Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 9.3e-118 426.8 201 100.0
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 2.8e-90 335.5 173 90.2
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 2.5e-70 269.2 175 72.0
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 4.4e-67 258.5 165 72.1
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 1.3e-63 246.9 175 67.4
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 1.6e-61 240.0 170 67.1
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 2.8e-61 239.2 179 62.0
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 1.0e-60 237.3 170 66.5
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 6.8e-60 234.6 173 65.9
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 2.6e-59 232.6 173 65.9
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 4.4e-59 231.9 168 64.9
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 3.1e-57 225.7 174 61.5
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 1.2e-56 223.8 175 63.4
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 1.6e-56 223.4 177 59.9
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 5.8e-51 204.9 148 62.2
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 2.3e-44 183.0 158 52.5
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 1.2e-43 180.6 165 48.5
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 2.0e-43 179.9 168 49.4
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 9.8e-43 177.6 155 54.2
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 2.9e-42 176.0 172 47.7
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 2.9e-42 176.0 172 47.7
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 8.3e-42 174.5 154 50.6
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 8.3e-42 174.5 183 47.5
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 1.4e-41 173.7 155 52.3
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 3.2e-41 172.6 146 49.3
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 2.7e-40 169.5 156 51.9
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 2.7e-40 169.5 149 49.7
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 4.6e-40 168.7 150 48.0
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 7.8e-40 167.9 147 51.7
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 1.0e-39 167.5 141 53.2
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 1.7e-39 166.8 149 48.3
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 2.3e-39 166.4 183 44.8
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 2.3e-39 166.4 145 50.3
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 3.0e-39 166.0 145 50.3
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 3.0e-39 166.0 163 47.2
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 3.0e-39 166.0 156 48.7
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 3.0e-39 166.0 156 48.7
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 3.9e-39 165.6 145 51.0
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 5.1e-39 165.2 145 50.3
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 6.6e-39 164.9 170 45.9
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 8.6e-39 164.5 182 44.0
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 1.9e-38 163.3 143 49.7
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 1.9e-38 163.3 182 43.4
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 1.9e-38 163.3 193 44.0
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 2.5e-38 162.9 148 49.3
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 2.5e-38 162.9 148 49.3
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 5.6e-38 161.8 145 49.0
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.2e-37 160.6 141 48.9
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 1.6e-37 160.2 141 50.4
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 2.1e-37 159.8 145 46.9
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 2.1e-37 159.8 141 50.4
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 2.8e-37 159.5 156 47.4
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 2.8e-37 159.5 139 50.4
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 4.7e-37 158.7 142 48.6
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 4.7e-37 158.7 156 47.4
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 6.2e-37 158.3 141 49.6
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 6.2e-37 158.3 141 49.6
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 6.2e-37 158.3 138 48.6
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 8.1e-37 157.9 138 48.6
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 1.4e-36 157.1 144 47.9
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 1.4e-36 157.1 138 50.7
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 1.8e-36 156.8 141 49.6
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 1.8e-36 156.8 141 48.9
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 1.8e-36 156.8 145 48.3
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 1.8e-36 156.8 145 49.7
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 1.8e-36 156.8 156 47.4
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 4.0e-36 155.6 141 49.6
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 6.8e-36 154.8 141 49.6
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 8.9e-36 154.5 141 48.9
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 1.2e-35 154.1 141 48.9
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 1.2e-35 154.1 141 48.9
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 1.2e-35 154.1 141 49.6
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 1.5e-35 153.7 156 46.8
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 2.0e-35 153.3 141 48.9
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 2.0e-35 153.3 141 47.5
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 2.6e-35 152.9 139 47.5
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 3.4e-35 152.5 141 47.5
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 4.4e-35 152.1 141 46.8
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 5.8e-35 151.8 141 46.8
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 7.5e-35 151.4 141 47.5
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 7.5e-35 151.4 141 47.5
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 9.9e-35 151.0 141 46.1
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 9.9e-35 151.0 130 52.3
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 9.9e-35 151.0 154 45.5
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 9.9e-35 151.0 153 45.8
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 1.3e-34 150.6 139 48.2
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.7e-34 150.2 165 44.8
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 2.2e-34 149.8 141 46.8
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 8.3e-34 147.9 142 44.4
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 8.3e-34 147.9 142 44.4
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 1.4e-33 147.1 166 42.2
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 2.4e-33 146.4 152 46.1
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 2.4e-33 146.4 167 43.1
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 7.1e-33 144.8 148 40.5
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 9.2e-33 144.4 165 40.0
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 2.1e-32 143.3 166 39.2
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 4.6e-32 142.1 184 39.1
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 1.3e-31 140.6 133 45.9
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 1.7e-31 140.2 183 38.8
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 3.9e-31 139.0 139 46.8
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 1.1e-30 137.5 153 41.2
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.5e-30 137.1 164 40.9
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 1.9e-30 136.7 139 43.9
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 2.5e-30 136.3 154 42.2
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 2.5e-30 136.3 118 45.8
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 2.5e-30 136.3 142 40.1
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 3.3e-30 136.0 152 42.8
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 3.3e-30 136.0 146 38.4
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 7.3e-30 134.8 122 48.4
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 2.1e-29 133.3 145 44.8
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 3.6e-29 132.5 136 39.0
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 6.2e-29 131.7 154 42.2
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 6.2e-29 131.7 161 41.0
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 1.8e-28 130.2 153 39.9
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 2.4e-28 129.8 187 37.4
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 5.2e-28 128.6 165 39.4
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 6.8e-28 128.3 186 35.5
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 1.2e-27 127.5 139 44.6
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 1.5e-27 127.1 102 55.9
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 1.5e-27 127.1 105 51.4
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 3.4e-27 125.9 201 34.8
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 7.6e-27 124.8 175 40.0
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 2.9e-26 122.9 185 35.7
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 3.8e-26 122.5 125 48.8
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 3.8e-26 122.5 170 37.6
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 6.4e-26 121.7 140 40.7
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 8.4e-26 121.3 130 42.3
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 1.1e-25 120.9 145 37.9
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 4.2e-25 119.0 140 38.6
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 3.0e-23 112.8 170 35.9
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 6.6e-23 111.7 139 40.3
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 1.1e-22 110.9 166 34.9
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 1.6e-21 107.1 93 49.5
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 1.6e-21 107.1 92 50.0
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 2.1e-21 106.7 92 50.0
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 2.1e-21 106.7 168 32.7
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 2.8e-21 106.3 143 37.1
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 1.1e-20 104.4 154 35.1
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 1.5e-19 100.5 164 34.1
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 1.5e-19 100.5 91 49.5
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 1.5e-19 100.5 127 36.2
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 3.4e-19 99.4 141 36.9
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 3.4e-19 99.4 86 48.8
Gohir.D11G074550 Gossypium hirsutum HOM05D004214 ORTHO05D004963 2.9e-18 96.3 130 40.0
Gorai.007G080000 Gossypium raimondii HOM05D004214 ORTHO05D004963 3.8e-18 95.9 130 40.0
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 3.8e-18 95.9 86 46.5
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 3.8e-18 95.9 126 36.5
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 1.9e-17 93.6 82 51.2
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 7.8e-16 88.2 120 34.2
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 9.6e-14 81.3 140 32.9
MELO3C009848.2 Cucumis melo HOM05D004214 ORTHO05D004963 6.4e-10 68.6 146 30.8
Sabra17G0077200 Salix brachista HOM05D004214 ORTHO05D004963 8.4e-10 68.2 103 38.8
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.1e-09 67.8 151 25.8
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 1.4e-09 67.4 141 29.1
CsaV3_3G041190 Cucumis sativus L. HOM05D004214 ORTHO05D004963 1.3e-07 60.8 163 28.8
Lj3A350G16 Lonicera japonica HOM05D004214 ORTHO05D004963 2.3e-07 60.1 62 45.2
Aa31LG9G16510 Aethionema arabicum HOM05D004214 ORTHO05D004963 5.6e-06 55.5 53 41.5
Lj1g0021452 Lotus japonicus HOM05D004214 ORTHO05D004963 5.6e-06 55.5 49 53.1


User provided reference genes

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