Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P1112T20 Lonicera japonica HOM05D005229 ORTHO05D006378 1.0e-117 426.8 215 100.0
Oeu013526.1 Olea europaea HOM05D005229 ORTHO05D006378 4.6e-99 364.8 215 86.5
Oeu025298.1 Olea europaea HOM05D005229 ORTHO05D006378 6.1e-99 364.4 215 86.5
Peaxi162Scf00841g00210 Petunia axillaris HOM05D005229 ORTHO05D006378 6.1e-99 364.4 216 85.2
HanXRQChr12g0363961 Helianthus annuus HOM05D005229 ORTHO05D006378 1.8e-98 362.8 215 85.1
DCAR_012704 Daucus carota HOM05D005229 ORTHO05D006378 2.3e-98 362.5 211 84.4
ECA236G3288 Erigeron canadensis HOM05D005229 ORTHO05D006378 3.9e-98 361.7 215 85.1
SGA_v2.0_scaffold29G12061 Striga asiatica HOM05D005229 ORTHO05D006378 5.1e-98 361.3 211 84.8
TAR365G0963 Trochodendron aralioides HOM05D005229 ORTHO05D006378 5.1e-98 361.3 215 85.6
Migut.D00776 Erythranthe guttata HOM05D005229 ORTHO05D006378 6.7e-98 360.9 215 82.8
DCAR_018610 Daucus carota HOM05D005229 ORTHO05D006378 1.5e-97 359.8 215 84.2
Sabra14G0134400 Salix brachista HOM05D005229 ORTHO05D006378 2.0e-97 359.4 215 86.0
vmacro14690 Vaccinium macrocarpon HOM05D005229 ORTHO05D006378 2.0e-97 359.4 215 84.7
QL01p048658 Quercus lobata HOM05D005229 ORTHO05D006378 2.5e-97 359.0 214 85.5
MSTRG.17960 Avicennia marina HOM05D005229 ORTHO05D006378 3.3e-97 358.6 215 84.7
unitig_60.g25573 Utricularia gibba HOM05D005229 ORTHO05D006378 4.3e-97 358.2 215 84.7
HanXRQChr08g0231801 Helianthus annuus HOM05D005229 ORTHO05D006378 7.4e-97 357.5 216 84.7
Nn1g09761 Nelumbo nucifera HOM05D005229 ORTHO05D006378 7.4e-97 357.5 215 83.7
Ciclev10016637m.g Citrus clementina HOM05D005229 ORTHO05D006378 1.3e-96 356.7 215 84.2
TWI36G1337 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 1.3e-96 356.7 215 84.2
SalBow3G3798 Salvia bowleyana HOM05D005229 ORTHO05D006378 2.8e-96 355.5 215 83.3
MSTRG.12743 Avicennia marina HOM05D005229 ORTHO05D006378 3.7e-96 355.1 215 84.2
Cpa.g.sc8.42 Carica papaya HOM05D005229 ORTHO05D006378 3.7e-96 355.1 215 83.3
Potri.002G239700 Populus trichocarpa HOM05D005229 ORTHO05D006378 3.7e-96 355.1 215 83.7
Potri.014G175600 Populus trichocarpa HOM05D005229 ORTHO05D006378 3.7e-96 355.1 215 83.7
PGR083G1330 Punica granatum HOM05D005229 ORTHO05D006378 4.8e-96 354.8 218 83.0
unitig_0.g420 Utricularia gibba HOM05D005229 ORTHO05D006378 4.8e-96 354.8 216 84.3
Rhsim01G0247800 Rhododendron simsii HOM05D005229 ORTHO05D006378 8.2e-96 354.0 211 83.4
Lsat_1_v5_gn_8_98481 Lactuca sativa HOM05D005229 ORTHO05D006378 1.1e-95 353.6 215 82.8
Prupe.6G361000 Prunus persica HOM05D005229 ORTHO05D006378 1.1e-95 353.6 216 84.7
TWI18G1321 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 1.8e-95 352.8 215 83.7
CAN.G874.38 Capsicum annuum HOM05D005229 ORTHO05D006378 3.1e-95 352.1 217 83.4
CAN.G874.39 Capsicum annuum HOM05D005229 ORTHO05D006378 3.1e-95 352.1 217 83.4
MBI07_g06134_MAGBIO Magnolia biondii HOM05D005229 ORTHO05D006378 4.1e-95 351.7 211 82.9
Solyc06g082940.3 Solanum lycopersicum HOM05D005229 ORTHO05D006378 6.9e-95 350.9 217 83.4
COL.COLO4_07353 Corchorus olitorius HOM05D005229 ORTHO05D006378 1.2e-94 350.1 215 80.9
Thecc.01G207800 Theobroma cacao HOM05D005229 ORTHO05D006378 1.5e-94 349.7 215 81.9
Actinidia34531 Actinidia chinensis HOM05D005229 ORTHO05D006378 2.6e-94 349.0 216 82.4
CiPaw.07G079800 Carya illinoinensis HOM05D005229 ORTHO05D006378 2.6e-94 349.0 215 82.3
ECA247G0242 Erigeron canadensis HOM05D005229 ORTHO05D006378 2.6e-94 349.0 217 83.4
Haze_04550 Corylus avellana HOM05D005229 ORTHO05D006378 4.5e-94 348.2 215 82.3
Lsat_1_v5_gn_9_16861 Lactuca sativa HOM05D005229 ORTHO05D006378 7.7e-94 347.4 216 81.9
THA.LOC104808816 Tarenaya hassleriana HOM05D005229 ORTHO05D006378 7.7e-94 347.4 216 82.4
Cfa006268 Carpinus fangiana HOM05D005229 ORTHO05D006378 1.0e-93 347.1 215 81.4
Sabra02G0182500 Salix brachista HOM05D005229 ORTHO05D006378 1.0e-93 347.1 216 82.9
Aa31LG9G5690 Aethionema arabicum HOM05D005229 ORTHO05D006378 1.3e-93 346.7 217 81.1
Gohir.D07G168100 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.3e-93 346.7 211 81.0
Sopen06g034330 Solanum pennellii HOM05D005229 ORTHO05D006378 1.3e-93 346.7 217 82.0
PGSC0003DMG400027671 Solanum tuberosum HOM05D005229 ORTHO05D006378 1.3e-93 346.7 217 82.0
PGSC0003DMG400027672 Solanum tuberosum HOM05D005229 ORTHO05D006378 1.3e-93 346.7 212 82.5
GSVIVG01019114001 Vitis vinifera HOM05D005229 ORTHO05D006378 1.3e-93 346.7 218 82.1
FAN05G0704 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.7e-93 346.3 215 83.3
Manes.12G055600 Manihot esculenta HOM05D005229 ORTHO05D006378 1.7e-93 346.3 216 81.0
Sopen06g034340 Solanum pennellii HOM05D005229 ORTHO05D006378 1.7e-93 346.3 217 82.0
Thhalv10026195m.g Eutrema salsugineum HOM05D005229 ORTHO05D006378 2.9e-93 345.5 216 81.9
Atru.chr6.3527 Acer truncatum HOM05D005229 ORTHO05D006378 3.8e-93 345.1 215 80.0
Sp7g09420 Schrenkiella parvula HOM05D005229 ORTHO05D006378 3.8e-93 345.1 216 81.5
Gohir.D07G094300 Gossypium hirsutum HOM05D005229 ORTHO05D006378 5.0e-93 344.7 211 80.6
Solyc06g082950.4 Solanum lycopersicum HOM05D005229 ORTHO05D006378 5.0e-93 344.7 217 81.1
A04p09140 Brassica napus HOM05D005229 ORTHO05D006378 6.5e-93 344.4 216 81.5
Glyma.18G241700 Glycine max HOM05D005229 ORTHO05D006378 6.5e-93 344.4 216 83.3
Gohir.A07G160500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 6.5e-93 344.4 211 80.6
Gorai.001G101200 Gossypium raimondii HOM05D005229 ORTHO05D006378 6.5e-93 344.4 211 80.1
RcHm_v2.0_Chr3g0447921 Rosa chinensis HOM05D005229 ORTHO05D006378 8.5e-93 344.0 215 83.3
FAN02G4095 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.1e-92 343.6 215 82.8
Lalb_Chr19g0127611 Lupinus albus HOM05D005229 ORTHO05D006378 1.1e-92 343.6 212 84.0
Aqoxy2G04070 Aquilegia oxysepala HOM05D005229 ORTHO05D006378 1.9e-92 342.8 211 82.0
BcaC02g09463 Brassica carinata HOM05D005229 ORTHO05D006378 1.9e-92 342.8 216 81.0
C04p43050 Brassica napus HOM05D005229 ORTHO05D006378 1.9e-92 342.8 216 81.0
BolC4t25883H Brassica oleracea HOM05D005229 ORTHO05D006378 1.9e-92 342.8 216 81.0
AUR62006659 Chenopodium quinoa HOM05D005229 ORTHO05D006378 1.9e-92 342.8 215 80.9
MD04G1244400 Malus domestica HOM05D005229 ORTHO05D006378 2.5e-92 342.4 217 81.6
Thecc.05G199500 Theobroma cacao HOM05D005229 ORTHO05D006378 2.5e-92 342.4 215 81.4
BcaB03g16154 Brassica carinata HOM05D005229 ORTHO05D006378 3.2e-92 342.0 216 81.5
Gorai.N002100 Gossypium raimondii HOM05D005229 ORTHO05D006378 3.2e-92 342.0 211 81.5
MD12G1260300 Malus domestica HOM05D005229 ORTHO05D006378 3.2e-92 342.0 217 81.1
A08p07360 Brassica napus HOM05D005229 ORTHO05D006378 4.2e-92 341.7 214 79.4
BraA08t32752Z Brassica rapa HOM05D005229 ORTHO05D006378 4.2e-92 341.7 214 79.4
Cc01_g15890 Coffea canephora HOM05D005229 ORTHO05D006378 5.5e-92 341.3 215 80.5
Glyma.09G250800 Glycine max HOM05D005229 ORTHO05D006378 5.5e-92 341.3 215 81.4
FvH4_6g00530 Fragaria vesca HOM05D005229 ORTHO05D006378 7.2e-92 340.9 215 81.9
FAN09G4314 Fragaria x ananassa HOM05D005229 ORTHO05D006378 7.2e-92 340.9 215 81.9
CARHR218150 Cardamine hirsuta HOM05D005229 ORTHO05D006378 9.4e-92 340.5 216 80.6
BcaB04g17739 Brassica carinata HOM05D005229 ORTHO05D006378 1.2e-91 340.1 216 79.6
ClCG11G010740 Citrullus lanatus HOM05D005229 ORTHO05D006378 1.2e-91 340.1 211 80.6
MELO3C008731.2 Cucumis melo HOM05D005229 ORTHO05D006378 1.2e-91 340.1 211 80.6
VMungo1383G0609 Vigna mungo HOM05D005229 ORTHO05D006378 1.2e-91 340.1 214 81.3
AL9U11740 Arabidopsis lyrata HOM05D005229 ORTHO05D006378 1.6e-91 339.7 216 80.6
BolC8t47751H Brassica oleracea HOM05D005229 ORTHO05D006378 1.6e-91 339.7 214 79.0
Gohir.A07G089500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.6e-91 339.7 215 79.5
AT4G12800 Arabidopsis thaliana HOM05D005229 ORTHO05D006378 2.1e-91 339.3 216 80.1
C08p09050 Brassica napus HOM05D005229 ORTHO05D006378 2.1e-91 339.3 214 78.5
AUR62000314 Chenopodium quinoa HOM05D005229 ORTHO05D006378 2.1e-91 339.3 215 79.5
Lj1g0022024 Lotus japonicus HOM05D005229 ORTHO05D006378 2.1e-91 339.3 216 81.9
Hund07343 Selenicereus undatus HOM05D005229 ORTHO05D006378 2.1e-91 339.3 215 79.1
BcaC07g37428 Brassica carinata HOM05D005229 ORTHO05D006378 2.7e-91 339.0 214 78.0
Eucgr.K02362 Eucalyptus grandis HOM05D005229 ORTHO05D006378 2.7e-91 339.0 223 77.6
FAN14G1738 Fragaria x ananassa HOM05D005229 ORTHO05D006378 2.7e-91 339.0 215 81.4
CSS0044510 Camellia sinensis var. sinensis HOM05D005229 ORTHO05D006378 3.6e-91 338.6 214 80.8
CANSAT54G2118 Cannabis sativa HOM05D005229 ORTHO05D006378 3.6e-91 338.6 215 79.1
CDE06G2797 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 4.7e-91 338.2 205 80.5
CsaV3_2G009680 Cucumis sativus L. HOM05D005229 ORTHO05D006378 4.7e-91 338.2 211 80.1
Carub.0007s3001 Capsella rubella HOM05D005229 ORTHO05D006378 6.1e-91 337.8 216 79.6
Lalb_Chr01g0020361 Lupinus albus HOM05D005229 ORTHO05D006378 6.1e-91 337.8 215 81.4
Phvul.008G054400 Phaseolus vulgaris HOM05D005229 ORTHO05D006378 6.1e-91 337.8 215 80.0
Sed0023204 Sechium edule HOM05D005229 ORTHO05D006378 6.1e-91 337.8 211 79.6
arahy.Tifrunner.gnm1.ann1.MF538D Arachis hypogaea HOM05D005229 ORTHO05D006378 7.9e-91 337.4 215 79.5
Duzib138G0242 Durio zibethinus HOM05D005229 ORTHO05D006378 7.9e-91 337.4 215 79.1
arahy.Tifrunner.gnm1.ann1.18YQBF Arachis hypogaea HOM05D005229 ORTHO05D006378 1.0e-90 337.0 215 79.5
PSO017G0175 Papaver somniferum HOM05D005229 ORTHO05D006378 1.0e-90 337.0 216 79.6
PSO675G2116 Papaver somniferum HOM05D005229 ORTHO05D006378 1.0e-90 337.0 216 79.6
Ca_07979_v3 Cicer arietinum L. HOM05D005229 ORTHO05D006378 1.4e-90 336.7 215 79.1
EL10Ac4g09972 Beta vulgaris HOM05D005229 ORTHO05D006378 2.3e-90 335.9 215 80.5
Sed0003052 Sechium edule HOM05D005229 ORTHO05D006378 2.3e-90 335.9 211 79.6
Medtr7g079900 Medicago truncatula HOM05D005229 ORTHO05D006378 6.7e-90 334.3 215 77.7
Psat3g138440 Pisum sativum HOM05D005229 ORTHO05D006378 2.0e-89 332.8 215 77.7
TPR.G30351 Trifolium pratense HOM05D005229 ORTHO05D006378 2.0e-89 332.8 216 80.6
PGR044G1943 Punica granatum HOM05D005229 ORTHO05D006378 6.3e-88 327.8 208 81.2
Lj1P104T52 Lonicera japonica HOM05D005229 ORTHO05D006378 8.2e-88 327.4 165 96.4
ATR1147G045 Amborella trichopoda HOM05D005229 ORTHO05D006378 5.0e-85 318.2 204 79.4
Os12g0420400 Oryza sativa ssp. japonica HOM05D005229 ORTHO05D006378 2.5e-84 315.8 215 73.5
Ah.04g158950 Amaranthus hybridus HOM05D005229 ORTHO05D006378 3.2e-84 315.5 215 75.3
SEGI_02964 Sequoiadendron giganteum HOM05D005229 ORTHO05D006378 1.4e-82 310.1 181 81.8
Zm00001eb123000 Zea mays HOM05D005229 ORTHO05D006378 6.3e-80 301.2 170 84.7
Zm00001eb336580 Zea mays HOM05D005229 ORTHO05D006378 2.5e-76 289.3 163 83.4
CDE06G0966 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 2.7e-75 285.8 180 77.8
Mapoly0102s0025 Marchantia polymorpha HOM05D005229 ORTHO05D006378 3.6e-75 285.4 209 69.9
Pp3c5_4200 Physcomitrium patens HOM05D005229 ORTHO05D006378 3.0e-74 282.3 195 73.8
Pp3c27_2310 Physcomitrium patens HOM05D005229 ORTHO05D006378 3.4e-73 278.9 195 72.3
Pp3c16_5670 Physcomitrium patens HOM05D005229 ORTHO05D006378 5.7e-73 278.1 172 77.3
Nitab4.5_0001348g0130 Nicotiana tabacum HOM05D005229 ORTHO05D006378 2.2e-72 276.2 165 82.4
AagrBONN_evm.TU.Sc2ySwM_362.2854 Anthoceros agrestis HOM05D005229 ORTHO05D006378 7.0e-71 271.2 171 76.6
Dinv28794 Davidia involucrata HOM05D005229 ORTHO05D006378 1.3e-64 250.4 215 65.1
CBR_g27900 Chara braunii HOM05D005229 ORTHO05D006378 6.8e-58 228.0 190 61.6
Nitab4.5_0001348g0080 Nicotiana tabacum HOM05D005229 ORTHO05D006378 1.4e-55 220.3 217 59.9
Peaxi162Scf01242g00025 Petunia axillaris HOM05D005229 ORTHO05D006378 1.7e-53 213.4 216 57.9
Cre12.g486300 Chlamydomonas reinhardtii HOM05D005229 ORTHO05D006378 2.9e-48 196.1 171 58.5
Hma1.2p1_0171F.1_g075540 Hydrangea macrophylla HOM05D005229 ORTHO05D006378 4.9e-48 195.3 127 77.2
MCO13G042 Micromonas commoda HOM05D005229 ORTHO05D006378 8.3e-48 194.5 192 55.2
Actinidia23801 Actinidia chinensis HOM05D005229 ORTHO05D006378 8.6e-45 184.5 137 76.6
PRCOL_00002830 Prasinoderma coloniale HOM05D005229 ORTHO05D006378 1.4e-42 177.2 150 56.7
MD04G1204600 Malus domestica HOM05D000208 ORTHO05D000130 9.9e-25 117.9 103 68.9
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 8.4e-16 88.2 59 74.6
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 8.4e-16 88.2 59 74.6
Actinidia23346 Actinidia chinensis HOM05D005229 ORTHO05D057974 8.4e-08 61.6 58 55.2


User provided reference genes

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