Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0005518 Lotus japonicus HOM05D007280 ORTHO05D009108 1.4e-233 813.1 411 100.0
Phvul.003G013000 Phaseolus vulgaris HOM05D007280 ORTHO05D009108 2.8e-157 559.7 417 69.1
Ca_12458_v3 Cicer arietinum L. HOM05D007280 ORTHO05D009108 1.8e-156 557.0 417 69.3
Medtr1g033840 Medicago truncatula HOM05D007280 ORTHO05D009108 5.8e-155 552.0 420 69.8
VMungo1215G2162 Vigna mungo HOM05D007280 ORTHO05D009108 5.8e-155 552.0 414 68.8
TPR.G35854 Trifolium pratense HOM05D007280 ORTHO05D009108 2.1e-152 543.5 421 68.9
Psat6g095680 Pisum sativum HOM05D007280 ORTHO05D009108 4.6e-152 542.3 421 68.4
Lalb_Chr17g0338341 Lupinus albus HOM05D007280 ORTHO05D009108 5.3e-148 528.9 410 68.5
Glyma.20G010600 Glycine max HOM05D007280 ORTHO05D009108 4.6e-144 515.8 398 68.8
Glyma.07G177100 Glycine max HOM05D007280 ORTHO05D009108 4.8e-117 426.0 323 69.0
Thecc.09G239200 Theobroma cacao HOM05D007280 ORTHO05D009108 2.1e-112 410.6 416 54.6
Haze_01575 Corylus avellana HOM05D007280 ORTHO05D009108 8.8e-111 405.2 418 54.1
Cpa.g.sc2.97 Carica papaya HOM05D007280 ORTHO05D009108 4.1e-108 396.4 418 51.4
Hma1.2p1_0319F.1_g123900 Hydrangea macrophylla HOM05D007280 ORTHO05D009108 2.0e-107 394.0 418 50.7
Nn4g24834 Nelumbo nucifera HOM05D007280 ORTHO05D009108 5.9e-107 392.5 416 51.9
Cfa015100 Carpinus fangiana HOM05D007280 ORTHO05D009108 7.7e-107 392.1 410 53.4
Prupe.1G342100 Prunus persica HOM05D007280 ORTHO05D009108 7.2e-105 385.6 422 50.5
Sabra08G0108200 Salix brachista HOM05D007280 ORTHO05D009108 6.1e-104 382.5 417 51.3
Lj3P855T51 Lonicera japonica HOM05D007280 ORTHO05D009108 1.8e-103 380.9 375 52.0
Potri.010G098700 Populus trichocarpa HOM05D007280 ORTHO05D009108 4.0e-103 379.8 419 50.1
Ciclev10004581m.g Citrus clementina HOM05D007280 ORTHO05D009108 2.4e-100 370.5 420 50.0
Cc11_g02870 Coffea canephora HOM05D007280 ORTHO05D009108 1.1e-97 361.7 419 47.7
MD13G1010900 Malus domestica HOM05D007280 ORTHO05D009108 5.5e-97 359.4 411 47.7
DCAR_023520 Daucus carota HOM05D007280 ORTHO05D009108 6.1e-96 355.9 425 47.1
Peaxi162Scf00329g00097 Petunia axillaris HOM05D007280 ORTHO05D009108 1.2e-94 351.7 430 44.9
Solyc04g008570.4 Solanum lycopersicum HOM05D007280 ORTHO05D009108 4.4e-94 349.7 428 45.3
Sopen04g003730 Solanum pennellii HOM05D007280 ORTHO05D009108 5.7e-94 349.4 428 45.1
FAN12G0470 Fragaria x ananassa HOM05D007280 ORTHO05D009108 9.8e-94 348.6 422 47.2
PGSC0003DMG400031369 Solanum tuberosum HOM05D007280 ORTHO05D009108 1.7e-93 347.8 431 45.2
Rhsim04G0168900 Rhododendron simsii HOM05D007280 ORTHO05D009108 3.7e-93 346.7 418 48.3
HanXRQChr16g0526501 Helianthus annuus HOM05D007280 ORTHO05D009108 8.3e-93 345.5 428 45.1
FvH4_4g36140 Fragaria vesca HOM05D007280 ORTHO05D009108 3.2e-92 343.6 422 46.4
TWI74G1184 Tripterygium wilfordii HOM05D007280 ORTHO05D009108 3.2e-92 343.6 407 46.7
CSS0013384 Camellia sinensis var. sinensis HOM05D007280 ORTHO05D009108 2.0e-91 340.9 431 45.7
FAN07G2371 Fragaria x ananassa HOM05D007280 ORTHO05D009108 7.8e-91 339.0 418 47.6
MD16G1008400 Malus domestica HOM05D007280 ORTHO05D009108 6.6e-90 335.9 416 46.4
Duzib168G0083 Durio zibethinus HOM05D007280 ORTHO05D009108 9.5e-89 332.0 415 47.5
Gohir.D06G095050 Gossypium hirsutum HOM05D007280 ORTHO05D009108 1.2e-88 331.6 423 47.0
Sabra08G0108600 Salix brachista HOM05D007280 ORTHO05D009108 2.8e-88 330.5 418 46.9
Gohir.D09G108900 Gossypium hirsutum HOM05D007280 ORTHO05D009108 8.0e-88 328.9 423 46.8
PGR044G2110 Punica granatum HOM05D007280 ORTHO05D009108 1.4e-87 328.2 433 44.6
Eucgr.B02618 Eucalyptus grandis HOM05D007280 ORTHO05D009108 2.3e-87 327.4 365 47.4
CAN.G458.1 Capsicum annuum HOM05D007280 ORTHO05D009108 1.5e-86 324.7 437 42.8
Gorai.006G126500 Gossypium raimondii HOM05D007280 ORTHO05D009108 2.0e-86 324.3 423 46.1
THA.LOC104819105 Tarenaya hassleriana HOM05D007280 ORTHO05D009108 7.5e-86 322.4 400 43.8
Sabra10G0071200 Salix brachista HOM05D007280 ORTHO05D009108 8.3e-85 318.9 419 45.1
MSTRG.17728 Avicennia marina HOM05D007280 ORTHO05D009108 2.4e-84 317.4 428 44.6
Gohir.A09G112200 Gossypium hirsutum HOM05D007280 ORTHO05D009108 1.2e-83 315.1 357 49.0
Manes.17G093400 Manihot esculenta HOM05D007280 ORTHO05D009108 2.3e-82 310.8 328 51.5
Lsat_1_v5_gn_3_27640 Lactuca sativa HOM05D007280 ORTHO05D009108 6.2e-80 302.8 362 44.2
Ah.13g070140 Amaranthus hybridus HOM05D007280 ORTHO05D009108 3.1e-79 300.4 353 45.6
QL03p041451 Quercus lobata HOM05D007280 ORTHO05D009108 3.1e-79 300.4 327 52.9
Aa31sc65G20 Aethionema arabicum HOM05D007280 ORTHO05D009108 5.2e-79 299.7 390 43.6
Thhalv10016019m.g Eutrema salsugineum HOM05D007280 ORTHO05D009108 9.8e-78 295.4 381 44.1
Sp6g30250 Schrenkiella parvula HOM05D007280 ORTHO05D009108 6.4e-77 292.7 384 43.5
GSVIVG01010259001 Vitis vinifera HOM05D007280 ORTHO05D009108 1.4e-76 291.6 324 48.8
Potri.008G142900 Populus trichocarpa HOM05D007280 ORTHO05D009108 1.9e-76 291.2 418 43.3
ECA246G2688 Erigeron canadensis HOM05D007280 ORTHO05D009108 7.1e-76 289.3 328 46.0
AT5G13770 Arabidopsis thaliana HOM05D007280 ORTHO05D009108 3.9e-74 283.5 377 43.2
ClCG01G006970 Citrullus lanatus HOM05D007280 ORTHO05D009108 6.6e-74 282.7 327 48.6
Sed0008466 Sechium edule HOM05D007280 ORTHO05D009108 6.6e-74 282.7 322 48.8
C02p06420 Brassica napus HOM05D007280 ORTHO05D009108 1.1e-73 282.0 331 46.2
BolC2t06588H Brassica oleracea HOM05D007280 ORTHO05D009108 1.1e-73 282.0 331 46.2
Carub.0006s1195 Capsella rubella HOM05D007280 ORTHO05D009108 1.5e-73 281.6 337 44.2
AL6G24390 Arabidopsis lyrata HOM05D007280 ORTHO05D009108 1.6e-72 278.1 377 42.2
TAR622G0173 Trochodendron aralioides HOM05D007280 ORTHO05D009108 3.6e-72 276.9 326 49.1
BraA02t05191Z Brassica rapa HOM05D007280 ORTHO05D009108 1.4e-71 275.0 397 41.1
A02p02170 Brassica napus HOM05D007280 ORTHO05D009108 4.0e-71 273.5 397 40.8
ATR0705G126 Amborella trichopoda HOM05D007280 ORTHO05D009108 3.4e-70 270.4 373 41.3
CsaV3_5G017390 Cucumis sativus L. HOM05D007280 ORTHO05D009108 3.4e-70 270.4 327 48.6
MELO3C027064.2 Cucumis melo HOM05D007280 ORTHO05D009108 7.5e-70 269.2 280 50.4
BcaNung04186 Brassica carinata HOM05D007280 ORTHO05D009108 4.9e-69 266.5 326 43.9
SalBow3G1417 Salvia bowleyana HOM05D007280 ORTHO05D009108 1.1e-68 265.4 385 39.5
AUR62019383 Chenopodium quinoa HOM05D007280 ORTHO05D009108 1.5e-65 255.0 338 41.1
CDE08G0845 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 1.8e-63 248.1 347 42.9
AUR62006107 Chenopodium quinoa HOM05D007280 ORTHO05D009108 4.0e-63 246.9 336 40.2
Os04g0583101 Oryza sativa ssp. japonica HOM05D007280 ORTHO05D009108 4.0e-63 246.9 323 38.7
Migut.N02514 Erythranthe guttata HOM05D007280 ORTHO05D009108 1.2e-62 245.4 428 38.1
PSO782G1316 Papaver somniferum HOM05D007280 ORTHO05D009108 2.2e-61 241.1 326 43.9
CiPaw.05G161600 Carya illinoinensis HOM05D007280 ORTHO05D009108 3.2e-60 237.3 335 44.2
Zm00001eb072910 Zea mays HOM05D007280 ORTHO05D009108 2.1e-59 234.6 323 39.3
PSO063G1027 Papaver somniferum HOM05D007280 ORTHO05D009108 2.7e-59 234.2 328 43.3
Dinv17118 Davidia involucrata HOM05D007280 ORTHO05D009108 7.8e-59 232.6 201 56.2
GSVIVG01032336001 Vitis vinifera HOM05D007280 ORTHO05D009108 3.6e-56 223.8 234 51.7
Lsat_1_v5_gn_4_26101 Lactuca sativa HOM05D007280 ORTHO05D009108 4.8e-56 223.4 336 40.5
COL.COLO4_36459 Corchorus olitorius HOM05D007280 ORTHO05D009108 3.1e-55 220.7 331 44.1
Ah.07g205740 Amaranthus hybridus HOM05D007280 ORTHO05D009108 1.7e-53 214.9 318 37.7
CDE04G3512 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 5.4e-52 209.9 349 39.3
MBI03_g37599_MAGBIO Magnolia biondii HOM05D007280 ORTHO05D009108 5.4e-52 209.9 378 34.7
Nitab4.5_0003882g0050 Nicotiana tabacum HOM05D007280 ORTHO05D009108 4.6e-51 206.8 194 56.7
Oeu006355.1 Olea europaea HOM05D007280 ORTHO05D009108 8.7e-50 202.6 275 41.1
Nitab4.5_0000129g0410 Nicotiana tabacum HOM05D007280 ORTHO05D009108 1.1e-49 202.2 194 55.2
Aqoxy3G04194 Aquilegia oxysepala HOM05D007280 ORTHO05D009108 7.3e-49 199.5 321 40.2
Sc14g0006690 Simmondsia chinensis HOM05D007280 ORTHO05D009108 1.3e-45 188.7 231 45.0
Ciclev10006779m.g Citrus clementina HOM05D007280 ORTHO05D009108 6.4e-45 186.4 194 54.1
QL11p025101 Quercus lobata HOM05D007280 ORTHO05D009108 1.9e-44 184.9 195 51.3
RcHm_v2.0_Chr4g0445881 Rosa chinensis HOM05D007280 ORTHO05D009108 3.2e-44 184.1 427 34.0
CARHR199670 Cardamine hirsuta HOM05D007280 ORTHO05D009108 2.7e-43 181.0 288 37.5
ECA234G4111 Erigeron canadensis HOM05D007280 ORTHO05D009108 9.0e-31 139.4 120 58.3
QL11p025168 Quercus lobata HOM05D007280 ORTHO05D009108 3.8e-29 134.0 114 57.9
Atru.chr11.1056 Acer truncatum HOM05D007280 ORTHO05D009108 1.6e-19 102.1 67 74.6
MBI03_g47433_MAGBIO Magnolia biondii HOM05D007280 ORTHO05D009108 2.8e-08 64.7 41 68.3
CANSAT01G2277 Cannabis sativa HOM05D007486 ORTHO05D003673 3.7e-08 64.3 356 22.5
CANSAT01G2464 Cannabis sativa HOM05D007486 ORTHO05D003673 1.1e-07 62.8 357 21.8
PSO017G6569 Papaver somniferum HOM05D007486 ORTHO05D003673 1.5e-06 58.9 173 26.0
Cpa.g.sc8.109 Carica papaya HOM05D007486 ORTHO05D003673 2.0e-06 58.5 275 23.6
A07p07090 Brassica napus HOM05D007486 ORTHO05D003673 3.5e-06 57.8 180 25.6


User provided reference genes

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