Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0002682 Lotus japonicus HOM05D003818 ORTHO05D004541 6.6e-73 277.3 145 100.0
LjContig00564g0007738 Lotus japonicus HOM05D003818 ORTHO05D004541 8.0e-71 270.4 145 99.3
Glyma.10G238600 Glycine max HOM05D003818 ORTHO05D004541 4.3e-64 248.1 145 89.7
Glyma.20G155900 Glycine max HOM05D003818 ORTHO05D004541 5.6e-64 247.7 145 89.7
Potri.012G136900 Populus trichocarpa HOM05D003818 ORTHO05D004541 1.4e-62 243.0 145 87.6
Lalb_Chr21g0304961 Lupinus albus HOM05D003818 ORTHO05D004541 1.8e-62 242.7 145 86.9
Potri.015G138800 Populus trichocarpa HOM05D003818 ORTHO05D004541 3.1e-62 241.9 145 86.9
Phvul.007G066800 Phaseolus vulgaris HOM05D003818 ORTHO05D004541 4.0e-62 241.5 145 89.0
Psat3g070640 Pisum sativum HOM05D003818 ORTHO05D004541 4.0e-62 241.5 146 86.3
Sabra15G0149800 Salix brachista HOM05D003818 ORTHO05D004541 4.0e-62 241.5 145 86.2
arahy.Tifrunner.gnm1.ann1.7N83Z4 Arachis hypogaea HOM05D003818 ORTHO05D004541 6.8e-62 240.7 143 87.4
arahy.Tifrunner.gnm1.ann1.Y3E72Q Arachis hypogaea HOM05D003818 ORTHO05D004541 6.8e-62 240.7 143 87.4
Phvul.007G009900 Phaseolus vulgaris HOM05D003818 ORTHO05D004541 6.8e-62 240.7 142 88.0
Manes.06G144400 Manihot esculenta HOM05D003818 ORTHO05D004541 8.9e-62 240.4 145 85.5
VMungo0720G0599 Vigna mungo HOM05D003818 ORTHO05D004541 4.4e-61 238.0 145 88.3
Medtr7g092450 Medicago truncatula HOM05D003818 ORTHO05D004541 5.8e-61 237.7 146 85.6
MD12G1011200 Malus domestica HOM05D003818 ORTHO05D004541 1.3e-60 236.5 146 84.9
Manes.14G028600 Manihot esculenta HOM05D003818 ORTHO05D004541 4.9e-60 234.6 145 84.1
TWI39G1222 Tripterygium wilfordii HOM05D003818 ORTHO05D004541 4.9e-60 234.6 145 86.2
Medtr0019s0160 Medicago truncatula HOM05D003818 ORTHO05D004541 8.3e-60 233.8 145 82.8
VMungo0720G0479 Vigna mungo HOM05D001872 ORTHO05D001859 8.3e-60 233.8 141 85.1
QL06p049138 Quercus lobata HOM05D003818 ORTHO05D004541 1.4e-59 233.0 144 86.1
CARHR264880 Cardamine hirsuta HOM05D003818 ORTHO05D004541 2.4e-59 232.3 146 85.6
Sabra12G0102700 Salix brachista HOM05D003818 ORTHO05D004541 2.4e-59 232.3 158 79.1
TWI23G0179 Tripterygium wilfordii HOM05D003818 ORTHO05D004541 2.4e-59 232.3 145 84.8
Aa31LG9G1570 Aethionema arabicum HOM05D003818 ORTHO05D004541 5.4e-59 231.1 146 84.2
AL8G26260 Arabidopsis lyrata HOM05D003818 ORTHO05D004541 5.4e-59 231.1 146 84.9
CsaV3_3G016860 Cucumis sativus L. HOM05D003818 ORTHO05D004541 5.4e-59 231.1 143 84.6
Nn3g21139 Nelumbo nucifera HOM05D003818 ORTHO05D004541 7.1e-59 230.7 145 83.4
Haze_13747 Corylus avellana HOM05D003818 ORTHO05D004541 9.2e-59 230.3 135 89.6
TPR.G3844 Trifolium pratense HOM05D003818 ORTHO05D004541 9.2e-59 230.3 145 83.4
Cfa020017 Carpinus fangiana HOM05D003818 ORTHO05D004541 1.2e-58 229.9 133 91.0
Atru.chr1.512 Acer truncatum HOM05D003818 ORTHO05D004541 1.6e-58 229.6 145 84.1
Thhalv10027983m.g Eutrema salsugineum HOM05D003818 ORTHO05D004541 1.6e-58 229.6 146 84.2
Sed0011620 Sechium edule HOM05D003818 ORTHO05D004541 1.6e-58 229.6 143 83.9
AT5G51940 Arabidopsis thaliana HOM05D003818 ORTHO05D004541 2.1e-58 229.2 146 83.6
CiPaw.04G066900 Carya illinoinensis HOM05D003818 ORTHO05D004541 2.1e-58 229.2 145 86.2
AL3G42280 Arabidopsis lyrata HOM05D003818 ORTHO05D004541 2.7e-58 228.8 146 83.6
BcaB06g27416 Brassica carinata HOM05D003818 ORTHO05D004541 3.5e-58 228.4 146 83.6
Lalb_Chr06g0161031 Lupinus albus HOM05D003818 ORTHO05D004541 3.5e-58 228.4 146 85.6
RcHm_v2.0_Chr6g0276321 Rosa chinensis HOM05D003818 ORTHO05D004541 4.6e-58 228.0 145 81.4
GSVIVG01010613001 Vitis vinifera HOM05D003818 ORTHO05D004541 4.6e-58 228.0 145 84.8
Cpa.g.sc370.10 Carica papaya HOM05D003818 ORTHO05D004541 6.0e-58 227.6 145 84.8
MBI04_g00300_MAGBIO Magnolia biondii HOM05D003818 ORTHO05D004541 6.0e-58 227.6 145 85.5
Sp7g01990 Schrenkiella parvula HOM05D003818 ORTHO05D004541 6.0e-58 227.6 146 84.2
Cfa008286 Carpinus fangiana HOM05D003818 ORTHO05D004541 7.8e-58 227.3 133 90.2
BraA04t16951Z Brassica rapa HOM05D003818 ORTHO05D004541 1.3e-57 226.5 146 82.9
Eucgr.H00421 Eucalyptus grandis HOM05D003818 ORTHO05D004541 1.3e-57 226.5 145 84.1
TAR374G0305 Trochodendron aralioides HOM05D003818 ORTHO05D004541 1.3e-57 226.5 144 81.9
A04p12880 Brassica napus HOM05D003818 ORTHO05D004541 2.3e-57 225.7 146 82.2
C04p46580 Brassica napus HOM05D003818 ORTHO05D004541 3.0e-57 225.3 146 82.2
MD17G1234800 Malus domestica HOM05D003818 ORTHO05D004541 3.0e-57 225.3 145 80.0
Prupe.3G134400 Prunus persica HOM05D003818 ORTHO05D004541 3.0e-57 225.3 146 81.5
BolC4t26244H Brassica oleracea HOM05D003818 ORTHO05D004541 3.9e-57 224.9 146 82.2
Carub.0003s2626 Capsella rubella HOM05D003818 ORTHO05D004541 3.9e-57 224.9 146 82.2
THA.LOC104818368 Tarenaya hassleriana HOM05D003818 ORTHO05D004541 3.9e-57 224.9 146 82.9
GSVIVG01020800001 Vitis vinifera HOM05D003818 ORTHO05D004541 3.9e-57 224.9 145 84.1
Sed0012084 Sechium edule HOM05D003818 ORTHO05D004541 6.6e-57 224.2 143 82.5
THA.LOC104819386 Tarenaya hassleriana HOM05D003818 ORTHO05D004541 6.6e-57 224.2 146 81.5
Carub.0008s1203 Capsella rubella HOM05D003818 ORTHO05D004541 8.6e-57 223.8 146 82.2
Duzib068G1062 Durio zibethinus HOM05D003818 ORTHO05D004541 1.1e-56 223.4 146 83.6
FvH4_2g14180 Fragaria vesca HOM05D003818 ORTHO05D004541 1.5e-56 223.0 145 80.0
FAN24G1752 Fragaria x ananassa HOM05D003818 ORTHO05D004541 1.5e-56 223.0 145 80.0
FAN15G1651 Fragaria x ananassa HOM05D003818 ORTHO05D004541 1.9e-56 222.6 145 80.0
Sp2g17150 Schrenkiella parvula HOM05D003818 ORTHO05D004541 1.9e-56 222.6 146 82.9
FAN27G0424 Fragaria x ananassa HOM05D003818 ORTHO05D004541 4.3e-56 221.5 145 79.3
MBI07_g30196_MAGBIO Magnolia biondii HOM05D003818 ORTHO05D004541 4.3e-56 221.5 145 84.8
PGR102G2559 Punica granatum HOM05D003818 ORTHO05D004541 4.3e-56 221.5 145 80.7
BcaB04g19460 Brassica carinata HOM05D003818 ORTHO05D004541 5.6e-56 221.1 146 81.5
Thhalv10005087m.g Eutrema salsugineum HOM05D003818 ORTHO05D004541 5.6e-56 221.1 146 82.2
Gohir.A11G009700 Gossypium hirsutum HOM05D003818 ORTHO05D004541 7.3e-56 220.7 146 82.9
TAR375G1045 Trochodendron aralioides HOM05D003818 ORTHO05D004541 7.3e-56 220.7 143 82.5
AT2G04630 Arabidopsis thaliana HOM05D003818 ORTHO05D004541 9.5e-56 220.3 146 81.5
ATR0757G129 Amborella trichopoda HOM05D003818 ORTHO05D004541 2.1e-55 219.2 146 81.5
BcaC04g23878 Brassica carinata HOM05D003818 ORTHO05D004541 2.1e-55 219.2 146 80.8
A09p03630 Brassica napus HOM05D003818 ORTHO05D004541 2.1e-55 219.2 146 80.8
C09p03860 Brassica napus HOM05D003818 ORTHO05D004541 2.1e-55 219.2 146 80.8
BolC9t53311H Brassica oleracea HOM05D003818 ORTHO05D004541 2.1e-55 219.2 146 80.8
BraA09t36001Z Brassica rapa HOM05D003818 ORTHO05D004541 2.1e-55 219.2 146 80.8
Gohir.D11G009000 Gossypium hirsutum HOM05D003818 ORTHO05D004541 2.8e-55 218.8 146 82.2
Gorai.007G010600 Gossypium raimondii HOM05D003818 ORTHO05D004541 2.8e-55 218.8 146 82.2
Dinv28474 Davidia involucrata HOM05D003818 ORTHO05D004541 1.4e-54 216.5 145 80.0
Migut.K00399 Erythranthe guttata HOM05D003818 ORTHO05D004541 5.2e-54 214.5 147 79.6
Os03g0586600 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D004541 5.2e-54 214.5 143 82.5
HanXRQChr16g0532841 Helianthus annuus HOM05D003818 ORTHO05D004541 8.9e-54 213.8 147 78.9
MELO3C006881.2 Cucumis melo HOM05D003818 ORTHO05D004541 1.2e-53 213.4 131 85.5
SGA_v2.0_scaffold59G20747 Striga asiatica HOM05D003818 ORTHO05D004541 1.2e-53 213.4 147 80.3
ClCG05G016800 Citrullus lanatus HOM05D002695 ORTHO05D002964 4.4e-53 211.5 131 84.7
HanXRQChr04g0108631 Helianthus annuus HOM05D003818 ORTHO05D004541 5.8e-53 211.1 147 77.6
Rhsim05G0017100 Rhododendron simsii HOM05D003818 ORTHO05D004541 7.6e-53 210.7 145 79.3
Haze_20202 Corylus avellana HOM05D003818 ORTHO05D004541 1.3e-52 209.9 137 82.5
Oeu061636.1 Olea europaea HOM05D003818 ORTHO05D004541 1.3e-52 209.9 145 80.0
Zm00001eb219520 Zea mays HOM05D003818 ORTHO05D004541 1.3e-52 209.9 147 78.2
Cc02_g03330 Coffea canephora HOM05D003818 ORTHO05D004541 1.7e-52 209.5 147 80.3
Duzib084G1211 Durio zibethinus HOM05D003818 ORTHO05D004541 1.7e-52 209.5 145 79.3
Lsat_1_v5_gn_1_9221 Lactuca sativa HOM05D003818 ORTHO05D004541 3.8e-52 208.4 147 76.9
Thecc.03G171400 Theobroma cacao HOM05D003818 ORTHO05D004541 4.9e-52 208.0 145 79.3
Dinv35185 Davidia involucrata HOM05D003818 ORTHO05D004541 8.4e-52 207.2 145 78.6
Rhsim03G0177700 Rhododendron simsii HOM05D003818 ORTHO05D004541 8.4e-52 207.2 145 77.9
EL10Ac1g00990 Beta vulgaris HOM05D003818 ORTHO05D004541 1.1e-51 206.8 145 77.9
MSTRG.27132 Avicennia marina HOM05D003818 ORTHO05D004541 1.4e-51 206.5 145 78.6
Hma1.2p1_0099F.1_g048510 Hydrangea macrophylla HOM05D003818 ORTHO05D004541 3.2e-51 205.3 145 78.6
Hund27319 Selenicereus undatus HOM05D003818 ORTHO05D004541 4.1e-51 204.9 145 79.3
AUR62004298 Chenopodium quinoa HOM05D003818 ORTHO05D004541 5.4e-51 204.5 145 76.6
Ciclev10006171m.g Citrus clementina HOM05D003818 ORTHO05D004541 5.4e-51 204.5 145 79.3
CsaV3_3G046320 Cucumis sativus L. HOM05D003818 ORTHO05D004541 5.4e-51 204.5 143 79.0
AUR62022747 Chenopodium quinoa HOM05D003818 ORTHO05D004541 7.1e-51 204.1 145 76.6
PGSC0003DMG400008922 Solanum tuberosum HOM05D003818 ORTHO05D004541 1.6e-50 203.0 144 78.5
Os07g0463100 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D004541 4.6e-50 201.4 143 76.9
Solyc09g010500.3 Solanum lycopersicum HOM05D003818 ORTHO05D004541 4.6e-50 201.4 144 77.8
Sopen09g005230 Solanum pennellii HOM05D003818 ORTHO05D004541 4.6e-50 201.4 144 77.8
Atru.chr3.2134 Acer truncatum HOM05D003818 ORTHO05D004541 6.0e-50 201.1 145 75.2
CSS0048006 Camellia sinensis var. sinensis HOM05D003818 ORTHO05D004541 7.8e-50 200.7 135 80.0
Actinidia31809 Actinidia chinensis HOM05D003818 ORTHO05D004541 1.7e-49 199.5 144 77.1
Aqoxy7G00432 Aquilegia oxysepala HOM05D003818 ORTHO05D004541 1.7e-49 199.5 144 76.4
ClCG05G007860 Citrullus lanatus HOM05D003818 ORTHO05D004541 1.7e-49 199.5 202 59.4
PSO478G0785 Papaver somniferum HOM05D003818 ORTHO05D004541 1.7e-49 199.5 145 77.9
PSO675G1382 Papaver somniferum HOM05D003818 ORTHO05D004541 1.7e-49 199.5 145 77.9
PSO782G3144 Papaver somniferum HOM05D003818 ORTHO05D004541 1.7e-49 199.5 145 77.9
MSTRG.26327 Avicennia marina HOM05D003818 ORTHO05D004541 3.0e-49 198.7 145 76.6
Gohir.D08G112900 Gossypium hirsutum HOM05D003818 ORTHO05D004541 3.9e-49 198.4 146 77.4
Gorai.004G121300 Gossypium raimondii HOM05D003818 ORTHO05D004541 3.9e-49 198.4 146 77.4
SEGI_10630 Sequoiadendron giganteum HOM05D003818 ORTHO05D004541 5.1e-49 198.0 150 76.0
Nitab4.5_0017332g0010 Nicotiana tabacum HOM05D003818 ORTHO05D004541 1.1e-48 196.8 151 75.5
PSO541G1664 Papaver somniferum HOM05D003818 ORTHO05D004541 1.5e-48 196.4 144 77.1
COL.COLO4_14270 Corchorus olitorius HOM05D003818 ORTHO05D004541 1.9e-48 196.1 129 80.6
DCAR_018174 Daucus carota HOM05D003818 ORTHO05D004541 4.3e-48 194.9 147 74.1
ECA247G1139 Erigeron canadensis HOM05D003818 ORTHO05D004541 5.6e-48 194.5 143 74.8
Gohir.A08G082700 Gossypium hirsutum HOM05D003818 ORTHO05D004541 5.6e-48 194.5 146 76.7
SGA_v2.0_scaffold50G18457 Striga asiatica HOM05D003818 ORTHO05D004541 1.2e-47 193.4 181 64.1
Hma1.2p1_0270F.1_g108370 Hydrangea macrophylla HOM05D003818 ORTHO05D004541 8.1e-47 190.7 132 78.0
Pp3c16_17050 Physcomitrium patens HOM05D003818 ORTHO05D004541 1.5e-45 186.4 148 73.0
unitig_0.g2487 Utricularia gibba HOM05D003818 ORTHO05D004541 5.8e-45 184.5 142 72.5
vmacro16312 Vaccinium macrocarpon HOM05D003818 ORTHO05D004541 9.9e-45 183.7 169 63.9
CDE06G2832 Ceratophyllum demersum HOM05D003818 ORTHO05D004541 1.3e-44 183.3 145 73.1
Lsat_1_v5_gn_3_64081 Lactuca sativa HOM05D003818 ORTHO05D004541 1.4e-43 179.9 144 70.1
Gohir.D12G260866 Gossypium hirsutum HOM05D003818 ORTHO05D004541 2.4e-43 179.1 133 75.2
CANSAT56G1911 Cannabis sativa HOM05D003818 ORTHO05D004541 9.3e-43 177.2 121 79.3
CDE02G0031 Ceratophyllum demersum HOM05D003818 ORTHO05D004541 3.5e-42 175.3 145 71.7
Oeu030115.1 Olea europaea HOM05D003818 ORTHO05D004541 3.5e-42 175.3 145 71.0
Peaxi162Scf00039g01318 Petunia axillaris HOM05D003818 ORTHO05D004541 1.7e-41 172.9 143 69.9
SMO200G0145 Selaginella moellendorffii HOM05D003818 ORTHO05D004541 1.7e-41 172.9 95 89.5
Peaxi162Scf01172g00037 Petunia axillaris HOM05D003818 ORTHO05D004541 2.3e-41 172.6 141 72.3
DCAR_009510 Daucus carota HOM05D000059 ORTHO05D000128 6.6e-41 171.0 145 68.3
vmacro06714 Vaccinium macrocarpon HOM05D003818 ORTHO05D004541 2.5e-40 169.1 146 69.2
Mapoly0001s0266 Marchantia polymorpha HOM05D003818 ORTHO05D004541 3.3e-40 168.7 147 68.7
AagrBONN_evm.TU.Sc2ySwM_344.4289 Anthoceros agrestis HOM05D003818 ORTHO05D004541 7.3e-40 167.5 145 63.4
Sc23g0003230 Simmondsia chinensis HOM05D003818 ORTHO05D004541 1.3e-39 166.8 133 72.9
SalBow5G5531 Salvia bowleyana HOM05D003818 ORTHO05D004541 3.1e-38 162.2 124 75.8
TAR375G0179 Trochodendron aralioides HOM05D003818 ORTHO05D004541 5.3e-38 161.4 117 78.6
MD09G1242800 Malus domestica HOM05D003818 ORTHO05D004541 6.9e-38 161.0 91 86.8
Zm00001eb049200 Zea mays HOM05D003818 ORTHO05D004541 6.9e-38 161.0 123 74.8
Aqoxy6G01685 Aquilegia oxysepala HOM05D003818 ORTHO05D004541 9.0e-38 160.6 136 73.5
Nitab4.5_0006124g0010 Nicotiana tabacum HOM05D003818 ORTHO05D004541 1.5e-37 159.8 121 76.9
Haze_09431 Corylus avellana HOM05D003818 ORTHO05D004541 1.7e-36 156.4 133 69.2
CBR_g31915 Chara braunii HOM05D003818 ORTHO05D004541 6.4e-36 154.5 149 65.8
Oeu021768.1 Olea europaea HOM05D003818 ORTHO05D004541 1.9e-35 152.9 123 73.2
VMungo0647G2358 Vigna mungo HOM05D003818 ORTHO05D004541 3.0e-33 145.6 104 81.7
CAN.G97.6 Capsicum annuum HOM05D003818 ORTHO05D004541 1.1e-32 143.7 112 73.2
arahy.Tifrunner.gnm1.ann1.36XVJD Arachis hypogaea HOM05D003818 ORTHO05D004541 4.8e-31 138.3 112 70.5
MELO3C003707.2 Cucumis melo HOM05D003818 ORTHO05D004541 1.4e-30 136.7 143 56.6
MCO13G124 Micromonas commoda HOM05D003818 ORTHO05D004541 9.0e-30 134.0 106 69.8
Cre01.g002200 Chlamydomonas reinhardtii HOM05D003818 ORTHO05D004541 2.0e-29 132.9 139 59.0
Prupe.7G013200 Prunus persica HOM05D003818 ORTHO05D004541 5.8e-29 131.3 99 75.8
PRCOL_00007084 Prasinoderma coloniale HOM05D003818 ORTHO05D004541 3.2e-27 125.6 130 59.2
Nitab4.5_0002113g0140 Nicotiana tabacum HOM05D003818 ORTHO05D004541 4.6e-26 121.7 105 73.3
Oeu021769.1 Olea europaea HOM05D003818 ORTHO05D004541 1.0e-25 120.6 99 73.7
Haze_26305 Corylus avellana HOM05D003818 ORTHO05D004541 2.3e-25 119.4 69 82.6
SalBow8G3306 Salvia bowleyana HOM05D003818 ORTHO05D004541 3.0e-25 119.0 119 62.2
SalBow8G5018 Salvia bowleyana HOM05D003818 ORTHO05D004541 3.0e-25 119.0 119 62.2
TAR374G0228 Trochodendron aralioides HOM05D003818 ORTHO05D004541 1.1e-24 117.1 64 87.5
Nitab4.5_0002077g0060 Nicotiana tabacum HOM05D003818 ORTHO05D004541 2.8e-23 112.5 143 53.1
arahy.Tifrunner.gnm1.ann1.28837M Arachis hypogaea HOM05D003818 ORTHO05D004541 8.2e-23 110.9 132 51.5
arahy.Tifrunner.gnm1.ann1.99YBLU Arachis hypogaea HOM05D003818 ORTHO05D004541 2.4e-22 109.4 132 51.5
arahy.Tifrunner.gnm1.ann1.TF2L72 Arachis hypogaea HOM05D003818 ORTHO05D004541 5.8e-21 104.8 83 72.3
arahy.Tifrunner.gnm1.ann1.VWKV4W Arachis hypogaea HOM05D003818 ORTHO05D004541 2.9e-20 102.4 78 74.4
arahy.Tifrunner.gnm1.ann1.FSRU1U Arachis hypogaea HOM05D003818 ORTHO05D004541 3.8e-20 102.1 77 75.3
AagrBONN_evm.TU.Sc2ySwM_344.4292 Anthoceros agrestis HOM05D003818 ORTHO05D004541 2.5e-19 99.4 98 58.2
Actinidia03108 Actinidia chinensis HOM05D003818 ORTHO05D054983 2.3e-17 92.8 45 91.1
PGR142G2678 Punica granatum HOM05D003818 ORTHO05D004541 3.7e-15 85.5 82 63.4
Os08g0426000 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D295196 1.3e-12 77.0 77 63.6
arahy.Tifrunner.gnm1.ann1.VXTW3V Arachis hypogaea HOM05D003818 ORTHO05D013217 1.5e-08 63.5 35 91.4


User provided reference genes

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