Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0004168 Lotus japonicus HOM05D006955 ORTHO05D008701 4.7e-118 427.9 227 100.0
TPR.G38250 Trifolium pratense HOM05D006955 ORTHO05D008701 2.7e-105 385.6 227 89.0
Ca_28012_v3 Cicer arietinum L. HOM05D006955 ORTHO05D008701 2.3e-104 382.5 227 88.1
Phvul.002G082400 Phaseolus vulgaris HOM05D006955 ORTHO05D008701 5.6e-103 377.9 227 86.8
Glyma.08G260400 Glycine max HOM05D006955 ORTHO05D008701 2.1e-102 375.9 227 87.2
arahy.Tifrunner.gnm1.ann1.0188KY Arachis hypogaea HOM05D006955 ORTHO05D008701 8.1e-102 374.0 225 88.0
arahy.Tifrunner.gnm1.ann1.5TE0FE Arachis hypogaea HOM05D006955 ORTHO05D008701 8.1e-102 374.0 225 88.0
Medtr5g055150 Medicago truncatula HOM05D006955 ORTHO05D008701 8.1e-102 374.0 227 86.8
arahy.Tifrunner.gnm1.ann1.FS5FM4 Arachis hypogaea HOM05D006955 ORTHO05D008701 1.1e-101 373.6 225 88.0
Psat2g093000 Pisum sativum HOM05D006955 ORTHO05D008701 8.9e-101 370.5 227 85.9
Lalb_Chr17g0342031 Lupinus albus HOM05D006955 ORTHO05D008701 5.8e-100 367.9 227 84.6
Glyma.01G083100 Glycine max HOM05D006955 ORTHO05D008701 3.5e-97 358.6 228 84.2
VMungo1215G2393 Vigna mungo HOM05D006955 ORTHO05D008701 3.0e-96 355.5 228 83.3
CANSAT56G1672 Cannabis sativa HOM05D006955 ORTHO05D008701 1.6e-94 349.7 226 80.5
Actinidia14871 Actinidia chinensis HOM05D006955 ORTHO05D008701 1.2e-92 343.6 227 79.3
TWI79G1443 Tripterygium wilfordii HOM05D006955 ORTHO05D008701 3.8e-91 338.6 227 77.5
RcHm_v2.0_Chr4g0435501 Rosa chinensis HOM05D006955 ORTHO05D008701 4.9e-91 338.2 225 76.9
Gohir.D13G071200 Gossypium hirsutum HOM05D006955 ORTHO05D008701 6.4e-91 337.8 227 77.5
Gorai.013G081500 Gossypium raimondii HOM05D006955 ORTHO05D008701 1.1e-90 337.0 227 77.5
Potri.008G118800 Populus trichocarpa HOM05D006955 ORTHO05D008701 1.1e-90 337.0 227 77.5
Gohir.A13G053700 Gossypium hirsutum HOM05D006955 ORTHO05D008701 1.4e-90 336.7 227 77.1
Actinidia16638 Actinidia chinensis HOM05D006955 ORTHO05D008701 3.2e-90 335.5 227 77.5
Sp1g11840 Schrenkiella parvula HOM05D006955 ORTHO05D008701 4.2e-90 335.1 227 74.9
Haze_17460 Corylus avellana HOM05D006955 ORTHO05D008701 1.6e-89 333.2 227 75.8
Sabra08G0090200 Salix brachista HOM05D006955 ORTHO05D008701 1.6e-89 333.2 227 75.8
Dinv21110 Davidia involucrata HOM05D006955 ORTHO05D008701 2.1e-89 332.8 227 77.1
Prupe.1G308500 Prunus persica HOM05D006955 ORTHO05D008701 6.0e-89 331.3 225 76.0
CSS0004457 Camellia sinensis var. sinensis HOM05D006955 ORTHO05D008701 7.8e-89 330.9 227 76.2
COL.COLO4_07900 Corchorus olitorius HOM05D006955 ORTHO05D008701 7.8e-89 330.9 227 77.1
Manes.14G100100 Manihot esculenta HOM05D006955 ORTHO05D008701 7.8e-89 330.9 218 79.8
Lj3C1017T15 Lonicera japonica HOM05D006955 ORTHO05D008701 1.0e-88 330.5 227 76.2
Nn3g17799 Nelumbo nucifera HOM05D006955 ORTHO05D008701 3.0e-88 328.9 227 75.8
THA.LOC104805251 Tarenaya hassleriana HOM05D006955 ORTHO05D008701 1.5e-87 326.6 227 74.4
CsaV3_5G034170 Cucumis sativus L. HOM05D006955 ORTHO05D008701 7.3e-87 324.3 227 74.0
Nitab4.5_0004895g0100 Nicotiana tabacum HOM05D006955 ORTHO05D008701 9.6e-87 323.9 225 73.8
MELO3C012231.2 Cucumis melo HOM05D006955 ORTHO05D008701 1.3e-86 323.6 224 74.1
Eucgr.G02335 Eucalyptus grandis HOM05D006955 ORTHO05D008701 2.1e-86 322.8 227 74.0
Peaxi162Scf00382g00128 Petunia axillaris HOM05D006955 ORTHO05D008701 3.6e-86 322.0 227 73.1
SGA_v2.0_scaffold124G33553 Striga asiatica HOM05D006955 ORTHO05D008701 1.1e-85 320.5 224 73.2
Sed0012161 Sechium edule HOM05D006955 ORTHO05D008701 1.8e-85 319.7 227 73.6
GSVIVG01011919001 Vitis vinifera HOM05D006955 ORTHO05D008701 3.1e-85 318.9 227 74.0
Aqoxy3G00330 Aquilegia oxysepala HOM05D006955 ORTHO05D008701 1.2e-84 317.0 227 72.2
Migut.L01079 Erythranthe guttata HOM05D006955 ORTHO05D008701 1.5e-84 316.6 224 72.8
FAN07G1824 Fragaria x ananassa HOM05D006955 ORTHO05D008701 2.6e-84 315.8 221 72.9
Rhsim12G0082400 Rhododendron simsii HOM05D006955 ORTHO05D008701 2.6e-84 315.8 237 69.6
Atru.chr11.1296 Acer truncatum HOM05D006955 ORTHO05D008701 7.6e-84 314.3 227 72.2
SalBow8G1483 Salvia bowleyana HOM05D006955 ORTHO05D008701 7.6e-84 314.3 227 73.1
Ah.02g127040 Amaranthus hybridus HOM05D006955 ORTHO05D008701 1.7e-83 313.2 227 73.1
Cc11_g10340 Coffea canephora HOM05D006955 ORTHO05D008701 1.7e-83 313.2 225 72.0
Thhalv10008697m.g Eutrema salsugineum HOM05D006955 ORTHO05D008701 2.2e-83 312.8 227 70.9
QL01p043991 Quercus lobata HOM05D006955 ORTHO05D008701 4.9e-83 311.6 225 74.2
PSO017G5158 Papaver somniferum HOM05D006955 ORTHO05D008701 6.4e-83 311.2 227 72.2
PSO478G1614 Papaver somniferum HOM05D006955 ORTHO05D008701 2.4e-82 309.3 227 71.8
Sc11g0003240 Simmondsia chinensis HOM05D006955 ORTHO05D008701 5.4e-82 308.1 227 69.6
Sc11g0003300 Simmondsia chinensis HOM05D006955 ORTHO05D008701 5.4e-82 308.1 227 69.6
vmacro01371 Vaccinium macrocarpon HOM05D006955 ORTHO05D008701 9.3e-82 307.4 267 63.7
PGR119G2132 Punica granatum HOM05D006955 ORTHO05D008701 1.6e-81 306.6 227 71.4
AL1G25090 Arabidopsis lyrata HOM05D006955 ORTHO05D008701 2.1e-81 306.2 227 70.0
CARHR013710 Cardamine hirsuta HOM05D006955 ORTHO05D008701 2.1e-81 306.2 227 70.0
AUR62002894 Chenopodium quinoa HOM05D006955 ORTHO05D008701 2.1e-81 306.2 227 70.5
AT1G13330 Arabidopsis thaliana HOM05D006955 ORTHO05D008701 6.0e-81 304.7 227 70.0
ECA233G4186 Erigeron canadensis HOM05D006955 ORTHO05D008701 7.9e-81 304.3 224 69.2
FAN22G1329 Fragaria x ananassa HOM05D006955 ORTHO05D008701 7.9e-81 304.3 242 67.8
Aa31LG1G1480 Aethionema arabicum HOM05D006955 ORTHO05D008701 1.0e-80 303.9 225 70.2
Oeu033300.1 Olea europaea HOM05D006955 ORTHO05D008701 1.3e-80 303.5 260 63.5
MSTRG.13515 Avicennia marina HOM05D006955 ORTHO05D008701 1.8e-80 303.1 224 71.0
DCAR_023669 Daucus carota HOM05D006955 ORTHO05D008701 3.9e-80 302.0 210 74.3
C05p09970 Brassica napus HOM05D006955 ORTHO05D008701 6.7e-80 301.2 227 68.3
FAN12G2251 Fragaria x ananassa HOM05D006955 ORTHO05D008701 4.3e-79 298.5 221 70.1
TAR629G1122 Trochodendron aralioides HOM05D006955 ORTHO05D008701 5.6e-79 298.1 250 62.8
Hund25084 Selenicereus undatus HOM05D006955 ORTHO05D008701 7.4e-79 297.7 227 67.8
A06p08430 Brassica napus HOM05D006955 ORTHO05D008701 1.6e-78 296.6 227 67.8
BraA06t24039Z Brassica rapa HOM05D006955 ORTHO05D008701 1.6e-78 296.6 227 67.8
Ciclev10032679m.g Citrus clementina HOM05D006955 ORTHO05D008701 6.2e-78 294.7 225 70.2
BcaC05g25057 Brassica carinata HOM05D006955 ORTHO05D008701 8.1e-78 294.3 227 67.4
BcaC05g25064 Brassica carinata HOM05D006955 ORTHO05D008701 8.1e-78 294.3 227 67.4
BolC5t29739H Brassica oleracea HOM05D006955 ORTHO05D008701 8.1e-78 294.3 227 67.4
Duzib251G0691 Durio zibethinus HOM05D006955 ORTHO05D008701 8.1e-78 294.3 227 70.5
Nitab4.5_0003823g0050 Nicotiana tabacum HOM05D006955 ORTHO05D008701 1.1e-77 293.9 203 73.9
MD16G1044800 Malus domestica HOM05D006955 ORTHO05D008701 1.8e-77 293.1 224 70.1
Cpa.g.sc1.190 Carica papaya HOM05D006955 ORTHO05D008701 4.0e-77 292.0 224 69.2
FAN12G1265 Fragaria x ananassa HOM05D006955 ORTHO05D008701 5.3e-77 291.6 231 68.0
EL10Ac6g14443 Beta vulgaris HOM05D006955 ORTHO05D008701 6.9e-77 291.2 224 67.4
Lsat_1_v5_gn_8_38900 Lactuca sativa HOM05D006955 ORTHO05D008701 1.2e-76 290.4 207 72.9
ATR0665G168 Amborella trichopoda HOM05D006955 ORTHO05D008701 2.0e-76 289.7 225 67.1
MD13G1044000 Malus domestica HOM05D006955 ORTHO05D008701 7.6e-76 287.7 224 69.2
BolC5t29750H Brassica oleracea HOM05D006955 ORTHO05D008701 2.2e-75 286.2 212 69.8
Thecc.02G357700 Theobroma cacao HOM05D006955 ORTHO05D008701 3.8e-75 285.4 194 77.3
HanXRQChr08g0214231 Helianthus annuus HOM05D006955 ORTHO05D008701 1.4e-74 283.5 227 67.0
TAR622G0049 Trochodendron aralioides HOM05D006955 ORTHO05D008701 3.5e-73 278.9 227 64.8
Carub.0001s1306 Capsella rubella HOM05D006955 ORTHO05D008701 6.7e-72 274.6 227 64.3
ClCG05G022860 Citrullus lanatus HOM05D006955 ORTHO05D008701 1.9e-71 273.1 241 62.2
CiPaw.15G005500 Carya illinoinensis HOM05D006955 ORTHO05D008701 5.7e-71 271.6 195 74.9
AUR62035251 Chenopodium quinoa HOM05D006955 ORTHO05D008701 2.4e-69 266.2 227 63.9
SHI33974 Sapria himalayana HOM05D006955 ORTHO05D008701 5.5e-66 255.0 212 64.6
SEGI_38068 Sequoiadendron giganteum HOM05D006955 ORTHO05D008701 3.5e-65 252.3 193 68.4
Solyc05g009560.4 Solanum lycopersicum HOM05D006955 ORTHO05D008701 3.9e-64 248.8 222 59.0
Sopen05g005370 Solanum pennellii HOM05D006955 ORTHO05D008701 3.9e-64 248.8 222 59.0
HPP92_011092 Vanilla planifolia HOM05D006955 ORTHO05D008701 1.1e-63 247.3 207 62.8
Zm00001eb216450 Zea mays HOM05D006955 ORTHO05D008701 1.3e-62 243.8 222 58.6
HPP92_011108 Vanilla planifolia HOM05D006955 ORTHO05D008701 3.7e-62 242.3 207 61.4
CAN.G656.28 Capsicum annuum HOM05D006955 ORTHO05D008701 1.8e-61 240.0 222 57.7
Mapoly0015s0151 Marchantia polymorpha HOM05D006955 ORTHO05D008701 5.5e-58 228.4 221 54.3
CDE05G2755 Ceratophyllum demersum HOM05D006955 ORTHO05D008701 6.1e-57 224.9 223 55.6
SMO203G0092 Selaginella moellendorffii HOM05D006955 ORTHO05D008701 1.0e-56 224.2 218 54.1
CBR_g3130 Chara braunii HOM05D006955 ORTHO05D008701 2.1e-49 199.9 213 50.2
PGSC0003DMG402012965 Solanum tuberosum HOM05D006955 ORTHO05D008701 1.2e-44 184.1 139 67.6
CAN.G706.23 Capsicum annuum HOM05D006955 ORTHO05D008701 1.5e-44 183.7 162 63.6
Pp3c23_21510 Physcomitrium patens HOM05D006955 ORTHO05D008701 1.6e-41 173.7 196 46.9
CAN.G884.17 Capsicum annuum HOM05D000526 ORTHO05D000956 1.8e-37 160.2 210 48.6
Potri.010G127101 Populus trichocarpa HOM05D006955 ORTHO05D008701 1.8e-29 133.7 163 50.9
unitig_27.g25246 Utricularia gibba HOM05D002984 ORTHO05D003561 1.6e-28 130.6 99 70.7
unitig_27.g25247 Utricularia gibba HOM05D006955 ORTHO05D008701 1.6e-25 120.6 95 64.2
Cre06.g284400 Chlamydomonas reinhardtii HOM05D006955 ORTHO05D008701 4.0e-16 89.4 220 29.1
MCO07G460 Micromonas commoda HOM05D006955 ORTHO05D008701 1.1e-13 81.3 194 29.9
Medtr5g055130 Medicago truncatula HOM05D002518 ORTHO05D002630 2.5e-10 70.1 213 34.7
PRCOL_00000208 Prasinoderma coloniale HOM05D006955 ORTHO05D008701 4.3e-10 69.3 220 28.2
Medtr4g007850 Medicago truncatula HOM05D003710 ORTHO05D258575 3.6e-09 66.2 105 46.7
C05p10030 Brassica napus HOM05D006955 ORTHO05D008701 1.7e-06 57.4 35 77.1


User provided reference genes

Program Settings