Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P1101T48 Lonicera japonica HOM05D001129 ORTHO05D013941 1.2e-39 166.4 107 100.0
Rhsim13G0059900 Rhododendron simsii HOM05D001129 ORTHO05D003814 4.9e-17 91.3 43 93.0
Dinv28728 Davidia involucrata HOM05D001129 ORTHO05D003814 8.4e-17 90.5 59 72.9
Actinidia25195 Actinidia chinensis HOM05D001129 ORTHO05D013941 3.2e-16 88.6 43 88.4
CSS0010940 Camellia sinensis var. sinensis HOM05D001129 ORTHO05D003814 9.3e-16 87.0 43 90.7
MSTRG.18541 Avicennia marina HOM05D001129 ORTHO05D003814 2.7e-15 85.5 59 66.1
Hma1.2p1_0170F.1_g075000 Hydrangea macrophylla HOM05D001129 ORTHO05D003814 2.7e-15 85.5 43 88.4
SalBow1G3107 Salvia bowleyana HOM05D001129 ORTHO05D003814 3.5e-15 85.1 56 67.9
DCAR_004800 Daucus carota HOM05D001129 ORTHO05D003814 6.0e-15 84.3 59 64.4
SGA_v2.0_scaffold20G09290 Striga asiatica HOM05D001129 ORTHO05D003814 2.3e-14 82.4 53 62.3
Migut.D00820 Erythranthe guttata HOM05D001129 ORTHO05D003814 3.0e-14 82.0 51 70.6
unitig_747.g21447 Utricularia gibba HOM05D001129 ORTHO05D013941 3.0e-14 82.0 53 67.9
Cc01_g15280 Coffea canephora HOM05D001129 ORTHO05D003814 1.5e-13 79.7 43 79.1
Solyc02g043860.3 Solanum lycopersicum HOM05D001129 ORTHO05D003814 1.5e-13 79.7 59 67.8
Sopen02g007490 Solanum pennellii HOM05D001129 ORTHO05D003814 1.5e-13 79.7 59 67.8
GSVIVG01024571001 Vitis vinifera HOM05D001129 ORTHO05D003814 1.5e-13 79.7 43 81.4
ECA247G0490 Erigeron canadensis HOM05D001129 ORTHO05D003814 3.3e-13 78.6 43 79.1
HanXRQChr08g0230671 Helianthus annuus HOM05D001129 ORTHO05D003814 9.6e-13 77.0 43 76.7
TWI79G0222 Tripterygium wilfordii HOM05D001129 ORTHO05D003814 1.3e-12 76.6 53 66.0
AUR62036212 Chenopodium quinoa HOM05D001129 ORTHO05D003814 2.1e-12 75.9 43 76.7
RcHm_v2.0_Chr5g0073071 Rosa chinensis HOM05D001129 ORTHO05D003814 2.1e-12 75.9 102 40.2
CANSAT54G2955 Cannabis sativa HOM05D001129 ORTHO05D003814 6.2e-12 74.3 109 49.5
Hund05051 Selenicereus undatus HOM05D001129 ORTHO05D003814 1.4e-11 73.2 43 72.1
EL10Ac7g15852 Beta vulgaris HOM05D001129 ORTHO05D003814 1.8e-11 72.8 37 86.5
Prupe.6G041800 Prunus persica HOM05D001129 ORTHO05D003814 1.8e-11 72.8 49 71.4
ClCG02G019050 Citrullus lanatus HOM05D001129 ORTHO05D003814 3.1e-11 72.0 54 61.1
Manes.02G208660 Manihot esculenta HOM05D001129 ORTHO05D003814 4.0e-11 71.6 42 73.8
Nitab4.5_0002620g0020 Nicotiana tabacum HOM05D001129 ORTHO05D003814 4.0e-11 71.6 57 61.4
RcHm_v2.0_Chr5g0073051 Rosa chinensis HOM05D001129 ORTHO05D003814 4.0e-11 71.6 42 69.0
RcHm_v2.0_Chr5g0073061 Rosa chinensis HOM05D001129 ORTHO05D003814 4.0e-11 71.6 42 69.0
Ciclev10000133m.g Citrus clementina HOM05D001129 ORTHO05D003814 5.3e-11 71.2 50 62.0
MD11G1054400 Malus domestica HOM05D001129 ORTHO05D003814 5.3e-11 71.2 48 64.6
Nitab4.5_0000002g0190 Nicotiana tabacum HOM05D001129 ORTHO05D003814 5.3e-11 71.2 59 62.7
RcHm_v2.0_Chr5g0072931 Rosa chinensis HOM05D001129 ORTHO05D003814 6.9e-11 70.9 102 39.2
ECA247G0660 Erigeron canadensis HOM05D001129 ORTHO05D003814 9.0e-11 70.5 48 66.7
CAN.G3.32 Capsicum annuum HOM05D000185 ORTHO05D000105 1.2e-10 70.1 58 63.8
QL01p024916 Quercus lobata HOM05D001129 ORTHO05D003814 1.2e-10 70.1 43 72.1
CiPaw.13G064200 Carya illinoinensis HOM05D001129 ORTHO05D003814 1.5e-10 69.7 40 77.5
Sabra13G0124500 Salix brachista HOM05D001129 ORTHO05D003814 1.5e-10 69.7 42 69.0
MELO3C026877.2 Cucumis melo HOM05D001129 ORTHO05D003814 2.0e-10 69.3 43 69.8
Potri.013G154600 Populus trichocarpa HOM05D001129 ORTHO05D003814 2.6e-10 68.9 42 69.0
PGR102G0317 Punica granatum HOM05D001129 ORTHO05D003814 2.6e-10 68.9 42 69.0
Sed0019452 Sechium edule HOM05D001129 ORTHO05D003814 2.6e-10 68.9 37 78.4
ATR1127G095 Amborella trichopoda HOM05D001129 ORTHO05D003814 3.4e-10 68.6 48 64.6
CsaV3_6G019170 Cucumis sativus L. HOM05D001129 ORTHO05D003814 3.4e-10 68.6 103 60.2
Lj4g0007497 Lotus japonicus HOM05D001129 ORTHO05D003814 3.4e-10 68.6 37 78.4
RcHm_v2.0_Chr5g0072811 Rosa chinensis HOM05D001129 ORTHO05D013941 3.4e-10 68.6 48 62.5
FAN11G2940 Fragaria x ananassa HOM05D001129 ORTHO05D003814 4.5e-10 68.2 47 63.8
MD03G1052300 Malus domestica HOM05D001129 ORTHO05D003814 4.5e-10 68.2 38 76.3
Lalb_Chr18g0054261 Lupinus albus HOM05D001129 ORTHO05D003814 5.8e-10 67.8 37 81.1
THA.LOC104800786 Tarenaya hassleriana HOM05D001129 ORTHO05D003814 5.8e-10 67.8 46 60.9
Nn2g10322 Nelumbo nucifera HOM05D001129 ORTHO05D003814 1.0e-09 67.0 34 88.2
FvH4_5g00310 Fragaria vesca HOM05D001129 ORTHO05D003814 1.3e-09 66.6 41 65.9
FAN08G0077 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.3e-09 66.6 41 65.9
FAN16G0023 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.3e-09 66.6 47 61.7
FAN18G3567 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.3e-09 66.6 41 65.9
RcHm_v2.0_Chr5g0072781 Rosa chinensis HOM05D001129 ORTHO05D003814 1.3e-09 66.6 37 75.7
Sc06g0008100 Simmondsia chinensis HOM05D001129 ORTHO05D003814 1.3e-09 66.6 43 67.4
COL.COLO4_11207 Corchorus olitorius HOM05D001129 ORTHO05D003814 1.7e-09 66.2 43 67.4
Thecc.09G363300 Theobroma cacao HOM05D001129 ORTHO05D003814 1.7e-09 66.2 43 65.1
TAR369G1057 Trochodendron aralioides HOM05D001129 ORTHO05D003814 1.7e-09 66.2 44 68.2
RcHm_v2.0_Chr7g0202261 Rosa chinensis HOM05D001129 ORTHO05D003814 2.2e-09 65.9 41 65.9
FvH4_3g40411 Fragaria vesca HOM05D001129 ORTHO05D013941 3.8e-09 65.1 42 61.9
Aqoxy2G00701 Aquilegia oxysepala HOM05D001129 ORTHO05D003814 4.9e-09 64.7 46 60.9
FAN13G0243 Fragaria x ananassa HOM05D001129 ORTHO05D003814 4.9e-09 64.7 50 56.0
Prupe.6G041900 Prunus persica HOM05D001129 ORTHO05D003814 4.9e-09 64.7 97 38.1
AUR62009732 Chenopodium quinoa HOM05D001129 ORTHO05D003814 6.5e-09 64.3 37 75.7
Cfa011826 Carpinus fangiana HOM05D001129 ORTHO05D003814 8.4e-09 63.9 37 75.7
TAR623G0919 Trochodendron aralioides HOM05D001129 ORTHO05D003814 8.4e-09 63.9 35 80.0
FvH4_3g40361 Fragaria vesca HOM05D001129 ORTHO05D003814 1.1e-08 63.5 103 37.9
FAN11G2052 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.1e-08 63.5 103 37.9
FAN16G3400 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.1e-08 63.5 103 37.9
RcHm_v2.0_Chr5g0073041 Rosa chinensis HOM05D001129 ORTHO05D003814 1.1e-08 63.5 102 35.3
Aa31LG1G7970 Aethionema arabicum HOM05D001129 ORTHO05D003814 1.4e-08 63.2 33 72.7
Lj6g0006618 Lotus japonicus HOM05D001129 ORTHO05D003814 1.4e-08 63.2 37 73.0
Atru.chr1.2504 Acer truncatum HOM05D001129 ORTHO05D003814 1.9e-08 62.8 45 62.2
AL1G16920 Arabidopsis lyrata HOM05D001129 ORTHO05D003814 1.9e-08 62.8 40 62.5
AT1G06900 Arabidopsis thaliana HOM05D001129 ORTHO05D003814 1.9e-08 62.8 40 62.5
FAN04G0733 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.9e-08 62.8 47 55.3
Eucgr.B04025 Eucalyptus grandis HOM05D001129 ORTHO05D003814 3.2e-08 62.0 36 75.0
FAN21G2900 Fragaria x ananassa HOM05D001129 ORTHO05D003814 3.2e-08 62.0 103 37.9
BcaC07g42040 Brassica carinata HOM05D001129 ORTHO05D003814 4.2e-08 61.6 44 54.5
C08p50940 Brassica napus HOM05D001129 ORTHO05D003814 4.2e-08 61.6 44 54.5
BolC8t52622H Brassica oleracea HOM05D001129 ORTHO05D003814 4.2e-08 61.6 44 54.5
Carub.0001s0619 Capsella rubella HOM05D001129 ORTHO05D003814 4.2e-08 61.6 38 63.2
Thhalv10006660m.g Eutrema salsugineum HOM05D001129 ORTHO05D003814 4.2e-08 61.6 38 63.2
Sp1g05610 Schrenkiella parvula HOM05D001129 ORTHO05D003814 4.2e-08 61.6 38 63.2
Aqoxy5G03056 Aquilegia oxysepala HOM05D001129 ORTHO05D003814 5.5e-08 61.2 41 65.9
arahy.Tifrunner.gnm1.ann1.1AE9PZ Arachis hypogaea HOM05D001129 ORTHO05D003814 7.1e-08 60.8 37 70.3
arahy.Tifrunner.gnm1.ann1.HA8THR Arachis hypogaea HOM05D001129 ORTHO05D003814 7.1e-08 60.8 37 70.3
A10p05450 Brassica napus HOM05D001129 ORTHO05D003814 7.1e-08 60.8 43 58.1
BraA10t42809Z Brassica rapa HOM05D001129 ORTHO05D003814 7.1e-08 60.8 43 58.1
Ca_15041_v3 Cicer arietinum L. HOM05D001129 ORTHO05D003814 7.1e-08 60.8 43 65.1
Duzib168G0079 Durio zibethinus HOM05D001129 ORTHO05D003814 7.1e-08 60.8 39 66.7
Gohir.A03G023300 Gossypium hirsutum HOM05D001129 ORTHO05D003814 7.1e-08 60.8 45 64.4
Gohir.D03G145400 Gossypium hirsutum HOM05D001129 ORTHO05D003814 7.1e-08 60.8 45 64.4
Gorai.003G152500 Gossypium raimondii HOM05D001129 ORTHO05D003814 7.1e-08 60.8 45 64.4
CARHR006570 Cardamine hirsuta HOM05D001129 ORTHO05D003814 9.3e-08 60.5 44 56.8
Glyma.18G053700 Glycine max HOM05D001129 ORTHO05D003814 9.3e-08 60.5 37 70.3
Os03g0336300 Oryza sativa ssp. japonica HOM05D001129 ORTHO05D003814 1.6e-07 59.7 43 58.1
BcaB02g06767 Brassica carinata HOM05D001129 ORTHO05D003814 2.7e-07 58.9 44 54.5
Glyma.11G160300 Glycine max HOM05D001129 ORTHO05D003814 2.7e-07 58.9 38 65.8
TPR.G27384 Trifolium pratense HOM05D001129 ORTHO05D003814 2.7e-07 58.9 35 71.4
BcaC07g42543 Brassica carinata HOM05D001129 ORTHO05D003814 3.5e-07 58.5 44 50.0
BcaC07g42547 Brassica carinata HOM05D001129 ORTHO05D003814 3.5e-07 58.5 44 50.0
Medtr3g466820 Medicago truncatula HOM05D001129 ORTHO05D003814 3.5e-07 58.5 35 68.6
PSO339G0703 Papaver somniferum HOM05D001129 ORTHO05D003814 6.0e-07 57.8 33 75.8
PSO384G2839 Papaver somniferum HOM05D001129 ORTHO05D003814 6.0e-07 57.8 33 75.8
BcaB03g13434 Brassica carinata HOM05D001129 ORTHO05D013941 7.9e-07 57.4 33 66.7
C08p02730 Brassica napus HOM05D001129 ORTHO05D003814 7.9e-07 57.4 33 66.7
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 7.9e-07 57.4 33 66.7
BraA08t35492Z Brassica rapa HOM05D001129 ORTHO05D003814 7.9e-07 57.4 33 66.7
Phvul.006G077500 Phaseolus vulgaris HOM05D001129 ORTHO05D003814 7.9e-07 57.4 33 75.8
BcaC05g24658 Brassica carinata HOM05D001129 ORTHO05D003814 1.8e-06 56.2 44 50.0
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 1.8e-06 56.2 44 50.0
BolC5t29275H Brassica oleracea HOM05D001129 ORTHO05D003814 1.8e-06 56.2 44 50.0
A08p35850 Brassica napus HOM05D001129 ORTHO05D003814 2.3e-06 55.8 33 66.7
VMungo0540G0021 Vigna mungo HOM05D001129 ORTHO05D003814 3.9e-06 55.1 33 72.7
CBR_g27959 Chara braunii HOM05D001129 ORTHO05D003814 8.7e-06 53.9 37 62.2


User provided reference genes

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