Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0007665 Lotus japonicus HOM05D005908 ORTHO05D007235 1.0e-162 576.6 289 100.0
Lj4g0016789 Lotus japonicus HOM05D005908 ORTHO05D007235 7.0e-159 563.9 289 98.6
Lj2g0024281 Lotus japonicus HOM05D005908 ORTHO05D007235 4.7e-155 551.2 285 97.9
TPR.G5821 Trifolium pratense HOM05D005908 ORTHO05D007235 2.1e-126 456.1 287 80.1
Glyma.16G198400 Glycine max HOM05D005908 ORTHO05D007235 2.4e-122 442.6 288 78.5
VMungo0464G0636 Vigna mungo HOM05D005908 ORTHO05D007235 1.5e-121 439.9 287 77.0
Lalb_Chr01g0009141 Lupinus albus HOM05D005908 ORTHO05D007235 4.4e-121 438.3 285 77.5
Psat1g113160 Pisum sativum HOM05D005908 ORTHO05D007235 2.3e-117 426.0 290 74.1
arahy.Tifrunner.gnm1.ann1.580JC2 Arachis hypogaea HOM05D005908 ORTHO05D007235 1.1e-111 407.1 296 72.6
arahy.Tifrunner.gnm1.ann1.K8NCYF Arachis hypogaea HOM05D005908 ORTHO05D007235 1.1e-111 407.1 307 70.4
Phvul.004G121600 Phaseolus vulgaris HOM05D005908 ORTHO05D007235 7.4e-92 341.3 243 71.6
QL09p014976 Quercus lobata HOM05D005908 ORTHO05D007235 5.3e-90 335.1 280 59.3
Dinv35179 Davidia involucrata HOM05D005908 ORTHO05D007235 3.4e-89 332.4 260 65.0
GSVIVG01010617001 Vitis vinifera HOM05D005908 ORTHO05D007235 1.1e-87 327.4 290 58.6
CiPaw.04G067300 Carya illinoinensis HOM05D005908 ORTHO05D007235 2.5e-87 326.2 267 61.0
Actinidia32893 Actinidia chinensis HOM05D005908 ORTHO05D007235 4.6e-86 322.0 274 59.1
MD13G1243600 Malus domestica HOM05D005908 ORTHO05D007235 5.7e-84 315.1 290 57.9
Hma1.2p1_0270F.1_g108430 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 2.8e-83 312.8 248 61.7
vmacro08977 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 2.8e-83 312.8 282 55.7
TAR375G0795 Trochodendron aralioides HOM05D005908 ORTHO05D007235 3.7e-83 312.4 241 64.7
Lj1A993G71 Lonicera japonica HOM05D005908 ORTHO05D007235 4.8e-83 312.0 283 55.5
Sabra15G0149500 Salix brachista HOM05D005908 ORTHO05D007235 6.3e-83 311.6 265 59.6
Cfa008281 Carpinus fangiana HOM05D005908 ORTHO05D007235 1.1e-82 310.8 225 66.2
TWI23G0151 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 1.1e-82 310.8 262 58.4
Potri.015G138400 Populus trichocarpa HOM05D005908 ORTHO05D007235 1.8e-82 310.1 283 56.5
Atru.chr1.515 Acer truncatum HOM05D005908 ORTHO05D007235 4.1e-82 308.9 281 55.9
CANSAT21G0021 Cannabis sativa HOM05D005908 ORTHO05D007235 9.1e-82 307.8 284 56.7
TWI39G0968 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 1.5e-81 307.0 282 55.3
Ciclev10005584m.g Citrus clementina HOM05D005908 ORTHO05D007235 2.0e-81 306.6 241 61.8
Gorai.006G046700 Gossypium raimondii HOM05D005908 ORTHO05D007235 2.0e-81 306.6 243 61.7
Manes.06G144000 Manihot esculenta HOM05D005908 ORTHO05D007235 2.0e-81 306.6 280 55.0
Gohir.D09G040800 Gossypium hirsutum HOM05D005908 ORTHO05D007235 2.6e-81 306.2 242 62.0
CANSAT21G0323 Cannabis sativa HOM05D005908 ORTHO05D007235 5.9e-81 305.1 284 56.3
Cc10_g10330 Coffea canephora HOM05D005908 ORTHO05D007235 1.7e-80 303.5 267 56.9
COL.COLO4_14265 Corchorus olitorius HOM05D005908 ORTHO05D007235 6.5e-80 301.6 241 61.4
Eucgr.K00226 Eucalyptus grandis HOM05D005908 ORTHO05D007235 6.5e-80 301.6 238 60.9
Sed0015226 Sechium edule HOM05D005908 ORTHO05D007235 1.9e-79 300.1 257 59.5
CsaV3_3G016830 Cucumis sativus L. HOM05D005908 ORTHO05D007235 3.2e-79 299.3 254 60.6
Thecc.03G170900 Theobroma cacao HOM05D005908 ORTHO05D007235 3.2e-79 299.3 242 60.7
ClCG05G007830 Citrullus lanatus HOM05D005908 ORTHO05D007235 4.2e-79 298.9 241 62.2
Nn6g34248 Nelumbo nucifera HOM05D005908 ORTHO05D007235 1.6e-78 297.0 250 59.2
vmacro06719 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 4.7e-78 295.4 297 51.5
RcHm_v2.0_Chr1g0376741 Rosa chinensis HOM05D005908 ORTHO05D007235 2.3e-77 293.1 266 56.8
MBI12_g29759_MAGBIO Magnolia biondii HOM05D005908 ORTHO05D007235 5.1e-77 292.0 263 55.9
Oeu030124.1 Olea europaea HOM05D005908 ORTHO05D007235 6.7e-77 291.6 279 53.0
SalBow1G0690 Salvia bowleyana HOM05D005908 ORTHO05D007235 2.0e-76 290.0 243 58.8
Lsat_1_v5_gn_2_133120 Lactuca sativa HOM05D005908 ORTHO05D007235 5.7e-76 288.5 242 59.1
Cpa.g.sc107.9 Carica papaya HOM05D005908 ORTHO05D007235 7.4e-76 288.1 285 54.0
FvH4_7g15530 Fragaria vesca HOM05D005908 ORTHO05D007235 9.7e-76 287.7 266 55.3
FAN06G2086 Fragaria x ananassa HOM05D005908 ORTHO05D007235 9.7e-76 287.7 266 55.3
FAN06G0652 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.3e-75 287.3 266 55.3
AL8G26480 Arabidopsis lyrata HOM05D005908 ORTHO05D007235 1.7e-75 287.0 280 56.4
FAN01G2408 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.2e-75 286.6 266 54.9
AT5G52110 Arabidopsis thaliana HOM05D005908 ORTHO05D007235 2.8e-75 286.2 280 55.0
Rhsim04G0117700 Rhododendron simsii HOM05D005908 ORTHO05D007235 3.7e-75 285.8 316 49.4
CARHR265040 Cardamine hirsuta HOM05D005908 ORTHO05D007235 4.8e-75 285.4 281 56.9
DCAR_009351 Daucus carota HOM05D005908 ORTHO05D007235 4.8e-75 285.4 241 56.4
FAN10G2728 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.1e-74 284.3 266 54.9
CAN.G548.2 Capsicum annuum HOM05D005908 ORTHO05D007235 1.8e-74 283.5 263 53.2
Aa31LG3G8480 Aethionema arabicum HOM05D005908 ORTHO05D007235 4.1e-74 282.3 280 55.4
Aqoxy7G00441 Aquilegia oxysepala HOM05D005908 ORTHO05D007235 4.1e-74 282.3 255 57.6
FAN03G0397 Fragaria x ananassa HOM05D005908 ORTHO05D007235 5.3e-74 282.0 265 54.7
MSTRG.8762 Avicennia marina HOM05D005908 ORTHO05D007235 7.0e-74 281.6 288 47.6
HanXRQChr07g0206851 Helianthus annuus HOM05D005908 ORTHO05D007235 7.0e-74 281.6 245 56.7
PGSC0003DMG402014313 Solanum tuberosum HOM05D005908 ORTHO05D007235 7.0e-74 281.6 258 52.7
FAN10G3232 Fragaria x ananassa HOM05D005908 ORTHO05D007235 9.1e-74 281.2 266 54.5
Sopen03g005070 Solanum pennellii HOM05D005908 ORTHO05D007235 1.5e-73 280.4 274 51.1
Solyc03g026200.4 Solanum lycopersicum HOM05D005908 ORTHO05D007235 2.0e-73 280.0 263 52.1
Thhalv10014339m.g Eutrema salsugineum HOM05D005908 ORTHO05D007235 4.5e-73 278.9 281 52.7
THA.LOC104811995 Tarenaya hassleriana HOM05D005908 ORTHO05D007235 1.0e-72 277.7 264 55.3
ECA238G1518 Erigeron canadensis HOM05D005908 ORTHO05D007235 1.3e-72 277.3 263 53.2
Carub.0008s1219 Capsella rubella HOM05D005908 ORTHO05D007235 2.2e-72 276.6 281 53.7
Sp6g14360 Schrenkiella parvula HOM05D005908 ORTHO05D007235 6.5e-72 275.0 281 53.0
SpUn0060_0050 Schrenkiella parvula HOM05D005908 ORTHO05D007235 6.5e-72 275.0 281 53.0
Migut.F00374 Erythranthe guttata HOM05D005908 ORTHO05D007235 8.5e-72 274.6 275 52.0
Haze_13753 Corylus avellana HOM05D005908 ORTHO05D007235 1.9e-71 273.5 221 62.9
SGA_v2.0_scaffold2G01076 Striga asiatica HOM05D005908 ORTHO05D007235 2.5e-71 273.1 271 51.7
PSO782G1770 Papaver somniferum HOM05D005908 ORTHO05D007235 3.2e-71 272.7 289 49.1
BraA03t10874Z Brassica rapa HOM05D005908 ORTHO05D007235 9.4e-71 271.2 280 51.4
A03p15840 Brassica napus HOM05D005908 ORTHO05D007235 1.2e-70 270.8 280 51.4
Sc25g0000390 Simmondsia chinensis HOM05D005908 ORTHO05D007235 2.1e-70 270.0 238 55.5
Hund04705 Selenicereus undatus HOM05D005908 ORTHO05D007235 2.7e-70 269.6 249 53.8
Ah.13g068320 Amaranthus hybridus HOM05D005908 ORTHO05D007235 8.0e-70 268.1 273 49.5
BcaB01g04184 Brassica carinata HOM05D005908 ORTHO05D007235 8.0e-70 268.1 269 53.2
BcaC01g06164 Brassica carinata HOM05D005908 ORTHO05D007235 1.0e-69 267.7 280 51.4
C03p18500 Brassica napus HOM05D005908 ORTHO05D007235 1.0e-69 267.7 280 51.4
BolC3t14247H Brassica oleracea HOM05D005908 ORTHO05D007235 1.0e-69 267.7 280 51.4
PSO478G3277 Papaver somniferum HOM05D005908 ORTHO05D007235 1.8e-69 266.9 289 48.4
Hma1.2p1_0270F.1_g108420 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 3.9e-69 265.8 253 53.8
AUR62016029 Chenopodium quinoa HOM05D005908 ORTHO05D007235 3.1e-66 256.1 249 50.2
Prupe.1G077000 Prunus persica HOM05D005908 ORTHO05D007235 1.6e-65 253.8 266 50.4
HPP92_001363 Vanilla planifolia HOM05D005908 ORTHO05D007235 2.6e-65 253.1 239 51.5
CDE11G0458 Ceratophyllum demersum HOM05D003547 ORTHO05D004236 3.8e-64 249.2 236 51.3
Zm00001eb021390 Zea mays HOM05D005908 ORTHO05D007235 1.2e-62 244.2 276 48.6
ATR0757G107 Amborella trichopoda HOM05D005908 ORTHO05D007235 1.6e-62 243.8 232 53.0
Gohir.A09G040000 Gossypium hirsutum HOM05D005908 ORTHO05D007235 1.4e-61 240.7 189 64.0
Nitab4.5_0005024g0020 Nicotiana tabacum HOM05D005908 ORTHO05D007235 4.0e-61 239.2 240 51.2
Nitab4.5_0001083g0110 Nicotiana tabacum HOM05D005908 ORTHO05D007235 9.7e-60 234.6 263 47.9
AUR62021234 Chenopodium quinoa HOM05D005908 ORTHO05D007235 3.7e-59 232.6 212 54.7
EL10Ac3g05695 Beta vulgaris HOM05D005908 ORTHO05D007235 3.2e-55 219.5 192 57.3
vmacro06721 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 7.2e-55 218.4 264 46.2
MELO3C006877.2 Cucumis melo HOM05D005908 ORTHO05D007235 1.8e-50 203.8 270 44.8
Peaxi162Scf00915g00250 Petunia axillaris HOM05D005908 ORTHO05D007235 2.7e-49 199.9 295 42.0
HPP92_001354 Vanilla planifolia HOM05D005908 ORTHO05D007235 4.0e-45 186.0 239 42.7
unitig_37.g11958 Utricularia gibba HOM05D005908 ORTHO05D007235 2.8e-43 179.9 189 48.7
SEGI_20513 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 2.5e-39 166.8 262 38.9
Lsat_1_v5_gn_2_133160 Lactuca sativa HOM05D005908 ORTHO05D007235 1.8e-37 160.6 110 69.1
Mapoly0051s0108 Marchantia polymorpha HOM05D005908 ORTHO05D007235 2.0e-36 157.1 237 38.4
AagrBONN_evm.TU.Sc2ySwM_228.723 Anthoceros agrestis HOM05D005908 ORTHO05D007235 1.7e-32 144.1 238 36.1
CSS0007682 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 5.0e-32 142.5 140 57.1
Pp3c13_15400 Physcomitrium patens HOM05D005908 ORTHO05D007235 1.5e-31 141.0 264 33.7
SMO364G0827 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 7.5e-28 128.6 252 33.7
Dinv28477 Davidia involucrata HOM05D005908 ORTHO05D007235 1.7e-27 127.5 110 62.7
CSS0026196 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 1.6e-25 120.9 101 53.5
CSS0048064 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 1.6e-25 120.9 101 53.5
FAN03G3234 Fragaria x ananassa HOM05D005908 ORTHO05D007235 7.8e-25 118.6 167 40.1
FAN03G2347 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.3e-24 117.1 167 40.1
Actinidia34081 Actinidia chinensis HOM05D005908 ORTHO05D007235 4.7e-22 109.4 144 42.4
SMO353G0077 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 3.1e-21 106.7 232 33.2
Cre12.g537850 Chlamydomonas reinhardtii HOM05D005908 ORTHO05D007235 5.2e-21 105.9 303 31.4
MCO01G567 Micromonas commoda HOM05D005908 ORTHO05D007235 8.3e-19 98.6 248 30.6
SEGI_01877 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 1.4e-18 97.8 142 43.7
CBR_g58789 Chara braunii HOM05D005908 ORTHO05D007235 2.3e-16 90.5 276 27.9
MD16G1250200 Malus domestica HOM05D005908 ORTHO05D007235 6.2e-14 82.4 74 55.4
Os10g0522500 Oryza sativa ssp. japonica HOM05D005908 ORTHO05D007235 5.2e-13 79.3 51 76.5
FAN01G0300 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.2e-12 78.2 119 39.5
MELO3C031805.2 Cucumis melo HOM05D005908 ORTHO05D007235 9.3e-10 68.6 64 53.1
MD12G1162900 Malus domestica HOM05D000067 ORTHO05D000097 9.3e-10 68.6 43 72.1
FvH4_7g29023 Fragaria vesca HOM05D005908 ORTHO05D007235 1.7e-08 64.3 64 48.4
Hma1.2p1_0010F.1_g006900 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 3.9e-08 63.2 59 47.5


User provided reference genes

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