Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0006312 Lotus japonicus HOM05D001969 ORTHO05D009003 1.9e-53 212.6 138 100.0
Lj3g0006045 Lotus japonicus HOM05D001969 ORTHO05D009003 4.1e-48 194.9 138 93.5
Ca_20693_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 1.2e-39 166.8 138 83.3
Ca_30106_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 1.2e-39 166.8 138 83.3
Medtr4g065010 Medicago truncatula HOM05D001969 ORTHO05D009003 1.6e-39 166.4 133 84.2
Psat7g197120 Pisum sativum HOM05D001969 ORTHO05D009003 4.5e-39 164.9 138 83.3
Phvul.011G177800 Phaseolus vulgaris HOM05D001969 ORTHO05D009003 2.9e-38 162.2 139 81.3
VMungo1127G0255 Vigna mungo HOM05D001969 ORTHO05D009003 3.8e-38 161.8 139 80.6
TPR.G21647 Trifolium pratense HOM05D001969 ORTHO05D009003 5.0e-38 161.4 138 81.2
Medtr4g046043 Medicago truncatula HOM05D001969 ORTHO05D009003 6.5e-38 161.0 138 79.7
Glyma.18G235000 Glycine max HOM05D001969 ORTHO05D009003 5.5e-37 157.9 139 80.6
Glyma.09G257600 Glycine max HOM05D001969 ORTHO05D009003 1.4e-35 153.3 139 77.7
Lalb_Chr19g0135421 Lupinus albus HOM05D001969 ORTHO05D009003 1.2e-34 150.2 139 79.1
vmacro09267 Vaccinium macrocarpon HOM05D001969 ORTHO05D009003 4.5e-31 138.3 132 72.0
Cc11_g01780 Coffea canephora HOM05D001969 ORTHO05D009003 1.0e-30 137.1 137 68.6
TPR.G31971 Trifolium pratense HOM05D001669 ORTHO05D006496 1.0e-30 137.1 78 82.1
Cc11_g01770 Coffea canephora HOM05D001969 ORTHO05D009003 8.6e-30 134.0 138 67.4
MSTRG.23988 Avicennia marina HOM05D001969 ORTHO05D009003 5.5e-29 131.3 136 67.6
TAR627G0343 Trochodendron aralioides HOM05D001969 ORTHO05D009003 8.0e-28 127.5 138 66.7
TAR627G0582 Trochodendron aralioides HOM05D001969 ORTHO05D009003 8.0e-28 127.5 138 66.7
TAR629G1647 Trochodendron aralioides HOM05D001969 ORTHO05D009003 1.0e-27 127.1 137 64.2
CSS0025708 Camellia sinensis var. sinensis HOM05D001969 ORTHO05D009003 1.8e-27 126.3 135 65.2
CANSAT78G0375 Cannabis sativa HOM05D001969 ORTHO05D003463 3.0e-27 125.6 134 67.2
Atru.chr6.3054 Acer truncatum HOM05D001969 ORTHO05D009003 4.0e-27 125.2 131 67.9
Nn1g06730 Nelumbo nucifera HOM05D001969 ORTHO05D009003 8.9e-27 124.0 137 57.7
Nitab4.5_0006575g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 2.6e-26 122.5 138 63.8
SGA_v2.0_scaffold135G34841 Striga asiatica HOM05D001969 ORTHO05D009003 5.7e-26 121.3 138 64.5
Rhsim04G0021700 Rhododendron simsii HOM05D001969 ORTHO05D009003 1.3e-25 120.2 132 66.7
Aqoxy6G02660 Aquilegia oxysepala HOM05D001969 ORTHO05D009003 1.7e-25 119.8 138 62.3
Nn1g03931 Nelumbo nucifera HOM05D001969 ORTHO05D009003 1.7e-25 119.8 138 61.6
Nitab4.5_0003069g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 1.7e-25 119.8 138 61.6
CANSAT21G1059 Cannabis sativa HOM05D001969 ORTHO05D009003 2.2e-25 119.4 138 66.7
Dinv23700 Davidia involucrata HOM05D001969 ORTHO05D009003 2.2e-25 119.4 133 61.7
Oeu047331.1 Olea europaea HOM05D001969 ORTHO05D009003 2.2e-25 119.4 136 64.0
SalBow7G2523 Salvia bowleyana HOM05D001969 ORTHO05D009003 2.2e-25 119.4 138 60.9
Lsat_1_v5_gn_3_137700 Lactuca sativa HOM05D001969 ORTHO05D009003 2.9e-25 119.0 138 50.0
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 4.9e-25 118.2 125 69.6
DCAR_011200 Daucus carota HOM05D001969 ORTHO05D009003 4.9e-25 118.2 131 40.5
Potri.013G145800 Populus trichocarpa HOM05D001969 ORTHO05D009003 4.9e-25 118.2 131 66.4
Sed0009336 Sechium edule HOM05D001969 ORTHO05D009003 4.9e-25 118.2 130 65.4
HanXRQChr09g0274351 Helianthus annuus HOM05D001969 ORTHO05D009003 6.3e-25 117.9 137 58.4
HanXRQChr11g0350221 Helianthus annuus HOM05D001969 ORTHO05D009003 6.3e-25 117.9 137 59.1
SalBow1G0343 Salvia bowleyana HOM05D001969 ORTHO05D009003 8.3e-25 117.5 135 60.7
SalBow7G4035 Salvia bowleyana HOM05D001969 ORTHO05D009003 8.3e-25 117.5 135 60.7
ATR1001G005 Amborella trichopoda HOM05D001969 ORTHO05D009003 2.4e-24 115.9 137 58.4
HanXRQChr06g0167021 Helianthus annuus HOM05D001969 ORTHO05D009003 2.4e-24 115.9 137 58.4
SGA_v2.0_scaffold3G01553 Striga asiatica HOM05D001969 ORTHO05D009003 2.4e-24 115.9 135 61.5
Cfa003704 Carpinus fangiana HOM05D001969 ORTHO05D009003 5.4e-24 114.8 129 64.3
Actinidia39674 Actinidia chinensis HOM05D001969 ORTHO05D003463 7.0e-24 114.4 130 61.5
Nitab4.5_0003358g0010 Nicotiana tabacum HOM05D001969 ORTHO05D009003 7.0e-24 114.4 130 63.8
RcHm_v2.0_Chr2g0127151 Rosa chinensis HOM05D001969 ORTHO05D009003 7.0e-24 114.4 132 48.5
COL.COLO4_13690 Corchorus olitorius HOM05D001969 ORTHO05D009003 9.2e-24 114.0 130 63.8
Actinidia39300 Actinidia chinensis HOM05D001969 ORTHO05D009003 1.2e-23 113.6 137 62.8
Solyc07g064840.3 Solanum lycopersicum HOM05D001969 ORTHO05D009003 1.2e-23 113.6 129 61.2
PGSC0003DMG400022306 Solanum tuberosum HOM05D001969 ORTHO05D009003 1.6e-23 113.2 129 61.2
TWI18G1087 Tripterygium wilfordii HOM05D001969 ORTHO05D009003 1.6e-23 113.2 130 53.8
ECA236G1367 Erigeron canadensis HOM05D001969 ORTHO05D009003 2.0e-23 112.8 137 54.7
Nitab4.5_0002260g0270 Nicotiana tabacum HOM05D001969 ORTHO05D009003 2.0e-23 112.8 130 63.1
QL08p048209 Quercus lobata HOM05D001969 ORTHO05D009003 2.0e-23 112.8 130 60.8
Sopen07g033040 Solanum pennellii HOM05D001969 ORTHO05D009003 2.0e-23 112.8 129 61.2
ECA233G3782 Erigeron canadensis HOM05D001969 ORTHO05D009003 4.6e-23 111.7 137 54.0
Migut.H00150 Erythranthe guttata HOM05D001969 ORTHO05D009003 5.9e-23 111.3 131 58.8
Haze_15783 Corylus avellana HOM05D001969 ORTHO05D009003 1.0e-22 110.5 124 66.1
Thecc.02G172900 Theobroma cacao HOM05D001969 ORTHO05D009003 1.0e-22 110.5 130 62.3
Gohir.A03G159600 Gossypium hirsutum HOM05D001969 ORTHO05D009003 1.7e-22 109.8 130 63.8
Lju41E32T0 Lonicera japonica HOM05D001969 ORTHO05D009003 2.3e-22 109.4 87 56.3
Peaxi162Scf00423g00066 Petunia axillaris HOM05D001969 ORTHO05D009003 2.9e-22 109.0 130 60.0
Sc03g0002190 Simmondsia chinensis HOM05D001969 ORTHO05D009003 2.9e-22 109.0 137 53.3
Gohir.D02G182700 Gossypium hirsutum HOM05D001969 ORTHO05D009003 5.0e-22 108.2 130 63.1
MBI06_g08467_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 5.0e-22 108.2 138 59.4
PGR142G0421 Punica granatum HOM05D001969 ORTHO05D003463 5.0e-22 108.2 121 68.6
Ciclev10017445m.g Citrus clementina HOM05D001969 ORTHO05D003463 6.6e-22 107.8 124 51.6
MBI04_g38761_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 6.6e-22 107.8 130 60.8
AUR62029451 Chenopodium quinoa HOM05D001969 ORTHO05D009003 8.6e-22 107.5 131 57.3
CAN.G1310.15 Capsicum annuum HOM05D001969 ORTHO05D009003 1.5e-21 106.7 130 60.0
MD17G1082700 Malus domestica HOM05D001969 ORTHO05D009003 1.5e-21 106.7 139 62.6
MD09G1092600 Malus domestica HOM05D001969 ORTHO05D009003 5.6e-21 104.8 139 59.0
unitig_748.g8143 Utricularia gibba HOM05D001969 ORTHO05D009003 5.6e-21 104.8 138 58.0
Duzib248G0251 Durio zibethinus HOM05D001969 ORTHO05D009003 9.5e-21 104.0 130 60.8
CAN.G1720.5 Capsicum annuum HOM05D001969 ORTHO05D009003 1.6e-20 103.2 130 58.5
Zm00001eb194600 Zea mays HOM05D001969 ORTHO05D009003 6.1e-20 101.3 129 57.4
Zm00001eb225500 Zea mays HOM05D001969 ORTHO05D009003 6.1e-20 101.3 129 57.4
Zm00001eb414500 Zea mays HOM05D001969 ORTHO05D009003 8.0e-20 100.9 129 56.6
Gorai.005G205100 Gossypium raimondii HOM05D001969 ORTHO05D003463 1.4e-19 100.1 118 66.1
Zm00001eb194610 Zea mays HOM05D001969 ORTHO05D009003 1.4e-19 100.1 129 56.6
Lsat_1_v5_gn_2_3941 Lactuca sativa HOM05D001969 ORTHO05D009003 1.8e-19 99.8 124 37.9
Zm00001eb072880 Zea mays HOM05D001969 ORTHO05D009003 1.8e-19 99.8 127 58.3
Mapoly0071s0092 Marchantia polymorpha HOM05D001969 ORTHO05D009003 2.3e-19 99.4 137 55.5
THA.LOC104811178 Tarenaya hassleriana HOM05D001969 ORTHO05D009003 4.0e-19 98.6 135 37.8
GSVIVG01030575001 Vitis vinifera HOM05D001969 ORTHO05D009003 5.2e-19 98.2 117 61.5
CiPaw.16G086600 Carya illinoinensis HOM05D001969 ORTHO05D009003 6.8e-19 97.8 131 61.1
Eucgr.K00935 Eucalyptus grandis HOM05D001969 ORTHO05D009003 1.2e-18 97.1 136 53.7
Sed0013701 Sechium edule HOM05D001969 ORTHO05D009003 1.2e-18 97.1 88 50.0
Zm00001eb350110 Zea mays HOM05D001969 ORTHO05D009003 1.2e-18 97.1 129 55.8
EL10Ac3g05654 Beta vulgaris HOM05D001969 ORTHO05D003463 1.5e-18 96.7 129 58.9
CsaV3_6G012510 Cucumis sativus L. HOM05D001969 ORTHO05D003463 2.6e-18 95.9 111 67.6
Manes.13G150950 Manihot esculenta HOM05D001969 ORTHO05D009003 2.6e-18 95.9 76 55.3
FAN05G0495 Fragaria x ananassa HOM05D001969 ORTHO05D003463 3.4e-18 95.5 81 50.6
Aa31LG9G15650 Aethionema arabicum HOM05D001969 ORTHO05D009003 2.9e-17 92.4 134 37.3
SEGI_26592 Sequoiadendron giganteum HOM05D001969 ORTHO05D009003 3.7e-17 92.0 132 47.0
PSO384G2148 Papaver somniferum HOM05D001969 ORTHO05D009003 6.4e-17 91.3 119 54.6
Os07g0530300 Oryza sativa ssp. japonica HOM05D001969 ORTHO05D009003 8.3e-17 90.9 129 52.7
PSO339G1404 Papaver somniferum HOM05D001969 ORTHO05D009003 1.4e-16 90.1 121 53.7
Rhsim04G0065900 Rhododendron simsii HOM05D001969 ORTHO05D003463 1.6e-15 86.7 101 72.3
HPP92_010084 Vanilla planifolia HOM05D001969 ORTHO05D009003 3.5e-15 85.5 129 54.3
HPP92_010093 Vanilla planifolia HOM05D001969 ORTHO05D009003 3.5e-15 85.5 129 54.3
Manes.06G013500 Manihot esculenta HOM05D001969 ORTHO05D009003 4.6e-15 85.1 109 40.4
Pp3c6_17280 Physcomitrium patens HOM05D001969 ORTHO05D009003 1.0e-14 84.0 122 55.7
Cpa.g.sc17.168 Carica papaya HOM05D001969 ORTHO05D003463 1.3e-14 83.6 117 57.3
PSO017G7338 Papaver somniferum HOM05D001969 ORTHO05D009003 5.0e-14 81.6 131 51.9
Hma1.2p1_0832F.1_g225700 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 8.6e-14 80.9 94 72.3
AL3G54010 Arabidopsis lyrata HOM05D001969 ORTHO05D009003 2.5e-13 79.3 132 40.2
SMO351G0323 Selaginella moellendorffii HOM05D001969 ORTHO05D009003 5.6e-13 78.2 127 52.0
FAN02G3777 Fragaria x ananassa HOM05D001969 ORTHO05D009003 7.3e-13 77.8 96 59.4
MCO02G305 Micromonas commoda HOM05D001969 ORTHO05D009003 1.2e-12 77.0 124 50.8
Ah.07g207260 Amaranthus hybridus HOM05D001969 ORTHO05D003463 8.1e-12 74.3 127 47.2
BcaC07g41194 Brassica carinata HOM05D001969 ORTHO05D003463 1.5e-10 70.1 118 34.7
C08p42010 Brassica napus HOM05D001969 ORTHO05D003463 1.5e-10 70.1 118 34.7
BolC8t51763H Brassica oleracea HOM05D001969 ORTHO05D003463 1.5e-10 70.1 118 34.7
Zm00001eb414510 Zea mays HOM05D001969 ORTHO05D009003 1.5e-10 70.1 63 46.0
A09p58710 Brassica napus HOM05D001969 ORTHO05D003463 9.8e-10 67.4 118 33.1
BraA09t41257Z Brassica rapa HOM05D001969 ORTHO05D003463 9.8e-10 67.4 118 33.1
Thhalv10001991m.g Eutrema salsugineum HOM05D001969 ORTHO05D003463 9.8e-10 67.4 119 31.9
BcaB08g34941 Brassica carinata HOM05D001969 ORTHO05D003463 1.3e-09 67.0 118 33.1
PSO675G3991 Papaver somniferum HOM05D001969 ORTHO05D009003 3.5e-07 58.9 108 32.4
Hma1.2p1_0384F.1_g141150 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 5.1e-06 55.1 72 38.9


User provided reference genes

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