Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 5.6e-179 630.9 345 100.0
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 3.9e-148 528.5 345 83.8
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 2.2e-143 512.7 345 81.4
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 1.6e-141 506.5 345 80.6
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 1.1e-139 500.4 345 79.1
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 3.1e-137 492.3 345 77.7
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 4.0e-137 491.9 345 77.7
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 4.5e-136 488.4 344 77.6
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 5.8e-136 488.0 345 76.5
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 2.2e-135 486.1 345 78.8
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 6.5e-135 484.6 345 76.2
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 1.4e-134 483.4 335 77.3
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 1.9e-134 483.0 345 75.1
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 2.5e-134 482.6 345 77.1
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 4.2e-134 481.9 337 75.4
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 1.2e-133 480.3 346 76.0
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 7.9e-133 477.6 345 76.2
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 5.1e-132 474.9 345 76.2
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 8.7e-132 474.2 335 75.8
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 3.3e-131 472.2 345 72.5
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 3.3e-131 472.2 342 75.4
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 2.1e-130 469.5 331 79.2
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 2.1e-130 469.5 345 73.9
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 2.8e-130 469.2 345 74.2
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 4.8e-130 468.4 345 74.2
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 1.8e-129 466.5 345 74.5
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 3.1e-129 465.7 345 74.2
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 9.0e-129 464.2 345 73.3
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 1.2e-128 463.8 347 72.6
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 2.0e-128 463.0 345 73.3
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 3.4e-128 462.2 345 72.5
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 4.5e-128 461.8 345 72.5
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 2.2e-127 459.5 345 73.6
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.2e-127 459.5 345 73.6
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.2e-127 459.5 345 73.6
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 3.8e-127 458.8 345 75.4
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 5.0e-127 458.4 345 75.4
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.1e-126 457.2 345 71.6
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 1.9e-126 456.4 345 71.0
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.5e-126 456.1 345 73.0
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 3.2e-126 455.7 345 71.3
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 3.2e-126 455.7 345 73.0
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 4.2e-126 455.3 335 73.7
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 6.1e-125 451.4 345 72.5
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 1.0e-124 450.7 342 72.2
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 1.3e-124 450.3 343 72.9
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 9.7e-123 444.1 372 68.0
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 9.7e-123 444.1 345 69.9
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 4.8e-122 441.8 341 71.6
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 6.3e-122 441.4 345 69.9
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 6.3e-122 441.4 343 71.1
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 6.3e-122 441.4 345 69.3
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 1.5e-120 436.8 345 72.2
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 2.0e-120 436.4 345 69.0
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 5.0e-119 431.8 345 69.0
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 6.5e-119 431.4 317 75.4
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 3.2e-118 429.1 345 68.7
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 4.2e-118 428.7 345 69.3
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 5.5e-118 428.3 345 69.3
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 1.1e-115 420.6 328 73.2
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 7.4e-115 417.9 341 68.0
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 1.7e-114 416.8 345 68.4
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 1.7e-114 416.8 345 65.8
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 3.7e-114 415.6 315 70.5
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 9.1e-113 411.0 345 65.5
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 5.9e-112 408.3 345 66.7
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 5.9e-112 408.3 341 66.6
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.5e-110 402.9 345 66.1
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.3e-108 396.4 345 65.2
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 6.7e-108 394.8 289 75.4
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 1.1e-107 394.0 319 69.0
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 1.5e-107 393.7 345 66.1
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 4.4e-107 392.1 345 63.8
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 9.7e-107 391.0 394 58.6
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 2.2e-106 389.8 289 71.3
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 3.7e-106 389.0 345 66.1
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 3.1e-105 386.0 345 65.5
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 3.1e-105 386.0 345 63.5
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.6e-104 383.6 345 64.1
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.7e-103 380.2 345 63.8
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 2.2e-103 379.8 346 63.3
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 2.9e-103 379.4 345 62.6
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.9e-103 379.4 341 62.2
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 6.1e-101 371.7 345 62.3
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 5.2e-100 368.6 337 62.9
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 3.3e-99 365.9 340 61.5
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 4.4e-99 365.5 345 60.3
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 1.3e-98 364.0 346 61.6
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.2e-98 363.2 345 60.3
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.2e-98 363.2 345 60.3
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.4e-97 360.5 345 60.0
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 9.1e-97 357.8 347 58.5
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 7.7e-96 354.8 338 59.2
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 2.2e-95 353.2 345 60.6
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 3.8e-95 352.4 345 59.1
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 9.4e-94 347.8 323 60.1
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 1.8e-92 343.6 345 59.4
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.0e-91 340.1 287 64.5
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 9.8e-91 337.8 343 57.1
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 1.7e-90 337.0 345 55.9
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 1.7e-90 337.0 324 58.6
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 2.8e-90 336.3 345 57.4
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 3.1e-89 332.8 348 56.6
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 5.4e-89 332.0 366 54.4
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 5.4e-89 332.0 292 64.4
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 7.0e-89 331.6 261 67.0
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 9.1e-89 331.3 295 65.1
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 1.6e-88 330.5 373 55.2
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 5.5e-86 322.0 346 57.2
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 7.2e-86 321.6 350 55.7
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 2.8e-85 319.7 350 55.4
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 4.7e-85 318.9 348 56.9
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 1.4e-84 317.4 336 58.3
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 1.4e-81 307.4 348 55.2
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 9.2e-81 304.7 325 56.9
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.7e-79 300.4 341 55.1
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 2.3e-79 300.1 337 54.6
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 9.5e-78 294.7 348 54.0
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 9.5e-78 294.7 348 54.0
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.2e-77 294.3 329 53.2
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 2.1e-77 293.5 345 52.2
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 2.8e-77 293.1 348 53.7
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 2.3e-76 290.0 348 53.2
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 4.0e-76 289.3 315 55.9
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 4.4e-75 285.8 348 51.4
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 7.5e-75 285.0 346 53.5
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 2.9e-74 283.1 340 47.4
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 9.2e-73 278.1 346 52.3
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 7.8e-72 275.0 343 51.0
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 1.3e-71 274.2 345 51.3
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.7e-71 273.9 344 51.5
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.9e-70 270.4 303 56.1
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 4.3e-70 269.2 343 46.6
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 3.6e-69 266.2 323 52.9
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 5.2e-68 262.3 335 51.0
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 8.9e-68 261.5 345 47.0
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 3.4e-67 259.6 336 51.2
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 2.7e-64 250.0 346 46.2
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 3.5e-64 249.6 343 47.8
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 1.7e-63 247.3 263 55.5
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 3.9e-63 246.1 336 49.4
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 8.6e-63 245.0 284 54.6
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 7.3e-62 241.9 285 54.0
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 2.8e-61 240.0 296 52.0
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.8e-61 240.0 289 51.6
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 4.0e-60 236.1 228 60.1
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 1.5e-59 234.2 343 40.8
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 1.5e-59 234.2 303 50.8
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 9.9e-59 231.5 339 43.1
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 1.9e-57 227.3 330 44.5
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 1.8e-52 210.7 293 46.8
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 8.9e-52 208.4 138 84.8
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 1.5e-51 207.6 356 43.0
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 4.4e-51 206.1 296 44.6
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 9.9e-51 204.9 343 37.3
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 1.1e-49 201.4 354 41.8
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 1.3e-42 177.9 185 53.5
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 4.9e-42 176.0 226 47.8
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 2.4e-41 173.7 266 44.7
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 1.2e-40 171.4 140 67.9
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.5e-38 164.5 302 41.7
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 1.4e-36 157.9 176 53.4
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 3.1e-36 156.8 172 57.0
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 3.9e-31 139.8 317 36.9
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 3.3e-30 136.7 284 38.7
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 2.7e-24 117.1 289 36.7
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 2.7e-24 117.1 145 51.7
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 4.0e-20 103.2 314 34.1
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 4.0e-20 103.2 314 34.1
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 2.7e-16 90.5 100 61.0
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 9.7e-14 82.0 54 81.5
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 9.7e-14 82.0 55 80.0
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 4.8e-13 79.7 111 54.1
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 2.2e-10 70.9 289 30.1
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 5.1e-07 59.7 105 47.6


User provided reference genes

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