Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P347T15 Lonicera japonica HOM05D005859 ORTHO05D007576 6.8e-87 323.9 160 100.0
DCAR_010833 Daucus carota HOM05D005859 ORTHO05D007576 7.5e-78 293.9 158 90.5
Dinv07263 Davidia involucrata HOM05D005859 ORTHO05D007576 6.3e-77 290.8 157 90.4
QL12p026076 Quercus lobata HOM05D005859 ORTHO05D007576 6.3e-77 290.8 157 89.8
CiPaw.07G208600 Carya illinoinensis HOM05D005859 ORTHO05D007576 8.3e-77 290.4 158 89.9
Migut.A01131 Erythranthe guttata HOM05D005859 ORTHO05D007576 8.3e-77 290.4 158 89.2
Oeu056039.1 Olea europaea HOM05D005859 ORTHO05D007576 2.4e-76 288.9 157 89.2
Actinidia22411 Actinidia chinensis HOM05D005859 ORTHO05D007576 3.1e-76 288.5 157 89.8
PGR042G0112 Punica granatum HOM05D005859 ORTHO05D007576 3.1e-76 288.5 158 89.2
Duzib151G0446 Durio zibethinus HOM05D005859 ORTHO05D007576 5.4e-76 287.7 158 89.2
MSTRG.12122 Avicennia marina HOM05D005859 ORTHO05D007576 7.0e-76 287.3 158 89.2
Duzib151G0554 Durio zibethinus HOM05D005859 ORTHO05D007576 9.2e-76 287.0 158 89.2
Sabra18G0009500 Salix brachista HOM05D005859 ORTHO05D007576 9.2e-76 287.0 159 88.1
Cpa.g.sc10.203 Carica papaya HOM05D005859 ORTHO05D007576 1.6e-75 286.2 157 89.2
Ciclev10009277m.g Citrus clementina HOM05D005859 ORTHO05D007576 1.6e-75 286.2 157 89.2
FvH4_2g36340 Fragaria vesca HOM05D005859 ORTHO05D007576 2.0e-75 285.8 158 88.0
FAN15G0047 Fragaria x ananassa HOM05D005859 ORTHO05D007576 2.0e-75 285.8 158 88.0
THA.LOC104814931 Tarenaya hassleriana HOM05D005859 ORTHO05D007576 2.0e-75 285.8 158 88.6
Nn2g12765 Nelumbo nucifera HOM05D005859 ORTHO05D007576 2.7e-75 285.4 158 86.1
Rhsim05G0088100 Rhododendron simsii HOM05D005859 ORTHO05D007576 2.7e-75 285.4 157 87.9
CSS0019957 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 3.5e-75 285.0 159 87.4
Cfa013324 Carpinus fangiana HOM05D005859 ORTHO05D007576 3.5e-75 285.0 156 88.5
Haze_21816 Corylus avellana HOM05D005859 ORTHO05D007576 3.5e-75 285.0 157 87.3
FAN20G1422 Fragaria x ananassa HOM05D005859 ORTHO05D007576 3.5e-75 285.0 158 87.3
Potri.018G003900 Populus trichocarpa HOM05D005859 ORTHO05D007576 4.5e-75 284.6 159 86.8
Sabra18G0001700 Salix brachista HOM05D005859 ORTHO05D007576 4.5e-75 284.6 159 87.4
Potri.006G277100 Populus trichocarpa HOM05D005859 ORTHO05D007576 5.9e-75 284.3 158 87.3
Sc10g0009100 Simmondsia chinensis HOM05D005859 ORTHO05D007576 5.9e-75 284.3 158 87.3
Atru.chr7.2673 Acer truncatum HOM05D005859 ORTHO05D007576 1.0e-74 283.5 157 88.5
Manes.08G049200 Manihot esculenta HOM05D005859 ORTHO05D007576 1.0e-74 283.5 158 86.7
Rhsim02G0125100 Rhododendron simsii HOM05D005859 ORTHO05D007576 1.0e-74 283.5 157 87.3
Sabra06G0214800 Salix brachista HOM05D005859 ORTHO05D007576 1.0e-74 283.5 158 87.3
SGA_v2.0_scaffold104G30176 Striga asiatica HOM05D005859 ORTHO05D007576 1.0e-74 283.5 158 87.3
CANSAT64G2965 Cannabis sativa HOM05D005859 ORTHO05D007576 1.3e-74 283.1 159 85.5
MELO3C011163.2 Cucumis melo HOM05D005859 ORTHO05D007576 1.3e-74 283.1 158 88.0
Prupe.1G454800 Prunus persica HOM05D005859 ORTHO05D007576 1.3e-74 283.1 158 86.1
ECA238G0328 Erigeron canadensis HOM05D005859 ORTHO05D007576 2.3e-74 282.3 157 88.5
Gohir.D09G062800 Gossypium hirsutum HOM05D005859 ORTHO05D007576 2.9e-74 282.0 157 87.9
RcHm_v2.0_Chr6g0305541 Rosa chinensis HOM05D005859 ORTHO05D007576 2.9e-74 282.0 158 86.1
Aqoxy7G02813 Aquilegia oxysepala HOM05D005859 ORTHO05D007576 5.0e-74 281.2 158 86.7
ClCG08G012440 Citrullus lanatus HOM05D005859 ORTHO05D007576 5.0e-74 281.2 158 87.3
COL.COLO4_34684 Corchorus olitorius HOM05D005859 ORTHO05D007576 5.0e-74 281.2 158 86.1
MD08G1121000 Malus domestica HOM05D005859 ORTHO05D007576 5.0e-74 281.2 156 87.2
Sed0013908 Sechium edule HOM05D005859 ORTHO05D007576 6.6e-74 280.8 158 87.3
TWI63G1176 Tripterygium wilfordii HOM05D005859 ORTHO05D007576 6.6e-74 280.8 157 86.0
TAR625G0738 Trochodendron aralioides HOM05D005859 ORTHO05D007576 6.6e-74 280.8 158 84.8
Lj1g0020437 Lotus japonicus HOM05D005859 ORTHO05D007576 8.6e-74 280.4 157 87.9
MBI07_g41262_MAGBIO Magnolia biondii HOM05D005859 ORTHO05D007576 1.1e-73 280.0 160 86.2
Thecc.04G293600 Theobroma cacao HOM05D005859 ORTHO05D007576 1.1e-73 280.0 157 86.6
Gohir.A09G063900 Gossypium hirsutum HOM05D005859 ORTHO05D007576 1.5e-73 279.6 159 84.9
Sed0022456 Sechium edule HOM05D005859 ORTHO05D007576 1.5e-73 279.6 158 86.7
CsaV3_2G031130 Cucumis sativus L. HOM05D005859 ORTHO05D007576 1.9e-73 279.3 158 86.7
HanXRQChr07g0193381 Helianthus annuus HOM05D005859 ORTHO05D007576 1.9e-73 279.3 157 86.6
Eucgr.A02021 Eucalyptus grandis HOM05D005859 ORTHO05D007576 2.5e-73 278.9 158 85.4
Gorai.006G077600 Gossypium raimondii HOM05D005859 ORTHO05D007576 2.5e-73 278.9 157 87.3
Lalb_Chr11g0064301 Lupinus albus HOM05D005859 ORTHO05D007576 2.5e-73 278.9 157 87.3
PSO063G7086 Papaver somniferum HOM05D005859 ORTHO05D007576 2.5e-73 278.9 159 85.5
Aa31LG11G4050 Aethionema arabicum HOM05D005859 ORTHO05D007576 3.3e-73 278.5 157 87.3
VMungo1309G0784 Vigna mungo HOM05D005859 ORTHO05D007576 3.3e-73 278.5 157 87.3
Phvul.009G104500 Phaseolus vulgaris HOM05D005859 ORTHO05D007576 4.3e-73 278.1 157 87.3
HanXRQChr09g0275211 Helianthus annuus HOM05D005859 ORTHO05D007576 7.3e-73 277.3 157 85.4
Ah.07g199340 Amaranthus hybridus HOM05D005859 ORTHO05D007576 1.6e-72 276.2 159 84.3
Carub.0006s2269 Capsella rubella HOM05D005859 ORTHO05D007576 2.1e-72 275.8 159 84.9
Glyma.04G078700 Glycine max HOM05D005859 ORTHO05D007576 2.1e-72 275.8 157 86.6
AL6G36490 Arabidopsis lyrata HOM05D005859 ORTHO05D007576 2.8e-72 275.4 159 84.9
AT5G24840 Arabidopsis thaliana HOM05D005859 ORTHO05D007576 2.8e-72 275.4 159 85.5
CSS0002423 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 2.8e-72 275.4 159 85.5
CSS0037116 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 2.8e-72 275.4 159 85.5
Cc09_g05860 Coffea canephora HOM05D005859 ORTHO05D007576 2.8e-72 275.4 156 86.5
Ca_15630_v3 Cicer arietinum L. HOM05D005859 ORTHO05D007576 4.7e-72 274.6 157 85.4
PGSC0003DMG400010428 Solanum tuberosum HOM05D005859 ORTHO05D007576 4.7e-72 274.6 159 84.9
A06p35610 Brassica napus HOM05D005859 ORTHO05D007576 6.1e-72 274.2 159 85.5
Thhalv10004821m.g Eutrema salsugineum HOM05D005859 ORTHO05D007576 6.1e-72 274.2 159 84.3
Solyc02g068650.2 Solanum lycopersicum HOM05D005859 ORTHO05D007576 6.1e-72 274.2 157 86.6
CAN.G149.19 Capsicum annuum HOM05D005859 ORTHO05D007576 8.0e-72 273.9 156 85.9
AUR62007184 Chenopodium quinoa HOM05D005859 ORTHO05D007576 8.0e-72 273.9 159 83.0
HPP92_010546 Vanilla planifolia HOM05D005859 ORTHO05D007576 8.0e-72 273.9 158 84.2
BolC7t44822H Brassica oleracea HOM05D005859 ORTHO05D008158 1.0e-71 273.5 159 84.9
EL10Ac5g12246 Beta vulgaris HOM05D005859 ORTHO05D007576 1.4e-71 273.1 159 83.6
Glyma.06G080300 Glycine max HOM05D005859 ORTHO05D007576 1.4e-71 273.1 157 86.0
C07p42930 Brassica napus HOM05D005859 ORTHO05D008158 1.8e-71 272.7 159 84.9
Lsat_1_v5_gn_5_41801 Lactuca sativa HOM05D005859 ORTHO05D007576 1.8e-71 272.7 159 83.0
Zm00001eb208790 Zea mays HOM05D005859 ORTHO05D007576 2.3e-71 272.3 159 82.4
CARHR188610 Cardamine hirsuta HOM05D005859 ORTHO05D007576 3.1e-71 271.9 159 83.6
Medtr3g109360 Medicago truncatula HOM05D005859 ORTHO05D007576 3.1e-71 271.9 158 84.2
Nitab4.5_0006282g0050 Nicotiana tabacum HOM05D005859 ORTHO05D007576 4.0e-71 271.6 158 85.4
Psat5g022960 Pisum sativum HOM05D005859 ORTHO05D007576 4.0e-71 271.6 158 82.9
BcaB04g19801 Brassica carinata HOM05D005859 ORTHO05D007576 5.2e-71 271.2 159 83.0
Nitab4.5_0003379g0070 Nicotiana tabacum HOM05D005859 ORTHO05D007576 6.8e-71 270.8 158 84.8
Sp2g22610 Schrenkiella parvula HOM05D005859 ORTHO05D007576 6.8e-71 270.8 159 84.3
Sopen02g017820 Solanum pennellii HOM05D005859 ORTHO05D007576 6.8e-71 270.8 158 85.4
TPR.G1368 Trifolium pratense HOM05D005859 ORTHO05D007576 6.8e-71 270.8 158 82.9
CSS0022235 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 1.5e-70 269.6 159 83.0
SalBow1G3786 Salvia bowleyana HOM05D005859 ORTHO05D007576 1.5e-70 269.6 158 83.5
unitig_21.g20313 Utricularia gibba HOM05D005859 ORTHO05D007576 1.3e-69 266.5 160 81.2
HPP92_010527 Vanilla planifolia HOM05D005859 ORTHO05D007576 8.3e-69 263.8 154 83.1
BcaC04g23549 Brassica carinata HOM05D005859 ORTHO05D007576 5.4e-68 261.2 160 80.0
SEGI_16955 Sequoiadendron giganteum HOM05D005859 ORTHO05D007576 7.8e-67 257.3 158 76.6
Mapoly0026s0057 Marchantia polymorpha HOM05D005859 ORTHO05D007576 1.2e-64 250.0 158 75.3
Pp3c24_9600 Physcomitrium patens HOM05D005859 ORTHO05D007576 2.8e-64 248.8 158 74.1
ATR0697G154 Amborella trichopoda HOM05D005859 ORTHO05D007576 6.2e-64 247.7 156 76.9
Peaxi162Scf00149g00014 Petunia axillaris HOM05D005859 ORTHO05D007576 6.2e-64 247.7 159 78.6
AagrBONN_evm.TU.Sc2ySwM_344.1368 Anthoceros agrestis HOM05D005859 ORTHO05D007576 2.4e-60 235.7 157 72.6
CBR_g63067 Chara braunii HOM05D005859 ORTHO05D007576 2.4e-60 235.7 157 69.4
SMO358G0125 Selaginella moellendorffii HOM05D005859 ORTHO05D007576 5.4e-60 234.6 157 70.7
MD15G1100000 Malus domestica HOM05D005859 ORTHO05D007576 1.7e-58 229.6 158 74.1
Cre07.g314550 Chlamydomonas reinhardtii HOM05D005859 ORTHO05D007576 2.3e-55 219.2 158 65.2
BolC9t53628H Brassica oleracea HOM05D005859 ORTHO05D007576 5.4e-52 208.0 119 80.7
MCO01G481 Micromonas commoda HOM05D005859 ORTHO05D007576 2.3e-50 202.6 157 59.9
GSVIVG01035552001 Vitis vinifera HOM05D005859 ORTHO05D007576 6.6e-50 201.1 152 70.4
CSS0005155 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 1.9e-49 199.5 160 68.1
CSS0033509 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 2.5e-49 199.1 109 87.2
HPP92_010638 Vanilla planifolia HOM05D005859 ORTHO05D007576 7.3e-49 197.6 119 79.8
Dinv07265 Davidia involucrata HOM05D005859 ORTHO05D007576 4.7e-48 194.9 113 84.1
AUR62018819 Chenopodium quinoa HOM05D005859 ORTHO05D007576 6.8e-47 191.0 159 63.5
HanXRQChr14g0440281 Helianthus annuus HOM05D005859 ORTHO05D007576 1.5e-46 189.9 103 89.3
HPP92_010585 Vanilla planifolia HOM05D005859 ORTHO05D007576 1.3e-45 186.8 101 90.1
CDE05G2856 Ceratophyllum demersum HOM05D005859 ORTHO05D007576 2.2e-45 186.0 97 90.7
PRCOL_00003713 Prasinoderma coloniale HOM05D005859 ORTHO05D007576 4.9e-45 184.9 157 58.0
Haze_26141 Corylus avellana HOM05D005859 ORTHO05D007576 3.0e-42 175.6 156 50.6
HPP92_010538 Vanilla planifolia HOM05D005859 ORTHO05D007576 5.1e-42 174.9 104 80.8
CSS0020153 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 2.4e-39 166.0 96 83.3
CSS0049229 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 2.4e-39 166.0 159 59.1
CSS0043283 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 2.0e-38 162.9 136 63.2
HPP92_010304 Vanilla planifolia HOM05D005859 ORTHO05D007576 6.4e-37 157.9 116 69.0
CSS0012487 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 2.7e-35 152.5 94 80.9
Os06g0236900 Oryza sativa ssp. japonica HOM05D005859 ORTHO05D007576 5.8e-30 134.8 81 77.8
BraA06t26486Z Brassica rapa HOM05D000880 ORTHO05D008158 1.1e-17 94.0 55 87.3
C09p07080 Brassica napus HOM05D000880 ORTHO05D008158 5.6e-17 91.7 56 80.4
A09p06400 Brassica napus HOM05D005859 ORTHO05D007576 6.5e-13 78.2 48 77.1
HPP92_010586 Vanilla planifolia HOM05D005859 ORTHO05D007576 8.4e-13 77.8 50 74.0
ATR1096G015 Amborella trichopoda HOM05D005859 ORTHO05D007576 7.1e-12 74.7 56 58.9
CBR_g38752 Chara braunii HOM05D005695 ORTHO05D007810 4.1e-07 58.9 165 27.9
Lsat_1_v5_gn_7_33441 Lactuca sativa HOM05D005695 ORTHO05D007810 6.9e-07 58.2 161 28.0
CANSAT54G1451 Cannabis sativa HOM05D005695 ORTHO05D007810 3.4e-06 55.8 100 33.0
GSVIVG01019305001 Vitis vinifera HOM05D005695 ORTHO05D007810 5.9e-06 55.1 167 27.5
Glyma.07G122300 Glycine max HOM05D005695 ORTHO05D007810 7.7e-06 54.7 165 26.7
Sc23g0004120 Simmondsia chinensis HOM05D005695 ORTHO05D007810 7.7e-06 54.7 167 27.5
Sp6g26560 Schrenkiella parvula HOM05D005695 ORTHO05D007810 1.0e-05 54.3 165 27.3


User provided reference genes

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