Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 0.0e+00 1861.3 936 100.0
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 0.0e+00 1439.9 970 77.5
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 0.0e+00 1413.3 968 75.9
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 0.0e+00 1389.4 970 74.7
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 0.0e+00 1387.5 933 76.5
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 0.0e+00 1384.4 968 73.8
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 0.0e+00 1382.1 970 73.9
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 0.0e+00 1364.7 968 73.3
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 0.0e+00 1347.0 966 72.7
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 0.0e+00 1302.7 958 71.9
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 0.0e+00 1292.3 970 69.7
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 0.0e+00 1292.3 970 69.7
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 0.0e+00 1279.2 943 72.2
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 0.0e+00 1081.2 974 60.2
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 1.6e-308 1062.8 1002 58.0
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 3.2e-306 1055.0 969 58.6
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 2.6e-303 1045.4 972 58.0
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 1.9e-290 1002.7 976 56.0
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 1.0e-288 996.9 952 56.6
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.4e-288 996.5 976 55.6
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 4.0e-288 995.0 980 55.3
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 9.8e-287 990.3 927 56.9
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 3.7e-286 988.4 982 55.7
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 4.1e-285 984.9 983 55.2
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 5.0e-283 978.0 978 55.1
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 1.6e-281 973.0 973 55.5
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 6.2e-281 971.1 963 55.9
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 3.4e-279 965.3 977 54.4
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 6.4e-278 961.1 971 54.6
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 3.0e-275 952.2 971 54.8
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 1.5e-274 949.9 977 53.9
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 4.0e-272 941.8 893 56.4
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 5.2e-272 941.4 977 53.4
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 6.8e-272 941.0 1009 52.7
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 6.8e-272 941.0 977 53.5
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 1.5e-271 939.9 972 53.9
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 4.4e-271 938.3 978 53.1
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 5.8e-271 937.9 953 55.1
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 9.2e-269 930.6 936 54.0
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 2.1e-268 929.5 985 52.3
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 1.3e-267 926.8 985 52.7
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 7.3e-266 921.0 976 52.5
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 8.1e-265 917.5 979 53.7
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 1.8e-264 916.4 962 53.1
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 4.0e-264 915.2 928 54.2
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 8.9e-264 914.1 910 55.7
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 1.6e-260 903.3 966 52.1
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 6.6e-259 897.9 975 51.1
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 1.5e-258 896.7 980 51.1
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 1.5e-258 896.7 929 54.8
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 5.6e-258 894.8 976 51.4
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 1.8e-256 889.8 980 51.9
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 1.5e-255 886.7 980 51.3
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 1.3e-254 883.6 966 50.7
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 2.4e-253 879.4 970 51.0
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 4.2e-253 878.6 978 50.4
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 6.0e-252 874.8 935 51.3
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 3.9e-251 872.1 996 49.9
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 3.3e-250 869.0 972 50.6
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.3e-249 867.1 972 50.3
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 2.4e-248 862.8 973 50.3
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 4.0e-248 862.1 906 52.2
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 9.0e-248 860.9 941 51.6
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 1.2e-247 860.5 976 50.6
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 2.0e-247 859.8 978 50.5
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 9.9e-247 857.4 830 56.1
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 2.4e-245 852.8 950 49.4
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 9.3e-245 850.9 924 50.1
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 2.1e-244 849.7 961 50.4
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 4.6e-244 848.6 955 48.6
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 4.6e-244 848.6 997 49.7
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 1.8e-243 846.7 943 51.2
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 2.3e-243 846.3 970 50.8
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 6.7e-243 844.7 951 49.1
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 6.7e-243 844.7 939 51.3
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 1.9e-242 843.2 949 49.5
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 1.1e-240 837.4 955 49.0
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 1.8e-240 836.6 962 48.1
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 7.6e-239 831.2 942 48.7
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 4.2e-237 825.5 961 50.5
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 4.6e-236 822.0 961 47.8
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 8.7e-235 817.8 820 53.8
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 1.1e-234 817.4 961 48.7
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 7.4e-234 814.7 684 61.7
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 3.4e-231 805.8 683 59.4
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 4.5e-231 805.4 924 49.4
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 1.0e-230 804.3 668 61.5
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 4.6e-228 795.4 939 50.2
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 1.6e-225 786.9 922 47.5
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 6.3e-225 785.0 919 47.9
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 1.1e-224 784.3 966 48.3
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 1.7e-222 776.9 941 46.7
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 2.9e-222 776.2 940 46.9
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 2.1e-220 770.0 961 47.3
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 7.9e-220 768.1 1005 44.1
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 3.0e-219 766.1 975 47.2
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 6.9e-216 755.0 917 46.8
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 3.4e-215 752.7 694 55.3
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 6.7e-211 738.4 968 45.2
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 1.2e-204 717.6 861 47.4
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 2.7e-204 716.5 989 44.7
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 1.8e-203 713.8 621 61.0
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 7.5e-202 708.4 779 50.7
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 1.2e-199 701.0 658 55.2
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 1.8e-192 677.2 715 50.1
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 3.1e-192 676.4 949 42.8
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 7.7e-191 671.8 725 50.3
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 2.5e-189 666.8 896 44.5
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 3.3e-181 639.8 458 70.1
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 5.2e-171 605.9 721 48.0
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 5.2e-171 605.9 654 50.0
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 3.4e-170 603.2 726 45.2
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 1.3e-166 591.3 451 65.9
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 1.3e-153 548.1 656 46.8
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 6.4e-153 545.8 656 47.3
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 1.5e-149 534.6 610 45.9
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 1.5e-146 524.6 616 47.6
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 1.3e-145 521.5 699 45.6
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 2.1e-143 514.2 485 52.6
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 3.1e-139 500.4 671 45.6
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 3.7e-124 450.3 724 39.8
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 1.7e-121 441.4 679 40.1
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 8.5e-113 412.5 744 34.7
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 7.4e-109 399.4 517 46.6
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 2.2e-100 371.3 281 67.3
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 5.3e-99 366.7 283 65.7
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 1.6e-95 355.1 492 42.9
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 6.7e-94 349.7 533 42.0
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 4.0e-86 323.9 428 43.7
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.2e-79 302.4 220 69.5
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 1.0e-73 282.7 220 65.0
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 8.9e-70 269.6 236 58.9
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 8.6e-65 253.1 175 70.3
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 3.4e-61 241.1 243 55.6
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 3.9e-57 227.6 247 46.2
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.6e-55 222.2 172 67.4
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 5.2e-54 217.2 148 70.9
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 9.8e-53 213.0 132 78.8
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 1.3e-49 202.6 276 45.3
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 1.1e-46 193.0 174 56.3
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 2.7e-42 178.3 114 72.8
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 1.3e-36 159.5 520 28.5
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 7.1e-35 153.7 327 33.6
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 2.2e-28 132.1 80 78.8
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 8.7e-25 120.2 199 41.7
MCO16G596 Micromonas commoda HOM05D004501 ORTHO05D004944 2.2e-20 105.5 565 24.2
Cpa.g.sc776.3 Carica papaya HOM05D004501 ORTHO05D004944 4.2e-19 101.3 300 31.3
BcaC02g12114 Brassica carinata HOM05D004501 ORTHO05D023925 2.8e-15 88.6 345 27.5
Sed0019349 Sechium edule HOM05D004501 ORTHO05D004944 9.0e-14 83.6 93 43.0
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 3.4e-13 81.6 42 85.7
Cre16.g683437 Chlamydomonas reinhardtii HOM05D004501 ORTHO05D004944 1.2e-10 73.2 553 23.1
Zm00001eb333660 Zea mays HOM05D000230 ORTHO05D010966 1.1e-08 66.6 47 66.0


User provided reference genes

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