Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0005470 Lotus japonicus HOM05D003831 ORTHO05D004440 1.1e-36 156.0 72 100.0
Lj2g0012017 Lotus japonicus HOM05D003831 ORTHO05D004440 1.1e-36 156.0 72 100.0
Lj2g0021234 Lotus japonicus HOM05D003831 ORTHO05D004440 1.1e-36 156.0 72 100.0
CsaV3_2G032780 Cucumis sativus L. HOM05D003831 ORTHO05D004440 2.7e-35 151.4 72 97.2
arahy.Tifrunner.gnm1.ann1.5T40TZ Arachis hypogaea HOM05D003831 ORTHO05D004440 4.6e-35 150.6 72 97.2
arahy.Tifrunner.gnm1.ann1.TXPA6B Arachis hypogaea HOM05D003831 ORTHO05D004440 4.6e-35 150.6 72 97.2
arahy.Tifrunner.gnm1.ann1.Y183F3 Arachis hypogaea HOM05D003831 ORTHO05D004440 4.6e-35 150.6 72 97.2
AUR62001616 Chenopodium quinoa HOM05D003831 ORTHO05D004440 4.6e-35 150.6 72 95.8
Glyma.01G029400 Glycine max HOM05D003831 ORTHO05D004440 4.6e-35 150.6 72 97.2
Glyma.02G035900 Glycine max HOM05D003831 ORTHO05D004440 4.6e-35 150.6 72 97.2
HanXRQChr04g0108041 Helianthus annuus HOM05D003831 ORTHO05D004440 6.0e-35 150.2 72 95.8
Lsat_1_v5_gn_8_89360 Lactuca sativa HOM05D003831 ORTHO05D004440 6.0e-35 150.2 72 95.8
Aa31LG2G9120 Aethionema arabicum HOM05D003831 ORTHO05D004440 1.3e-34 149.1 72 94.4
ClCG08G017910 Citrullus lanatus HOM05D003831 ORTHO05D004440 1.3e-34 149.1 72 94.4
HanXRQChr14g0445611 Helianthus annuus HOM05D003831 ORTHO05D004440 1.3e-34 149.1 72 94.4
Glyma.04G094900 Glycine max HOM05D003831 ORTHO05D004440 2.3e-34 148.3 72 94.4
Glyma.06G096400 Glycine max HOM05D003831 ORTHO05D004440 2.3e-34 148.3 72 94.4
PGR102G1072 Punica granatum HOM05D003831 ORTHO05D004440 2.3e-34 148.3 72 94.4
PGR119G1391 Punica granatum HOM05D003831 ORTHO05D004440 2.3e-34 148.3 72 94.4
THA.LOC104819397 Tarenaya hassleriana HOM05D003831 ORTHO05D004440 2.3e-34 148.3 72 94.4
Sed0002295 Sechium edule HOM05D003831 ORTHO05D004440 3.0e-34 147.9 72 94.4
Duzib268G1541 Durio zibethinus HOM05D003831 ORTHO05D004440 3.9e-34 147.5 72 93.1
Gohir.A03G138000 Gossypium hirsutum HOM05D003831 ORTHO05D004440 3.9e-34 147.5 72 93.1
Gohir.A12G143800 Gossypium hirsutum HOM05D003831 ORTHO05D004440 3.9e-34 147.5 72 93.1
Gohir.D02G161000 Gossypium hirsutum HOM05D003831 ORTHO05D004440 3.9e-34 147.5 72 93.1
Gohir.D12G148500 Gossypium hirsutum HOM05D003831 ORTHO05D004440 3.9e-34 147.5 72 93.1
Gorai.005G181100 Gossypium raimondii HOM05D003831 ORTHO05D004440 3.9e-34 147.5 72 93.1
Gorai.008G159800 Gossypium raimondii HOM05D003831 ORTHO05D004440 3.9e-34 147.5 72 93.1
Phvul.009G036800 Phaseolus vulgaris HOM05D003831 ORTHO05D004440 3.9e-34 147.5 72 94.4
Thecc.09G367000 Theobroma cacao HOM05D003831 ORTHO05D004440 3.9e-34 147.5 72 93.1
GSVIVG01013776001 Vitis vinifera HOM05D003831 ORTHO05D004440 3.9e-34 147.5 72 93.1
Cpa.g.sc12.279 Carica papaya HOM05D003831 ORTHO05D004440 5.1e-34 147.1 72 93.1
FvH4_4g32930 Fragaria vesca HOM05D003831 ORTHO05D004440 5.1e-34 147.1 72 93.1
FAN09G4060 Fragaria x ananassa HOM05D003831 ORTHO05D004440 5.1e-34 147.1 72 93.1
FAN12G2747 Fragaria x ananassa HOM05D003831 ORTHO05D004440 5.1e-34 147.1 72 93.1
FAN17G2711 Fragaria x ananassa HOM05D003831 ORTHO05D004440 5.1e-34 147.1 72 93.1
FAN22G0891 Fragaria x ananassa HOM05D003831 ORTHO05D004440 5.1e-34 147.1 72 93.1
MD05G1050000 Malus domestica HOM05D003831 ORTHO05D004440 5.1e-34 147.1 72 93.1
MD10G1057300 Malus domestica HOM05D003831 ORTHO05D004440 5.1e-34 147.1 72 93.1
THA.LOC104809603 Tarenaya hassleriana HOM05D003831 ORTHO05D004440 5.1e-34 147.1 72 93.1
TWI18G0137 Tripterygium wilfordii HOM05D003831 ORTHO05D004440 5.1e-34 147.1 72 93.1
CANSAT01G0447 Cannabis sativa HOM05D003831 ORTHO05D004440 6.7e-34 146.7 72 93.1
CANSAT01G0707 Cannabis sativa HOM05D003831 ORTHO05D004440 6.7e-34 146.7 72 93.1
CiPaw.05G186000 Carya illinoinensis HOM05D003831 ORTHO05D004440 6.7e-34 146.7 72 93.1
CiPaw.06G070400 Carya illinoinensis HOM05D003831 ORTHO05D004440 6.7e-34 146.7 72 93.1
ECA236G1103 Erigeron canadensis HOM05D003831 ORTHO05D004440 6.7e-34 146.7 72 93.1
ATR0661G047 Amborella trichopoda HOM05D003831 ORTHO05D004440 8.7e-34 146.4 72 91.7
ATR0763G101 Amborella trichopoda HOM05D003831 ORTHO05D004440 8.7e-34 146.4 72 91.7
Lalb_Chr05g0228561 Lupinus albus HOM05D003831 ORTHO05D004440 8.7e-34 146.4 72 93.1
RcHm_v2.0_Chr5g0051151 Rosa chinensis HOM05D003831 ORTHO05D004440 8.7e-34 146.4 72 93.1
Haze_22255 Corylus avellana HOM05D003831 ORTHO05D004440 1.1e-33 146.0 72 91.7
AagrBONN_evm.TU.Sc2ySwM_368.1682 Anthoceros agrestis HOM05D003831 ORTHO05D004440 1.5e-33 145.6 71 91.5
Eucgr.C02278 Eucalyptus grandis HOM05D003831 ORTHO05D004440 1.5e-33 145.6 72 91.7
Prupe.1G250300 Prunus persica HOM05D003831 ORTHO05D004440 1.5e-33 145.6 72 91.7
BcaB04g20364 Brassica carinata HOM05D003831 ORTHO05D004440 1.9e-33 145.2 72 90.3
CSS0003899 Camellia sinensis var. sinensis HOM05D003831 ORTHO05D004440 2.5e-33 144.8 72 91.7
Cc05_g00640 Coffea canephora HOM05D003831 ORTHO05D004440 2.5e-33 144.8 72 91.7
Dinv12651 Davidia involucrata HOM05D003831 ORTHO05D004440 2.5e-33 144.8 72 91.7
Dinv19174 Davidia involucrata HOM05D003831 ORTHO05D004440 2.5e-33 144.8 72 91.7
Manes.12G047300 Manihot esculenta HOM05D003831 ORTHO05D004440 2.5e-33 144.8 72 91.7
Manes.13G049300 Manihot esculenta HOM05D003831 ORTHO05D004440 2.5e-33 144.8 72 91.7
Nn2g14078 Nelumbo nucifera HOM05D003831 ORTHO05D004440 2.5e-33 144.8 72 90.3
Nn4g22720 Nelumbo nucifera HOM05D003831 ORTHO05D004440 2.5e-33 144.8 72 90.3
Potri.003G102900 Populus trichocarpa HOM05D003831 ORTHO05D004440 2.5e-33 144.8 72 91.7
Potri.006G136300 Populus trichocarpa HOM05D003831 ORTHO05D004440 2.5e-33 144.8 72 91.7
DCAR_018638 Daucus carota HOM05D003831 ORTHO05D004440 3.3e-33 144.4 72 91.7
Sp2g02850 Schrenkiella parvula HOM05D003831 ORTHO05D004440 3.3e-33 144.4 72 88.9
Thhalv10023792m.g Eutrema salsugineum HOM05D003831 ORTHO05D004440 4.3e-33 144.1 72 88.9
Os11g0194800 Oryza sativa ssp. japonica HOM05D003831 ORTHO05D004440 4.3e-33 144.1 71 90.1
Os12g0180400 Oryza sativa ssp. japonica HOM05D003831 ORTHO05D004440 4.3e-33 144.1 71 90.1
PSO063G5975 Papaver somniferum HOM05D003831 ORTHO05D004440 4.3e-33 144.1 72 90.3
PSO832G3076 Papaver somniferum HOM05D003831 ORTHO05D004440 4.3e-33 144.1 72 90.3
QL03p059349 Quercus lobata HOM05D003831 ORTHO05D004440 4.3e-33 144.1 71 90.1
QL03p062311 Quercus lobata HOM05D003831 ORTHO05D004440 4.3e-33 144.1 71 90.1
QL03p062353 Quercus lobata HOM05D003831 ORTHO05D004440 4.3e-33 144.1 71 90.1
SEGI_11017 Sequoiadendron giganteum HOM05D003831 ORTHO05D004440 4.3e-33 144.1 72 90.3
BcaB03g13254 Brassica carinata HOM05D003831 ORTHO05D004440 5.6e-33 143.7 72 91.7
BcaC05g25023 Brassica carinata HOM05D003831 ORTHO05D004440 5.6e-33 143.7 72 91.7
BcaC07g38667 Brassica carinata HOM05D003831 ORTHO05D004440 5.6e-33 143.7 72 91.7
A06p08090 Brassica napus HOM05D003831 ORTHO05D004440 5.6e-33 143.7 72 91.7
A08p33450 Brassica napus HOM05D003831 ORTHO05D004440 5.6e-33 143.7 72 91.7
C05p09670 Brassica napus HOM05D003831 ORTHO05D004440 5.6e-33 143.7 72 91.7
BolC5t29708H Brassica oleracea HOM05D003831 ORTHO05D004440 5.6e-33 143.7 72 91.7
BolC8t49100H Brassica oleracea HOM05D003831 ORTHO05D004440 5.6e-33 143.7 72 91.7
BraA08t35261Z Brassica rapa HOM05D003831 ORTHO05D004440 5.6e-33 143.7 72 91.7
CAN.G874.5 Capsicum annuum HOM05D003831 ORTHO05D004440 5.6e-33 143.7 72 91.7
Hma1.2p1_0052F.1_g030070 Hydrangea macrophylla HOM05D003831 ORTHO05D004440 5.6e-33 143.7 69 92.8
Hma1.2p1_0226F.1_g095410 Hydrangea macrophylla HOM05D003831 ORTHO05D004440 5.6e-33 143.7 69 92.8
Lalb_Chr16g0382181 Lupinus albus HOM05D003831 ORTHO05D004440 5.6e-33 143.7 72 91.7
Peaxi162Scf00515g00317 Petunia axillaris HOM05D003831 ORTHO05D004440 5.6e-33 143.7 72 91.7
RcHm_v2.0_Chr4g0441961 Rosa chinensis HOM05D003831 ORTHO05D004440 5.6e-33 143.7 72 90.3
Sp1g10090 Schrenkiella parvula HOM05D003831 ORTHO05D004440 5.6e-33 143.7 72 91.7
vmacro14731 Vaccinium macrocarpon HOM05D003831 ORTHO05D004440 5.6e-33 143.7 69 94.2
Mapoly0054s0132 Marchantia polymorpha HOM05D003831 ORTHO05D004440 7.4e-33 143.3 71 88.7
AL1G22580 Arabidopsis lyrata HOM05D003831 ORTHO05D004440 9.6e-33 142.9 72 91.7
AL2G14420 Arabidopsis lyrata HOM05D003831 ORTHO05D004440 9.6e-33 142.9 72 87.5
AT1G11475 Arabidopsis thaliana HOM05D003831 ORTHO05D004440 9.6e-33 142.9 72 91.7
AT1G61700 Arabidopsis thaliana HOM05D003831 ORTHO05D004440 9.6e-33 142.9 72 87.5
Carub.0001s1108 Capsella rubella HOM05D003831 ORTHO05D004440 9.6e-33 142.9 72 91.7
Carub.0002s0336 Capsella rubella HOM05D003831 ORTHO05D004440 9.6e-33 142.9 72 87.5
Carub.0005s0891 Capsella rubella HOM05D003831 ORTHO05D004440 9.6e-33 142.9 72 91.7
Thhalv10009269m.g Eutrema salsugineum HOM05D003831 ORTHO05D004440 9.6e-33 142.9 72 91.7
Nitab4.5_0003020g0070 Nicotiana tabacum HOM05D003831 ORTHO05D004440 1.3e-32 142.5 69 92.8
Nitab4.5_0009005g0010 Nicotiana tabacum HOM05D003831 ORTHO05D004440 1.3e-32 142.5 69 92.8
Solyc06g083360.3 Solanum lycopersicum HOM05D003831 ORTHO05D004440 1.3e-32 142.5 72 90.3
Sopen06g034730 Solanum pennellii HOM05D003831 ORTHO05D004440 1.3e-32 142.5 72 90.3
CARHR011740 Cardamine hirsuta HOM05D003831 ORTHO05D004440 1.6e-32 142.1 72 91.7
CARHR255430 Cardamine hirsuta HOM05D003831 ORTHO05D004440 1.6e-32 142.1 72 91.7
Migut.C01236 Erythranthe guttata HOM05D003831 ORTHO05D004440 1.6e-32 142.1 72 91.7
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 1.6e-32 142.1 72 91.7
SalBow6G3444 Salvia bowleyana HOM05D003831 ORTHO05D004440 1.6e-32 142.1 72 91.7
Ca_03143_v3 Cicer arietinum L. HOM05D003831 ORTHO05D004440 2.1e-32 141.7 72 88.9
Psat2g105160 Pisum sativum HOM05D003831 ORTHO05D004440 2.1e-32 141.7 72 87.5
Zm00001eb366170 Zea mays HOM05D003831 ORTHO05D004440 2.1e-32 141.7 72 90.3
Zm00001eb408310 Zea mays HOM05D003831 ORTHO05D004440 2.8e-32 141.4 71 90.1
TPR.G30065 Trifolium pratense HOM05D003831 ORTHO05D004440 3.7e-32 141.0 72 87.5
Pp3c1_41980 Physcomitrium patens HOM05D003831 ORTHO05D004440 4.8e-32 140.6 71 87.3
CsaV3_5G031450 Cucumis sativus L. HOM05D003831 ORTHO05D004440 6.2e-32 140.2 69 89.9
Medtr5g034050 Medicago truncatula HOM05D003831 ORTHO05D004440 6.2e-32 140.2 72 86.1
Sc05g0001950 Simmondsia chinensis HOM05D003831 ORTHO05D004440 6.2e-32 140.2 84 81.0
Atru.chr11.2061 Acer truncatum HOM05D003831 ORTHO05D004440 1.1e-31 139.4 64 96.9
Haze_03725 Corylus avellana HOM05D003831 ORTHO05D004440 1.4e-31 139.0 64 98.4
ClCG05G025450 Citrullus lanatus HOM05D003831 ORTHO05D004440 1.8e-31 138.7 69 88.4
Lsat_1_v5_gn_9_15080 Lactuca sativa HOM05D003831 ORTHO05D004440 1.2e-30 136.0 63 96.8
SGA_v2.0_scaffold118G32461 Striga asiatica HOM05D002896 ORTHO05D003263 1.2e-30 136.0 63 96.8
MELO3C030275.2 Cucumis melo HOM05D003831 ORTHO05D004440 1.5e-30 135.6 63 96.8
Medtr4g075600 Medicago truncatula HOM05D003831 ORTHO05D004440 2.0e-30 135.2 64 93.8
Oeu023101.1 Olea europaea HOM05D003831 ORTHO05D004440 2.0e-30 135.2 64 93.8
Oeu030583.1 Olea europaea HOM05D003831 ORTHO05D004440 2.0e-30 135.2 64 93.8
Sabra03G0070100 Salix brachista HOM05D003831 ORTHO05D004440 2.0e-30 135.2 64 93.8
Actinidia39431 Actinidia chinensis HOM05D003831 ORTHO05D004440 2.6e-30 134.8 64 93.8
Aqoxy3G02890 Aquilegia oxysepala HOM05D003831 ORTHO05D004440 2.6e-30 134.8 63 95.2
Ciclev10033492m.g Citrus clementina HOM05D003831 ORTHO05D004440 2.6e-30 134.8 71 84.5
Sabra06G0106500 Salix brachista HOM05D003831 ORTHO05D004440 2.6e-30 134.8 63 95.2
TAR622G1207 Trochodendron aralioides HOM05D003831 ORTHO05D004440 2.6e-30 134.8 63 95.2
A01p30570 Brassica napus HOM05D003831 ORTHO05D004440 3.4e-30 134.4 64 92.2
C01p38960 Brassica napus HOM05D003831 ORTHO05D004440 3.4e-30 134.4 64 92.2
unitig_62.g23596 Utricularia gibba HOM05D003831 ORTHO05D004440 3.4e-30 134.4 64 95.3
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 4.5e-30 134.0 65 92.3
PGSC0003DMG400020165 Solanum tuberosum HOM05D003831 ORTHO05D004440 1.0e-29 132.9 64 92.2
BraA06t24008Z Brassica rapa HOM05D003831 ORTHO05D004440 2.2e-29 131.7 64 92.2
MCO02G327 Micromonas commoda HOM05D003831 ORTHO05D004440 2.2e-29 131.7 69 85.5
MBI10_g21415_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 2.9e-29 131.3 72 84.7
CDE06G1630 Ceratophyllum demersum HOM05D003831 ORTHO05D004440 3.8e-29 131.0 85 74.1
Cre13.g571650 Chlamydomonas reinhardtii HOM05D003831 ORTHO05D004440 4.9e-29 130.6 68 85.3
SMO358G0606 Selaginella moellendorffii HOM05D003831 ORTHO05D004440 4.9e-29 130.6 64 90.6
MBI16_g09348_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 6.5e-29 130.2 67 88.1
MBI16_g42769_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 6.5e-29 130.2 67 88.1
Medtr5g034040 Medicago truncatula HOM05D003831 ORTHO05D004440 8.4e-29 129.8 67 83.6
EL10Ac7g17904 Beta vulgaris HOM05D003831 ORTHO05D004440 1.4e-28 129.0 69 87.0
BolC1t03846H Brassica oleracea HOM05D003831 ORTHO05D004440 1.9e-28 128.6 104 62.5
PRCOL_00001275 Prasinoderma coloniale HOM05D003831 ORTHO05D004440 1.9e-28 128.6 69 82.6
Haze_26646 Corylus avellana HOM05D003831 ORTHO05D004440 5.5e-28 127.1 67 83.6
BraA01t03189Z Brassica rapa HOM05D003831 ORTHO05D004440 3.9e-26 120.9 124 52.4
Sed0002376 Sechium edule HOM05D003831 ORTHO05D004440 3.3e-25 117.9 72 79.2
SGA_v2.0_scaffold24G10536 Striga asiatica HOM05D003831 ORTHO05D004440 4.3e-25 117.5 57 93.0
MBI05_g22037_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 7.4e-25 116.7 60 88.3
MELO3C034128.2 Cucumis melo HOM05D003831 ORTHO05D004440 1.6e-24 115.5 59 86.4
ClCG08G007960 Citrullus lanatus HOM05D003831 ORTHO05D004440 2.8e-24 114.8 53 94.3
CBR_g48986 Chara braunii HOM05D003831 ORTHO05D004440 3.7e-24 114.4 58 87.9
MBI14_g22904_MAGBIO Magnolia biondii HOM05D000106 ORTHO05D002214 1.1e-23 112.8 57 89.5
Rhsim13G0097000 Rhododendron simsii HOM05D003831 ORTHO05D004440 4.0e-23 110.9 120 51.7
FAN21G2637 Fragaria x ananassa HOM05D003831 ORTHO05D004440 4.5e-22 107.5 53 88.7
FAN25G2861 Fragaria x ananassa HOM05D003831 ORTHO05D004440 4.5e-22 107.5 53 88.7
FAN16G2980 Fragaria x ananassa HOM05D003831 ORTHO05D004440 2.9e-21 104.8 53 84.9
arahy.Tifrunner.gnm1.ann1.Z8M7EL Arachis hypogaea HOM05D003831 ORTHO05D004440 6.5e-21 103.6 75 73.3
Lj2g0013677 Lotus japonicus HOM05D003831 ORTHO05D004440 3.3e-17 91.3 62 59.7
C04p07400 Brassica napus HOM05D003831 ORTHO05D004440 1.6e-16 89.0 42 90.5
BolC4t22361H Brassica oleracea HOM05D003831 ORTHO05D004440 1.6e-16 89.0 42 90.5
Sed0003810 Sechium edule HOM05D003831 ORTHO05D004440 3.7e-16 87.8 63 60.3
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 9.0e-15 83.2 88 52.3
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 9.0e-15 83.2 46 84.8
CSS0011229 Camellia sinensis var. sinensis HOM05D003831 ORTHO05D004440 7.2e-12 73.6 33 90.9
Lalb_Chr05g0216761 Lupinus albus HOM05D003831 ORTHO05D004440 1.6e-11 72.4 32 93.8
Ah.15g093500 Amaranthus hybridus HOM05D003831 ORTHO05D004440 3.6e-11 71.2 32 90.6
C09p50350 Brassica napus HOM05D003831 ORTHO05D004440 3.6e-11 71.2 32 90.6
Thecc.02G253800 Theobroma cacao HOM05D003831 ORTHO05D004440 3.6e-11 71.2 32 90.6
Actinidia30054 Actinidia chinensis HOM05D003831 ORTHO05D004440 4.6e-11 70.9 32 90.6
COL.COLO4_24205 Corchorus olitorius HOM05D003831 ORTHO05D004440 7.9e-11 70.1 52 67.3
SHI17512 Sapria himalayana HOM05D000002 ORTHO05D000001 1.0e-10 69.7 32 84.4
CSS0004603 Camellia sinensis var. sinensis HOM05D003831 ORTHO05D004440 2.3e-10 68.6 32 96.9
MBI10_g27999_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 2.3e-10 68.6 32 96.9
TPR.G17155 Trifolium pratense HOM05D003831 ORTHO05D004440 8.8e-10 66.6 40 75.0
arahy.Tifrunner.gnm1.ann1.GNJG0F Arachis hypogaea HOM05D003831 ORTHO05D004440 1.1e-09 66.2 32 90.6


User provided reference genes

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