Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P1235T102 Lonicera japonica HOM05D007194 ORTHO05D009182 6.3e-185 650.6 318 100.0
Lj2P1233T109 Lonicera japonica HOM05D007194 ORTHO05D009182 6.0e-135 484.6 244 97.5
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 1.7e-97 360.1 238 78.2
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 1.4e-96 357.1 205 87.8
arahy.Tifrunner.gnm1.ann1.6A3TYM Arachis hypogaea HOM05D007194 ORTHO05D009182 2.1e-95 353.2 239 77.8
Dinv06723 Davidia involucrata HOM05D007194 ORTHO05D009182 3.4e-90 335.9 175 95.4
DCAR_032453 Daucus carota HOM05D007194 ORTHO05D009182 4.9e-89 332.0 175 94.9
CAN.G1690.2 Capsicum annuum HOM05D007194 ORTHO05D009182 3.9e-86 322.4 175 92.0
Lsat_1_v5_gn_7_100841 Lactuca sativa HOM05D007194 ORTHO05D009182 3.9e-86 322.4 242 71.9
Lsat_1_v5_gn_7_99901 Lactuca sativa HOM05D007194 ORTHO05D009182 3.9e-86 322.4 242 71.9
RcHm_v2.0_MTg0498961 Rosa chinensis HOM05D007194 ORTHO05D009182 3.9e-86 322.4 175 92.6
CANSAT16G0047 Cannabis sativa HOM05D007194 ORTHO05D009182 1.1e-85 320.9 171 94.2
Nn1g09980 Nelumbo nucifera HOM05D007194 ORTHO05D009182 4.3e-85 318.9 169 94.7
Cfa021340 Carpinus fangiana HOM05D007194 ORTHO05D009182 7.4e-85 318.2 175 91.4
Aqoxy3G01137 Aquilegia oxysepala HOM05D007194 ORTHO05D009182 1.1e-83 314.3 179 88.8
A04p09540 Brassica napus HOM05D007194 ORTHO05D009182 1.1e-83 314.3 175 90.9
BolSC28t60320H Brassica oleracea HOM05D007194 ORTHO05D009182 1.1e-83 314.3 175 90.9
BraSC48t46300Z Brassica rapa HOM05D007194 ORTHO05D009182 1.1e-83 314.3 175 90.9
Gorai.001G165900 Gossypium raimondii HOM05D007194 ORTHO05D009182 1.8e-83 313.5 175 90.3
Sp3g25540 Schrenkiella parvula HOM05D007194 ORTHO05D009182 9.0e-83 311.2 175 90.3
AT2G07771 Arabidopsis thaliana HOM05D007194 ORTHO05D009182 4.5e-82 308.9 168 92.3
ATMG00900 Arabidopsis thaliana HOM05D007194 ORTHO05D009182 4.5e-82 308.9 168 92.3
TWI15G0311 Tripterygium wilfordii HOM05D007194 ORTHO05D009182 4.5e-82 308.9 190 83.7
HanXRQChr16g0504451 Helianthus annuus HOM05D007194 ORTHO05D009182 5.8e-82 308.5 175 89.7
HanXRQMTg0579111 Helianthus annuus HOM05D007194 ORTHO05D009182 5.8e-82 308.5 175 89.7
CARHR283160 Cardamine hirsuta HOM05D007194 ORTHO05D009182 1.0e-81 307.8 168 91.7
AL3G44600 Arabidopsis lyrata HOM05D007194 ORTHO05D009182 3.8e-81 305.8 168 91.7
Lsat_1_v5_gn_1_67041 Lactuca sativa HOM05D007194 ORTHO05D009182 4.9e-81 305.4 171 89.5
Solyc00g500242.1 Solanum lycopersicum HOM05D007194 ORTHO05D009182 8.4e-81 304.7 175 87.4
Solyc00g500277.1 Solanum lycopersicum HOM05D007194 ORTHO05D009182 8.4e-81 304.7 175 87.4
CAN.G85.20 Capsicum annuum HOM05D007194 ORTHO05D009182 7.1e-80 301.6 175 88.0
Nitab4.5_0000031g0190 Nicotiana tabacum HOM05D007194 ORTHO05D009182 6.0e-79 298.5 169 88.8
ECA039G0021 Erigeron canadensis HOM05D007194 ORTHO05D009182 1.3e-78 297.4 155 94.8
Aa31csc239G110 Aethionema arabicum HOM05D007194 ORTHO05D009182 1.8e-78 297.0 168 89.3
arahy.Tifrunner.gnm1.ann1.14Z8E4 Arachis hypogaea HOM05D007194 ORTHO05D009182 2.3e-78 296.6 165 90.9
arahy.Tifrunner.gnm1.ann1.F9VS0T Arachis hypogaea HOM05D007194 ORTHO05D009182 2.3e-78 296.6 165 90.9
arahy.Tifrunner.gnm1.ann1.SBV1ZL Arachis hypogaea HOM05D007194 ORTHO05D009182 2.3e-78 296.6 165 90.9
LjContig00315g0023372 Lotus japonicus HOM05D007194 ORTHO05D009182 2.3e-78 296.6 165 90.9
TPR.G39619 Trifolium pratense HOM05D007194 ORTHO05D009182 1.1e-77 294.3 170 88.8
SHI36965 Sapria himalayana HOM05D007194 ORTHO05D009182 4.3e-77 292.4 174 85.6
Lalb_Chr00c24g0406951 Lupinus albus HOM05D007194 ORTHO05D009182 1.3e-76 290.8 170 87.1
SGA_v2.0_scaffold400G50840 Striga asiatica HOM05D007194 ORTHO05D009182 1.6e-76 290.4 200 76.0
Lalb_Chr17g0337381 Lupinus albus HOM05D007194 ORTHO05D009182 6.3e-76 288.5 170 85.9
Sed0000988 Sechium edule HOM05D007194 ORTHO05D009182 1.5e-74 283.9 157 91.1
Sed0021793 Sechium edule HOM05D007194 ORTHO05D009182 1.5e-74 283.9 157 91.1
Eucgr.I01863 Eucalyptus grandis HOM05D007194 ORTHO05D009182 5.9e-74 282.0 156 91.0
EL10Ac7g17455 Beta vulgaris HOM05D007194 ORTHO05D009182 1.7e-73 280.4 160 88.8
Lsat_1_v5_gn_6_37840 Lactuca sativa HOM05D007194 ORTHO05D009182 1.1e-72 277.7 162 85.8
SHI36846 Sapria himalayana HOM05D007194 ORTHO05D009182 1.1e-72 277.7 169 84.0
Ah.10g028440 Amaranthus hybridus HOM05D007194 ORTHO05D009182 1.4e-72 277.3 160 89.4
Psat0s922g0240 Pisum sativum HOM05D007194 ORTHO05D009182 2.1e-71 273.5 153 90.2
Prupe.1G175300 Prunus persica HOM05D007194 ORTHO05D009182 1.4e-70 270.8 175 81.7
Lsat_1_v5_gn_4_20401 Lactuca sativa HOM05D007194 ORTHO05D009182 1.5e-69 267.3 157 84.1
arahy.Tifrunner.gnm1.ann1.GM5VKV Arachis hypogaea HOM05D007194 ORTHO05D009182 7.4e-69 265.0 165 83.6
AT2G07681 Arabidopsis thaliana HOM05D007194 ORTHO05D009182 4.5e-66 255.8 167 81.4
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 1.0e-65 254.6 133 95.5
Lj5P380T4 Lonicera japonica HOM05D007194 ORTHO05D009182 1.2e-63 247.7 155 81.3
arahy.Tifrunner.gnm1.ann1.UX1VFS Arachis hypogaea HOM05D007194 ORTHO05D009182 2.6e-61 240.0 133 91.0
Sopen00g002730 Solanum pennellii HOM05D007194 ORTHO05D009182 5.7e-61 238.8 134 86.6
BolSC28t60390H Brassica oleracea HOM05D007194 ORTHO05D009182 6.3e-60 235.3 128 90.6
BraSC48t46335Z Brassica rapa HOM05D007194 ORTHO05D009182 6.3e-60 235.3 128 90.6
EL10Ac8g19071 Beta vulgaris HOM05D007194 ORTHO05D009182 1.4e-59 234.2 139 86.3
Nitab4.5_0001646g0030 Nicotiana tabacum HOM05D007194 ORTHO05D009182 3.1e-59 233.0 130 90.8
ATR0693G113 Amborella trichopoda HOM05D007194 ORTHO05D009182 4.5e-58 229.2 143 82.5
Nitab4.5_0006806g0100 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.9e-56 223.8 178 69.7
BolSC28t60422H Brassica oleracea HOM05D007194 ORTHO05D009182 3.9e-54 216.1 128 86.7
QL93p0053_0961 Quercus lobata HOM05D007194 ORTHO05D009182 4.4e-53 212.6 112 92.9
Nitab4.5_0001152g0940 Nicotiana tabacum HOM05D007194 ORTHO05D009182 9.7e-53 211.5 128 80.5
Nitab4.5_0002418g0160 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.4e-51 206.8 205 57.1
Nitab4.5_0003083g0040 Nicotiana tabacum HOM05D007194 ORTHO05D008899 3.8e-49 199.5 109 91.7
SalBow1G0339 Salvia bowleyana HOM05D007194 ORTHO05D009182 1.9e-48 197.2 109 89.9
CAN.G1542.2 Capsicum annuum HOM05D007194 ORTHO05D009182 5.5e-48 195.7 118 83.1
Nitab4.5_0012158g0050 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.2e-47 194.5 135 76.3
Lsat_1_v5_gn_5_17681 Lactuca sativa HOM05D007194 ORTHO05D009182 3.3e-45 186.4 241 49.4
Lj1P486T6 Lonicera japonica HOM05D007194 ORTHO05D009182 4.4e-45 186.0 108 87.0
Ca_14744_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 2.5e-40 170.2 88 94.3
CAN.G1134.4 Capsicum annuum HOM05D007194 ORTHO05D009182 4.7e-39 166.0 110 78.2
Gohir.A08G085962 Gossypium hirsutum HOM05D007194 ORTHO05D009182 1.5e-37 161.0 177 56.5
SHI26663 Sapria himalayana HOM05D007194 ORTHO05D009182 1.3e-36 157.9 101 83.2
CAN.G889.9 Capsicum annuum HOM05D007194 ORTHO05D009182 1.8e-35 154.1 94 85.1
Glyma.19G075000 Glycine max HOM05D007194 ORTHO05D009182 1.3e-33 147.9 73 97.3
CAN.G1001.43 Capsicum annuum HOM05D000927 ORTHO05D000850 2.3e-33 147.1 77 90.9
TAR625G1253 Trochodendron aralioides HOM05D007194 ORTHO05D009182 3.8e-33 146.4 80 90.0
CAN.G122.10 Capsicum annuum HOM05D007194 ORTHO05D009182 8.6e-33 145.2 75 93.3
Sopen01g007230 Solanum pennellii HOM05D007194 ORTHO05D009182 6.8e-30 135.6 72 88.9
CAN.G78.2 Capsicum annuum HOM05D007194 ORTHO05D009182 2.0e-29 134.0 68 94.1
Gohir.A02G088502 Gossypium hirsutum HOM05D007194 ORTHO05D009182 1.3e-28 131.3 69 89.9
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 1.3e-25 121.3 79 78.5
Peaxi162Scf00174g01622 Petunia axillaris HOM05D000219 ORTHO05D000226 1.9e-24 117.5 60 95.0
Manes.06G014501 Manihot esculenta HOM05D007194 ORTHO05D009182 3.6e-23 113.2 65 84.6
Solyc12g035840.1 Solanum lycopersicum HOM05D007194 ORTHO05D009182 3.6e-23 113.2 69 82.6
Haze_27474 Corylus avellana HOM05D007194 ORTHO05D009182 6.0e-18 95.9 94 50.0
HanXRQChr05g0135281 Helianthus annuus HOM05D007194 ORTHO05D009182 1.3e-17 94.7 54 85.2
EL10Ac8g19070 Beta vulgaris HOM05D007194 ORTHO05D009182 8.6e-17 92.0 54 81.5
Nitab4.5_0000859g0080 Nicotiana tabacum HOM05D000540 ORTHO05D008899 1.1e-16 91.7 54 85.2
CAN.G380.6 Capsicum annuum HOM05D007194 ORTHO05D009182 8.9e-14 82.0 55 76.4
SHI24632 Sapria himalayana HOM05D007194 ORTHO05D009182 5.4e-11 72.8 138 38.4
Aqoxy4G01620 Aquilegia oxysepala HOM05D007194 ORTHO05D009182 3.5e-10 70.1 50 74.0
SHI24634 Sapria himalayana HOM05D007194 ORTHO05D009182 4.6e-10 69.7 129 41.1
Phvul.007G104600 Phaseolus vulgaris HOM05D007194 ORTHO05D009182 2.3e-09 67.4 46 76.1
PGSC0003DMG400042571 Solanum tuberosum HOM05D007194 ORTHO05D009182 5.1e-09 66.2 44 77.3


User provided reference genes

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