Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P291T19 Lonicera japonica HOM05D019427 ORTHO05D000022 1.7e-41 172.2 81 100.0
Lj2C374T9 Lonicera japonica HOM05D000155 ORTHO05D000022 1.4e-19 99.4 72 61.1
Lj1P1149T59 Lonicera japonica HOM05D012818 ORTHO05D000022 7.3e-13 77.0 51 72.5
Lj3P459T0 Lonicera japonica HOM05D019427 ORTHO05D029987 7.3e-13 77.0 54 57.4
Sopen10g006600 Solanum pennellii HOM05D000003 ORTHO05D001349 3.6e-12 74.7 70 50.0
Solyc06g082170.2 Solanum lycopersicum HOM05D000314 ORTHO05D000189 2.3e-11 72.0 72 48.6
Lj1g0013654 Lotus japonicus HOM05D000155 ORTHO05D000022 1.2e-10 69.7 57 54.4
Nitab4.5_0007388g0080 Nicotiana tabacum HOM05D000003 ORTHO05D000022 1.2e-10 69.7 72 45.8
CSS0032736 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.0e-10 68.9 78 37.2
QL08p061842 Quercus lobata HOM05D000003 ORTHO05D000004 3.4e-10 68.2 68 42.6
CSS0032702 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 4.4e-10 67.8 79 35.4
CSS0041590 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 5.8e-10 67.4 78 35.9
CSS0017504 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 7.5e-10 67.0 69 40.6
Actinidia35690 Actinidia chinensis HOM05D000003 ORTHO05D000022 2.9e-09 65.1 68 44.1
QL02p058259 Quercus lobata HOM05D000155 ORTHO05D000022 2.9e-09 65.1 64 42.2
QL93p0100_0664 Quercus lobata HOM05D000155 ORTHO05D000022 2.9e-09 65.1 64 42.2
CSS0036731 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 3.7e-09 64.7 71 35.2
CSS0038037 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 3.7e-09 64.7 78 32.1
COL.COLO4_19293 Corchorus olitorius HOM05D000155 ORTHO05D000022 3.7e-09 64.7 77 36.4
CSS0016144 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 4.9e-09 64.3 81 35.8
CSS0047834 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 4.9e-09 64.3 81 35.8
Lj1P688T36 Lonicera japonica HOM05D000155 ORTHO05D000022 4.9e-09 64.3 68 45.6
QL05p002397 Quercus lobata HOM05D000155 ORTHO05D000022 6.4e-09 63.9 60 45.0
AT5G42905 Arabidopsis thaliana HOM05D000003 ORTHO05D000022 8.3e-09 63.5 62 46.8
Lj1P685T53 Lonicera japonica HOM05D000155 ORTHO05D000022 8.3e-09 63.5 68 44.1
Lj8C62T5 Lonicera japonica HOM05D000003 ORTHO05D000022 1.1e-08 63.2 54 51.9
Actinidia37600 Actinidia chinensis HOM05D025569 ORTHO05D000022 1.4e-08 62.8 61 45.9
MBI16_g17459_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.4e-08 62.8 78 39.7
QL02p078400 Quercus lobata HOM05D000038 ORTHO05D000423 1.4e-08 62.8 68 45.6
QL03p010769 Quercus lobata HOM05D000155 ORTHO05D000022 1.4e-08 62.8 76 38.2
Atru.chr1.956 Acer truncatum HOM05D000003 ORTHO05D000006 1.9e-08 62.4 76 40.8
CSS0032111 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.9e-08 62.4 68 39.7
MBI05_g34740_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.9e-08 62.4 80 38.8
QL10p064615 Quercus lobata HOM05D000155 ORTHO05D000022 1.9e-08 62.4 71 42.3
Lj1P687T17 Lonicera japonica HOM05D000155 ORTHO05D000022 2.4e-08 62.0 68 44.1
Nitab4.5_0000357g0020 Nicotiana tabacum HOM05D000003 ORTHO05D000022 2.4e-08 62.0 77 42.9
Solyc07g056380.1 Solanum lycopersicum HOM05D000003 ORTHO05D000022 2.4e-08 62.0 71 42.3
CARHR213150 Cardamine hirsuta HOM05D000003 ORTHO05D000022 3.2e-08 61.6 65 46.2
MBI17_g43446_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.2e-08 61.6 73 43.8
Prupe.1G291700 Prunus persica HOM05D000061 ORTHO05D000050 3.2e-08 61.6 60 43.3
MBI16_g35230_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 4.1e-08 61.2 66 43.9
MBI19_g04943_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 4.1e-08 61.2 76 38.2
Nitab4.5_0003867g0080 Nicotiana tabacum HOM05D000003 ORTHO05D000022 4.1e-08 61.2 72 41.7
CSS0009370 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 5.4e-08 60.8 78 30.8
QL09p016348 Quercus lobata HOM05D000155 ORTHO05D000022 5.4e-08 60.8 76 38.2
Lj8C275T19 Lonicera japonica HOM05D016027 ORTHO05D000022 7.1e-08 60.5 52 50.0
MBI02_g20284_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 7.1e-08 60.5 72 44.4
MBI18_g13610_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 7.1e-08 60.5 66 40.9
MBI14_g13525_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 9.2e-08 60.1 66 40.9
Peaxi162Scf00129g00613 Petunia axillaris HOM05D000003 ORTHO05D026350 9.2e-08 60.1 70 45.7
Prupe.4G161900 Prunus persica HOM05D000003 ORTHO05D000022 9.2e-08 60.1 69 39.1
TWI81G0242 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 9.2e-08 60.1 66 45.5
CSS0020179 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.2e-07 59.7 77 35.1
MBI15_g44354_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.2e-07 59.7 74 35.1
SHI10451 Sapria himalayana HOM05D000155 ORTHO05D000022 1.2e-07 59.7 70 37.1
arahy.Tifrunner.gnm1.ann1.WYFF13 Arachis hypogaea HOM05D000155 ORTHO05D000022 1.6e-07 59.3 73 37.0
CARHR181910 Cardamine hirsuta HOM05D000003 ORTHO05D000022 1.6e-07 59.3 59 49.2
Peaxi162Scf00015g00940 Petunia axillaris HOM05D000145 ORTHO05D000115 1.6e-07 59.3 70 42.9
QL02p075356 Quercus lobata HOM05D000155 ORTHO05D000022 1.6e-07 59.3 76 38.2
Atru.chr1.776 Acer truncatum HOM05D000003 ORTHO05D000004 2.1e-07 58.9 62 43.5
CARHR054120 Cardamine hirsuta HOM05D000003 ORTHO05D000022 2.1e-07 58.9 60 46.7
Nitab4.5_0007388g0060 Nicotiana tabacum HOM05D000003 ORTHO05D000022 2.1e-07 58.9 62 45.2
QL04p017747 Quercus lobata HOM05D000155 ORTHO05D000022 2.1e-07 58.9 66 43.9
QL07p015378 Quercus lobata HOM05D000155 ORTHO05D000022 2.1e-07 58.9 64 37.5
SHI38779 Sapria himalayana HOM05D000155 ORTHO05D000022 2.1e-07 58.9 58 46.6
MBI11_g29574_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.7e-07 58.5 64 40.6
MBI14_g06611_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.7e-07 58.5 71 39.4
MBI15_g37788_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.7e-07 58.5 74 35.1
Prupe.6G118100 Prunus persica HOM05D000003 ORTHO05D000022 2.7e-07 58.5 69 39.1
Prupe.6G201000 Prunus persica HOM05D000003 ORTHO05D000022 2.7e-07 58.5 69 39.1
PGR031G0166 Punica granatum HOM05D000155 ORTHO05D000022 2.7e-07 58.5 58 44.8
Atru.chr4.1146 Acer truncatum HOM05D000003 ORTHO05D000022 4.6e-07 57.8 72 40.3
MBI13_g15302_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 4.6e-07 57.8 77 36.4
Prupe.5G085900 Prunus persica HOM05D000003 ORTHO05D000022 4.6e-07 57.8 69 39.1
MBI16_g24671_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 6.0e-07 57.4 74 39.2
CSS0014386 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 7.8e-07 57.0 61 37.7
CSS0029354 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 7.8e-07 57.0 71 31.0
COL.COLO4_33037 Corchorus olitorius HOM05D000155 ORTHO05D000022 7.8e-07 57.0 70 37.1
Lj1C608G3 Lonicera japonica HOM05D019427 ORTHO05D029987 7.8e-07 57.0 40 60.0
MBI18_g13460_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 7.8e-07 57.0 67 40.3
MBI19_g05224_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 7.8e-07 57.0 71 40.8
arahy.Tifrunner.gnm1.ann1.0Q53RJ Arachis hypogaea HOM05D000155 ORTHO05D000022 1.0e-06 56.6 62 40.3
CARHR121910 Cardamine hirsuta HOM05D000155 ORTHO05D000022 1.0e-06 56.6 69 42.0
MBI07_g09266_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.0e-06 56.6 68 39.7
MBI19_g34996_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.0e-06 56.6 71 38.0
QL08p041434 Quercus lobata HOM05D000419 ORTHO05D001071 1.0e-06 56.6 51 47.1
Sabra04G0049100 Salix brachista HOM05D000003 ORTHO05D000007 1.0e-06 56.6 61 41.0
Sabra08G0134900 Salix brachista HOM05D000003 ORTHO05D000006 1.0e-06 56.6 61 41.0
Sabra09G0015300 Salix brachista HOM05D000003 ORTHO05D000006 1.0e-06 56.6 61 41.0
Atru.chr3.666 Acer truncatum HOM05D000155 ORTHO05D000022 1.3e-06 56.2 75 37.3
CSS0038564 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.3e-06 56.2 68 35.3
COL.COLO4_27635 Corchorus olitorius HOM05D000003 ORTHO05D000022 1.3e-06 56.2 68 42.6
MBI14_g01722_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.3e-06 56.2 67 38.8
MBI18_g23784_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.3e-06 56.2 71 38.0
Peaxi162Scf01062g00023 Petunia axillaris HOM05D001426 ORTHO05D001389 1.3e-06 56.2 66 36.4
QL07p021184 Quercus lobata HOM05D000003 ORTHO05D000022 1.3e-06 56.2 62 41.9
TAR673G0003 Trochodendron aralioides HOM05D000155 ORTHO05D000022 1.3e-06 56.2 55 45.5
AUR62014524 Chenopodium quinoa HOM05D001049 ORTHO05D005951 1.7e-06 55.8 72 36.1
FvH4_2g15861 Fragaria vesca HOM05D000003 ORTHO05D000022 1.7e-06 55.8 56 42.9
Glyma.07G238550 Glycine max HOM05D000003 ORTHO05D000004 1.7e-06 55.8 68 36.8
RcHm_v2.0_Chr7g0181271 Rosa chinensis HOM05D000003 ORTHO05D000022 1.7e-06 55.8 56 42.9
Atru.chr11.1243 Acer truncatum HOM05D000003 ORTHO05D000022 2.3e-06 55.5 68 39.7
CSS0009143 Camellia sinensis var. sinensis HOM05D000155 ORTHO05D000022 2.3e-06 55.5 68 39.7
Cc05_g02910 Coffea canephora HOM05D000003 ORTHO05D000004 2.3e-06 55.5 67 41.8
MBI14_g23362_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.3e-06 55.5 80 35.0
TAR014G0002 Trochodendron aralioides HOM05D000155 ORTHO05D000022 2.3e-06 55.5 51 45.1
ATR0626G376 Amborella trichopoda HOM05D004588 ORTHO05D005365 3.0e-06 55.1 68 39.7
COL.COLO4_23635 Corchorus olitorius HOM05D000155 ORTHO05D000022 3.0e-06 55.1 76 35.5
MBI15_g39376_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.0e-06 55.1 66 39.4
MBI19_g04941_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.0e-06 55.1 73 35.6
Medtr7g056410 Medicago truncatula HOM05D005458 ORTHO05D005672 3.0e-06 55.1 69 42.0
Psat3g207120 Pisum sativum HOM05D000003 ORTHO05D000022 3.0e-06 55.1 73 35.6
Atru.chr4.1844 Acer truncatum HOM05D000003 ORTHO05D000022 3.9e-06 54.7 66 43.9
Atru.chr7.120 Acer truncatum HOM05D000003 ORTHO05D000004 3.9e-06 54.7 74 37.8
Atru.chr7.713 Acer truncatum HOM05D000003 ORTHO05D000004 3.9e-06 54.7 73 39.7
Atru.chr9.1441 Acer truncatum HOM05D000003 ORTHO05D000022 3.9e-06 54.7 63 44.4
arahy.Tifrunner.gnm1.ann1.G0IJW6 Arachis hypogaea HOM05D000155 ORTHO05D000022 3.9e-06 54.7 68 38.2
CARHR105380 Cardamine hirsuta HOM05D000003 ORTHO05D000022 3.9e-06 54.7 63 44.4
Gorai.013G086700 Gossypium raimondii HOM05D000003 ORTHO05D000022 3.9e-06 54.7 59 42.4
MBI01_g24432_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.9e-06 54.7 69 43.5
MBI02_g38177_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.9e-06 54.7 64 37.5
MBI09_g37944_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.9e-06 54.7 72 38.9
MBI16_g05639_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.9e-06 54.7 71 39.4
MBI16_g11026_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.9e-06 54.7 72 36.1
MBI16_g11674_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.9e-06 54.7 72 37.5
Atru.chr10.713 Acer truncatum HOM05D000003 ORTHO05D000022 5.1e-06 54.3 64 43.8
Actinidia31833 Actinidia chinensis HOM05D000155 ORTHO05D000022 5.1e-06 54.3 71 36.6
CSS0033039 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 5.1e-06 54.3 62 32.3
COL.COLO4_03980 Corchorus olitorius HOM05D000155 ORTHO05D000022 5.1e-06 54.3 57 42.1
FvH4_5g38601 Fragaria vesca HOM05D000003 ORTHO05D000651 5.1e-06 54.3 70 37.1
MBI01_g21238_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 5.1e-06 54.3 75 37.3
PGR119G2425 Punica granatum HOM05D000003 ORTHO05D000022 5.1e-06 54.3 58 39.7
QL01p016208 Quercus lobata HOM05D000155 ORTHO05D000022 5.1e-06 54.3 70 34.3
QL01p016211 Quercus lobata HOM05D000155 ORTHO05D000022 5.1e-06 54.3 70 34.3
MBI05_g34248_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 6.6e-06 53.9 63 39.7
MBI15_g25771_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 6.6e-06 53.9 73 34.2
Peaxi162Scf00210g00097 Petunia axillaris HOM05D001426 ORTHO05D001389 6.6e-06 53.9 62 40.3
Psat7g156400 Pisum sativum HOM05D000003 ORTHO05D017882 6.6e-06 53.9 71 36.6
Atru.chr10.629 Acer truncatum HOM05D000003 ORTHO05D000004 8.6e-06 53.5 67 37.3
Atru.chr9.658 Acer truncatum HOM05D000003 ORTHO05D000022 8.6e-06 53.5 62 41.9
Actinidia31778 Actinidia chinensis HOM05D000155 ORTHO05D000022 8.6e-06 53.5 71 35.2
arahy.Tifrunner.gnm1.ann1.3ZGA1D Arachis hypogaea HOM05D000155 ORTHO05D000022 8.6e-06 53.5 68 36.8
CARHR145030 Cardamine hirsuta HOM05D000003 ORTHO05D000022 8.6e-06 53.5 62 43.5
CiPaw.04G193300 Carya illinoinensis HOM05D000053 ORTHO05D000035 8.6e-06 53.5 56 44.6
MBI07_g24347_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 8.6e-06 53.5 64 35.9
MBI07_g35365_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 8.6e-06 53.5 70 40.0
MBI08_g23501_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 8.6e-06 53.5 63 41.3
MBI11_g02053_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 8.6e-06 53.5 66 40.9
MBI15_g26834_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 8.6e-06 53.5 71 35.2
MBI16_g37125_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 8.6e-06 53.5 82 32.9
QL01p013568 Quercus lobata HOM05D000155 ORTHO05D000022 8.6e-06 53.5 51 45.1
QL08p016074 Quercus lobata HOM05D000013 ORTHO05D000011 8.6e-06 53.5 61 42.6


User provided reference genes

Program Settings