ORTHO05D004072 1.0e-12 78.6 118 38.1
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 1.0e-12 78.6 133 35.3
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 1.0e-12 78.6 153 30.7
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 1.0e-12 78.6 111 38.7
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 1.7e-12 77.8 162 28.4
AUR62037803 Chenopodium quinoa HOM05D007742 ORTHO05D004072 5.0e-12 76.3 144 30.6
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 5.0e-12 76.3 148 30.4
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 6.5e-12 75.9 106 37.7
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 1.1e-11 75.1 129 34.1
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 1.1e-11 75.1 129 34.1
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 1.4e-11 74.7 147 27.2
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 1.9e-11 74.3 180 27.8
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 2.5e-11 73.9 110 37.3
Glyma.16G046800 Glycine max HOM05D007742 ORTHO05D004072 2.5e-11 73.9 143 34.3
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 3.2e-11 73.6 173 26.6
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 3.2e-11 73.6 109 32.1
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 4.2e-11 73.2 107 36.4
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 7.2e-11 72.4 173 26.6
TWI60G0051 Tripterygium wilfordii HOM05D008124 ORTHO05D004072 7.2e-11 72.4 108 33.3
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 7.2e-11 72.4 132 32.6
CSS0000950 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 9.4e-11 72.0 144 31.9
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 1.2e-10 71.6 129 33.3
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 1.2e-10 71.6 129 33.3
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 1.2e-10 71.6 92 42.4
Rhsim08G0038200 Rhododendron simsii HOM05D000001 ORTHO05D000003 1.2e-10 71.6 157 30.6
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 1.2e-10 71.6 174 27.6
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 2.1e-10 70.9 105 33.3
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 2.7e-10 70.5 130 30.8
Dinv20269 Davidia involucrata HOM05D008124 ORTHO05D004072 2.7e-10 70.5 118 33.1
CANSAT64G0751 Cannabis sativa HOM05D007742 ORTHO05D004072 4.7e-10 69.7 154 27.9
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 7.9e-10 68.9 89 33.7
MBI02_g36352_MAGBIO Magnolia biondii HOM05D008124 ORTHO05D004072 1.8e-09 67.8 110 34.5
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 1.8e-09 67.8 99 33.3
Potri.001G318100 Populus trichocarpa HOM05D008124 ORTHO05D004072 3.0e-09 67.0 117 29.9
FAN02G4088 Fragaria x ananassa HOM05D008124 ORTHO05D004072 6.7e-09 65.9 114 30.7
Sabra16G0201300 Salix brachista HOM05D008124 ORTHO05D004072 1.5e-08 64.7 112 30.4
AUR62017629 Chenopodium quinoa HOM05D008124 ORTHO05D004072 6.3e-07 59.3 82 35.4
CSS0006654 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 1.8e-06 57.8 71 36.6
CSS0017436 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 1.8e-06 57.8 71 36.6
PGR004G0249 Punica granatum HOM05D008124 ORTHO05D004072 2.4e-06 57.4 87 32.2
CSS0014704 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 4.1e-06 56.6 45 53.3
CSS0005680 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 5.3e-06 56.2 45 51.1
CSS0050094 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 5.3e-06 56.2 45 51.1
AUR62015176 Chenopodium quinoa HOM05D008124 ORTHO05D004072 5.3e-06 56.2 82 32.9
Ah.01g013150 Amaranthus hybridus HOM05D008124 ORTHO05D004072 7.0e-06 55.8 91 31.9


User provided reference genes

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