Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0004695 Lotus japonicus HOM05D005949 ORTHO05D006945 8.2e-223 776.9 448 100.0
Glyma.19G052100 Glycine max HOM05D005949 ORTHO05D006945 6.8e-169 597.8 443 77.0
Glyma.05G115200 Glycine max HOM05D005949 ORTHO05D006945 8.9e-169 597.4 443 75.6
Phvul.004G060400 Phaseolus vulgaris HOM05D005949 ORTHO05D006945 2.4e-166 589.3 443 73.6
Ca_04380_v3 Cicer arietinum L. HOM05D005949 ORTHO05D006945 3.9e-164 582.0 446 74.0
VMungo0464G1442 Vigna mungo HOM05D005949 ORTHO05D006945 6.8e-161 571.2 436 75.9
Medtr6g021740 Medicago truncatula HOM05D005949 ORTHO05D006945 4.9e-159 565.1 445 71.7
TPR.G16864 Trifolium pratense HOM05D005949 ORTHO05D006945 8.3e-159 564.3 445 73.5
Lalb_Chr06g0174481 Lupinus albus HOM05D005949 ORTHO05D006945 1.2e-157 560.5 448 73.9
TPR.G8694 Trifolium pratense HOM05D005949 ORTHO05D006945 3.3e-155 552.4 445 72.8
arahy.Tifrunner.gnm1.ann1.4A4JE9 Arachis hypogaea HOM05D005949 ORTHO05D006945 4.6e-149 531.9 443 74.0
arahy.Tifrunner.gnm1.ann1.BK7H4N Arachis hypogaea HOM05D005949 ORTHO05D006945 2.1e-146 523.1 462 71.2
Manes.17G110300 Manihot esculenta HOM05D005949 ORTHO05D006945 1.3e-143 513.8 447 59.7
Cfa007328 Carpinus fangiana HOM05D005949 ORTHO05D006945 2.2e-143 513.1 445 64.9
GSVIVG01032367001 Vitis vinifera HOM05D005949 ORTHO05D006945 1.4e-142 510.4 426 68.5
MSTRG.15541 Avicennia marina HOM05D005949 ORTHO05D006945 2.7e-141 506.1 429 58.3
TAR374G0398 Trochodendron aralioides HOM05D005949 ORTHO05D006945 1.1e-139 500.7 446 57.2
Haze_14768 Corylus avellana HOM05D005949 ORTHO05D006945 7.3e-139 498.0 456 62.1
Nn2g12389 Nelumbo nucifera HOM05D005949 ORTHO05D006945 9.6e-139 497.7 443 65.0
QL02p073821 Quercus lobata HOM05D005949 ORTHO05D006945 9.6e-139 497.7 433 65.4
Nitab4.5_0006683g0100 Nicotiana tabacum HOM05D005949 ORTHO05D006945 3.6e-138 495.7 435 57.7
Nitab4.5_0001562g0070 Nicotiana tabacum HOM05D005949 ORTHO05D006945 3.1e-137 492.7 443 56.4
CiPaw.03G046600 Carya illinoinensis HOM05D005949 ORTHO05D006945 9.0e-137 491.1 423 71.2
RhsimUnG0006400 Rhododendron simsii HOM05D005949 ORTHO05D006945 5.8e-136 488.4 448 55.8
RhsimUnG0087200 Rhododendron simsii HOM05D005949 ORTHO05D006945 5.8e-136 488.4 448 55.8
CSS0029670 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 7.6e-136 488.0 423 57.4
Sed0011104 Sechium edule HOM05D005949 ORTHO05D006945 7.6e-136 488.0 444 67.3
CAN.G1235.24 Capsicum annuum HOM05D005949 ORTHO05D006945 9.9e-136 487.6 449 55.9
ClCG10G013730 Citrullus lanatus HOM05D005949 ORTHO05D006945 2.9e-135 486.1 447 64.2
Migut.K01417 Erythranthe guttata HOM05D005949 ORTHO05D006945 6.4e-135 485.0 444 64.9
Ciclev10015245m.g Citrus clementina HOM05D005949 ORTHO05D006945 7.1e-134 481.5 441 57.4
SGA_v2.0_scaffold47G17523 Striga asiatica HOM05D005949 ORTHO05D006945 6.0e-133 478.4 445 55.7
Eucgr.J02262 Eucalyptus grandis HOM05D005949 ORTHO05D006945 2.3e-132 476.5 444 61.5
Aqoxy5G03678 Aquilegia oxysepala HOM05D005949 ORTHO05D006945 5.1e-132 475.3 433 56.4
CANSAT64G2213 Cannabis sativa HOM05D005949 ORTHO05D006945 1.1e-131 474.2 449 61.5
HanXRQChr15g0486811 Helianthus annuus HOM05D005949 ORTHO05D006945 1.1e-129 467.6 443 53.0
MD09G1021300 Malus domestica HOM05D005949 ORTHO05D006945 1.1e-129 467.6 450 66.7
MD17G1021300 Malus domestica HOM05D005949 ORTHO05D006945 5.3e-129 465.3 448 66.7
Gorai.011G094000 Gossypium raimondii HOM05D005949 ORTHO05D006945 9.0e-129 464.5 443 63.7
COL.COLO4_29188 Corchorus olitorius HOM05D005949 ORTHO05D006945 9.9e-128 461.1 431 60.8
Gohir.D10G085800 Gossypium hirsutum HOM05D005949 ORTHO05D006945 9.9e-128 461.1 444 63.7
ECA232G4961 Erigeron canadensis HOM05D005949 ORTHO05D006945 1.3e-127 460.7 446 52.2
Duzib264G1167 Durio zibethinus HOM05D005949 ORTHO05D006945 1.7e-127 460.3 428 56.1
PGSC0003DMG400018653 Solanum tuberosum HOM05D005949 ORTHO05D006945 2.2e-127 459.9 446 53.4
Lsat_1_v5_gn_4_184520 Lactuca sativa HOM05D005949 ORTHO05D006945 2.9e-127 459.5 432 53.9
RcHm_v2.0_Chr2g0173461 Rosa chinensis HOM05D005949 ORTHO05D006945 2.9e-127 459.5 419 69.9
Sopen01g054070 Solanum pennellii HOM05D005949 ORTHO05D006945 6.4e-127 458.4 435 53.8
Solyc01g112020.3 Solanum lycopersicum HOM05D005949 ORTHO05D006945 1.9e-126 456.8 435 54.0
Gohir.A10G101600 Gossypium hirsutum HOM05D005949 ORTHO05D006945 5.4e-126 455.3 443 62.8
FAN05G2654 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.2e-125 454.1 413 70.2
TWI12G1469 Tripterygium wilfordii HOM05D005949 ORTHO05D006945 1.3e-124 450.7 445 60.9
Thecc.04G021200 Theobroma cacao HOM05D005949 ORTHO05D006945 3.9e-124 449.1 448 59.6
FvH4_6g51990 Fragaria vesca HOM05D005949 ORTHO05D006945 6.7e-124 448.4 415 69.2
Cc09_g05780 Coffea canephora HOM05D005949 ORTHO05D006945 7.4e-123 444.9 444 64.0
FAN09G2334 Fragaria x ananassa HOM05D005949 ORTHO05D006945 7.4e-123 444.9 418 55.5
Lj7C602T3 Lonicera japonica HOM05D005949 ORTHO05D006945 7.4e-123 444.9 451 51.9
PSO063G1157 Papaver somniferum HOM05D005949 ORTHO05D006945 7.4e-123 444.9 450 52.4
FAN14G1023 Fragaria x ananassa HOM05D005949 ORTHO05D006945 9.6e-123 444.5 447 65.8
Prupe.3G295200 Prunus persica HOM05D005949 ORTHO05D006945 9.6e-123 444.5 448 65.0
PGR083G1217 Punica granatum HOM05D005949 ORTHO05D006945 1.3e-122 444.1 433 60.5
EL10Ac6g14123 Beta vulgaris HOM05D005949 ORTHO05D006945 2.1e-122 443.4 501 47.5
Peaxi162Scf00420g00016 Petunia axillaris HOM05D005949 ORTHO05D006945 4.8e-122 442.2 442 53.4
FAN02G3213 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.8e-121 440.3 415 68.4
PSO754G0010 Papaver somniferum HOM05D005949 ORTHO05D006945 2.6e-120 436.4 450 52.0
THA.LOC104819734 Tarenaya hassleriana HOM05D005949 ORTHO05D006945 5.8e-120 435.3 446 62.8
ATR0199G040 Amborella trichopoda HOM05D005949 ORTHO05D006945 7.1e-118 428.3 430 59.1
MELO3C026595.2 Cucumis melo HOM05D005949 ORTHO05D006945 3.9e-116 422.5 374 70.1
AT4G35850 Arabidopsis thaliana HOM05D005949 ORTHO05D006945 1.1e-115 421.0 444 58.3
Psat5g064960 Pisum sativum HOM05D005949 ORTHO05D006945 1.5e-115 420.6 274 77.0
CARHR244220 Cardamine hirsuta HOM05D005949 ORTHO05D006945 3.3e-115 419.5 444 59.9
Potri.001G341400 Populus trichocarpa HOM05D005949 ORTHO05D006945 4.3e-115 419.1 425 64.0
Sabra16G0221400 Salix brachista HOM05D005949 ORTHO05D006945 5.6e-115 418.7 418 65.1
Carub.0007s0438 Capsella rubella HOM05D005949 ORTHO05D006945 7.4e-115 418.3 444 58.6
AL7G15220 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 9.6e-115 417.9 444 57.9
CsaV3_3G042930 Cucumis sativus L. HOM05D000631 ORTHO05D000524 5.3e-113 412.1 390 66.7
Thhalv10025194m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 3.8e-111 406.0 419 58.5
AUR62043287 Chenopodium quinoa HOM05D005949 ORTHO05D006945 4.9e-111 405.6 419 52.0
BraA01t00268Z Brassica rapa HOM05D005949 ORTHO05D006945 8.4e-111 404.8 443 56.7
Aa31LG6G12800 Aethionema arabicum HOM05D005949 ORTHO05D006945 1.1e-110 404.4 416 60.6
C01p03190 Brassica napus HOM05D005949 ORTHO05D006945 1.1e-110 404.4 444 56.8
A01p02870 Brassica napus HOM05D005949 ORTHO05D006945 1.9e-110 403.7 414 58.5
BolC1t00304H Brassica oleracea HOM05D005949 ORTHO05D006945 1.9e-110 403.7 443 56.4
Atru.chr6.2442 Acer truncatum HOM05D005949 ORTHO05D006945 2.5e-110 403.3 354 60.7
BcaNung04881 Brassica carinata HOM05D005949 ORTHO05D006945 9.3e-110 401.4 444 57.7
BcaNung00787 Brassica carinata HOM05D005949 ORTHO05D006945 1.5e-107 394.0 428 48.8
SEGI_30195 Sequoiadendron giganteum HOM05D005949 ORTHO05D006945 2.8e-106 389.8 432 59.5
Ah.02g128260 Amaranthus hybridus HOM05D005949 ORTHO05D006945 4.8e-106 389.0 452 47.1
Os05g0145600 Oryza sativa ssp. japonica HOM05D005949 ORTHO05D006945 6.3e-106 388.7 438 60.0
Zm00001eb354320 Zea mays HOM05D005949 ORTHO05D006945 2.4e-105 386.7 412 62.6
HPP92_016937 Vanilla planifolia HOM05D005949 ORTHO05D006945 1.3e-103 380.9 445 46.5
DCAR_021740 Daucus carota HOM05D005949 ORTHO05D006945 7.9e-101 371.7 444 46.8
AUR62028447 Chenopodium quinoa HOM05D005949 ORTHO05D006945 1.4e-100 370.9 351 53.6
Sc09g0007150 Simmondsia chinensis HOM05D005949 ORTHO05D006945 3.9e-100 369.4 377 55.2
unitig_88.g27782 Utricularia gibba HOM05D005949 ORTHO05D006945 5.3e-97 359.0 272 61.4
Thhalv10023015m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 1.2e-93 347.8 415 54.7
Dinv25719 Davidia involucrata HOM05D005949 ORTHO05D006945 3.6e-93 346.3 337 56.7
Actinidia36133 Actinidia chinensis HOM05D005949 ORTHO05D006945 9.1e-89 331.6 317 67.8
SHI03792 Sapria himalayana HOM05D005949 ORTHO05D006945 9.1e-89 331.6 247 63.6
CSS0002019 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 2.1e-85 320.5 266 59.4
vmacro05885 Vaccinium macrocarpon HOM05D005949 ORTHO05D006945 1.4e-84 317.8 324 52.2
CDE04G3569 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 4.0e-68 263.1 330 52.4
Psat1g081720 Pisum sativum HOM05D005949 ORTHO05D006945 4.1e-65 253.1 254 57.5
Duzib147G0933 Durio zibethinus HOM05D005949 ORTHO05D006945 1.2e-64 251.5 326 44.2
Cpa.g.sc130.71 Carica papaya HOM05D005949 ORTHO05D006945 2.7e-64 250.4 270 64.1
SMO201G0168 Selaginella moellendorffii HOM05D005949 ORTHO05D006945 5.4e-57 226.1 393 47.8
CSS0020931 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 7.8e-56 222.2 160 64.4
Pp3c1_21850 Physcomitrium patens HOM05D005949 ORTHO05D006945 6.8e-52 209.1 393 44.8
CBR_g20410 Chara braunii HOM05D005949 ORTHO05D006945 5.8e-51 206.1 394 42.6
Mapoly0062s0069 Marchantia polymorpha HOM05D005949 ORTHO05D006945 2.9e-50 203.8 398 39.2
CBR_g20407 Chara braunii HOM05D005949 ORTHO05D006945 1.4e-49 201.4 409 41.1
Pp3c14_7210 Physcomitrium patens HOM05D005949 ORTHO05D006945 8.6e-47 192.2 404 41.8
AagrBONN_evm.TU.Sc2ySwM_117.2156 Anthoceros agrestis HOM05D005949 ORTHO05D006945 9.5e-46 188.7 430 40.7
AL7G15200 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 1.2e-45 188.3 218 44.5
Psat1g081680 Pisum sativum HOM05D005949 ORTHO05D006945 7.3e-38 162.5 103 75.7
MBI10_g37260_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 2.8e-37 160.6 212 58.5
Sc07g0004380 Simmondsia chinensis HOM05D005949 ORTHO05D006945 1.2e-35 155.2 139 56.8
Actinidia36134 Actinidia chinensis HOM05D005949 ORTHO05D006945 4.4e-35 153.3 118 59.3
MBI10_g15883_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 8.3e-34 149.1 206 44.2
CAN.G370.99 Capsicum annuum HOM05D000140 ORTHO05D000087 1.0e-31 142.1 110 63.6
CAN.G479.6 Capsicum annuum HOM05D005949 ORTHO05D006945 1.7e-31 141.4 215 39.5
MD09G1021100 Malus domestica HOM05D005949 ORTHO05D006945 6.6e-31 139.4 111 59.5
Hma1.2p1_0818F.1_g223360 Hydrangea macrophylla HOM05D005949 ORTHO05D006945 2.4e-28 131.0 103 60.2
SHI03793 Sapria himalayana HOM05D005949 ORTHO05D006945 2.6e-27 127.5 82 70.7
Zm00001eb120940 Zea mays HOM05D005949 ORTHO05D006945 1.6e-24 118.2 122 49.2
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 1.0e-23 115.5 200 38.0
CAN.G1258.5 Capsicum annuum HOM05D005949 ORTHO05D006945 5.1e-23 113.2 88 61.4
Sp7g33630 Schrenkiella parvula HOM05D005949 ORTHO05D006945 5.1e-23 113.2 108 53.7
CAN.G15.16 Capsicum annuum HOM05D005949 ORTHO05D006945 1.1e-14 85.5 56 73.2
CDE04G3731 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 4.3e-14 83.6 60 63.3
Sc07g0004370 Simmondsia chinensis HOM05D005949 ORTHO05D006945 3.1e-12 77.4 66 57.6
CAN.G153.13 Capsicum annuum HOM05D001265 ORTHO05D006945 5.3e-12 76.6 54 64.8
CAN.G2149.1 Capsicum annuum HOM05D001265 ORTHO05D006945 2.4e-09 67.8 37 83.8
CAN.G1258.4 Capsicum annuum HOM05D005949 ORTHO05D006945 1.2e-08 65.5 37 81.1
MBI07_g20478_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001968 1.2e-08 65.5 49 65.3
CAN.G898.5 Capsicum annuum HOM05D005949 ORTHO05D006945 1.6e-08 65.1 37 81.1
Cpa.g.sc130.69 Carica papaya HOM05D005949 ORTHO05D006945 3.5e-08 63.9 54 53.7
CAN.G1086.1 Capsicum annuum HOM05D005949 ORTHO05D006945 3.0e-07 60.8 39 74.4


User provided reference genes

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