Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C893T10 Lonicera japonica HOM05D001598 ORTHO05D007192 1.3e-39 166.0 85 100.0
Lj2A895T22 Lonicera japonica HOM05D001598 ORTHO05D007192 1.4e-38 162.5 82 100.0
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 3.0e-33 144.8 79 88.6
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 3.0e-33 144.8 81 85.2
CSS0046041 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 6.7e-33 143.7 79 87.3
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 6.7e-33 143.7 79 87.3
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 8.7e-33 143.3 79 88.6
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 1.1e-32 142.9 79 87.3
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 1.5e-32 142.5 79 86.1
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 1.9e-32 142.1 79 87.3
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 1.9e-32 142.1 79 87.3
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 1.9e-32 142.1 79 87.3
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 2.5e-32 141.7 79 88.6
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 2.5e-32 141.7 79 86.1
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 3.3e-32 141.4 79 83.5
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 3.3e-32 141.4 79 87.3
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 4.3e-32 141.0 79 83.5
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 5.6e-32 140.6 79 84.8
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 5.6e-32 140.6 79 86.1
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 5.6e-32 140.6 79 84.8
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 7.4e-32 140.2 79 84.8
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 7.4e-32 140.2 79 83.5
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 7.4e-32 140.2 79 83.5
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 7.4e-32 140.2 79 83.5
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 7.4e-32 140.2 79 84.8
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 7.4e-32 140.2 79 84.8
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 7.4e-32 140.2 79 84.8
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 1.3e-31 139.4 79 84.8
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 1.3e-31 139.4 79 84.8
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 1.6e-31 139.0 79 84.8
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 2.1e-31 138.7 79 83.5
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 2.1e-31 138.7 79 83.5
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 2.1e-31 138.7 79 84.8
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 2.1e-31 138.7 79 81.0
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 2.8e-31 138.3 79 84.8
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 2.8e-31 138.3 79 84.8
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 2.8e-31 138.3 79 84.8
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 2.8e-31 138.3 79 86.1
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 2.8e-31 138.3 79 84.8
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 3.7e-31 137.9 79 81.0
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 3.7e-31 137.9 79 83.5
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 3.7e-31 137.9 79 86.1
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 3.7e-31 137.9 79 79.7
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 3.7e-31 137.9 79 79.7
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 3.7e-31 137.9 79 82.3
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 4.8e-31 137.5 79 81.0
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 4.8e-31 137.5 79 82.3
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 4.8e-31 137.5 79 82.3
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 4.8e-31 137.5 79 82.3
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 6.2e-31 137.1 79 83.5
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 6.2e-31 137.1 79 83.5
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 8.1e-31 136.7 79 81.0
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 8.1e-31 136.7 79 82.3
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 1.1e-30 136.3 79 79.7
Atru.ctg664.11 Acer truncatum HOM05D001598 ORTHO05D007192 1.1e-30 136.3 79 79.7
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 1.1e-30 136.3 92 76.1
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 1.1e-30 136.3 79 82.3
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 1.4e-30 136.0 79 83.5
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 1.4e-30 136.0 79 78.5
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 1.8e-30 135.6 79 79.7
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 1.8e-30 135.6 79 82.3
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 1.8e-30 135.6 79 82.3
Peaxi162Scf00050g02227 Petunia axillaris HOM05D001598 ORTHO05D007192 2.4e-30 135.2 79 81.0
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 3.1e-30 134.8 79 81.0
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 3.1e-30 134.8 79 78.5
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 4.0e-30 134.4 78 82.1
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 4.0e-30 134.4 79 81.0
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 4.0e-30 134.4 79 79.7
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 5.3e-30 134.0 79 82.3
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 6.9e-30 133.7 79 84.8
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 9.0e-30 133.3 79 84.8
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 1.2e-29 132.9 79 81.0
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 1.5e-29 132.5 79 78.5
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 2.0e-29 132.1 79 82.3
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 2.0e-29 132.1 79 81.0
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 2.0e-29 132.1 79 77.2
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 2.6e-29 131.7 79 79.7
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 3.4e-29 131.3 79 78.5
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 5.8e-29 130.6 79 81.0
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 7.6e-29 130.2 79 77.2
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 1.3e-28 129.4 79 78.5
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 1.3e-28 129.4 79 79.7
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 1.7e-28 129.0 79 78.5
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 1.7e-28 129.0 78 82.1
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 2.9e-28 128.3 79 79.7
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 4.9e-28 127.5 79 77.2
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 4.9e-28 127.5 79 75.9
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 4.9e-28 127.5 79 77.2
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 1.9e-27 125.6 79 77.2
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 7.1e-27 123.6 79 72.2
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 7.1e-27 123.6 78 76.9
HPP92_013448 Vanilla planifolia HOM05D001598 ORTHO05D007192 9.3e-27 123.2 78 76.9
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 4.6e-26 120.9 78 70.5
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 5.1e-25 117.5 110 58.2
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 8.7e-25 116.7 110 57.3
SEGI_02371 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 8.7e-25 116.7 79 70.9
Zm00001eb067470 Zea mays HOM05D001598 ORTHO05D007192 1.9e-24 115.5 76 75.0
Mapoly1495s0001 Marchantia polymorpha HOM05D001598 ORTHO05D007192 1.4e-22 109.4 79 63.3
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 2.4e-22 108.6 78 64.1
Glyma.14G045450 Glycine max HOM05D001598 ORTHO05D007192 2.0e-21 105.5 65 76.9
SGA_v2.0_scaffold6G03251 Striga asiatica HOM05D001598 ORTHO05D007192 6.5e-20 100.5 84 64.3
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 7.1e-19 97.1 79 57.0
SEGI_37017 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 7.1e-19 97.1 69 65.2
CBR_g53773 Chara braunii HOM05D000019 ORTHO05D000002 2.1e-18 95.5 79 54.4
HPP92_013469 Vanilla planifolia HOM05D001598 ORTHO05D007192 6.0e-18 94.0 78 64.1
PRCOL_00002568 Prasinoderma coloniale HOM05D001598 ORTHO05D007192 3.3e-08 61.6 84 41.7


User provided reference genes

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