Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C731T11 Lonicera japonica HOM05D004789 ORTHO05D006078 7.9e-191 670.2 327 100.0
Dinv29093 Davidia involucrata HOM05D004789 ORTHO05D006078 2.2e-169 599.0 326 88.3
Eucgr.C00113 Eucalyptus grandis HOM05D004789 ORTHO05D006078 4.6e-167 591.3 326 85.3
CSS0025571 Camellia sinensis var. sinensis HOM05D004789 ORTHO05D006078 5.1e-166 587.8 326 86.2
CSS0046891 Camellia sinensis var. sinensis HOM05D004789 ORTHO05D006078 5.1e-166 587.8 326 86.2
Hma1.2p1_0609F.1_g188420 Hydrangea macrophylla HOM05D004789 ORTHO05D006078 6.7e-166 587.4 326 85.3
vmacro19979 Vaccinium macrocarpon HOM05D004789 ORTHO05D006078 1.5e-165 586.3 326 86.8
Actinidia06832 Actinidia chinensis HOM05D004789 ORTHO05D006078 2.0e-165 585.9 326 85.6
RcHm_v2.0_Chr3g0447811 Rosa chinensis HOM05D004789 ORTHO05D006078 3.3e-165 585.1 326 85.6
COL.COLO4_38035 Corchorus olitorius HOM05D004789 ORTHO05D006078 9.7e-165 583.6 326 83.7
Cc09_g03720 Coffea canephora HOM05D004789 ORTHO05D006078 1.3e-164 583.2 326 83.7
MD13G1061000 Malus domestica HOM05D004789 ORTHO05D006078 2.2e-164 582.4 326 83.7
MD04G1245400 Malus domestica HOM05D004789 ORTHO05D006078 2.8e-164 582.0 326 84.4
FAN09G1869 Fragaria x ananassa HOM05D004789 ORTHO05D006078 4.8e-164 581.3 326 84.4
Thecc.05G194100 Theobroma cacao HOM05D004789 ORTHO05D006078 4.8e-164 581.3 326 84.0
QL01p049601 Quercus lobata HOM05D004789 ORTHO05D006078 3.1e-163 578.6 326 85.0
Glyma.18G242600 Glycine max HOM05D004789 ORTHO05D006078 4.1e-163 578.2 326 83.7
FvH4_6g00440 Fragaria vesca HOM05D004789 ORTHO05D006078 5.3e-163 577.8 324 84.6
Nitab4.5_0001435g0010 Nicotiana tabacum HOM05D004789 ORTHO05D006078 5.3e-163 577.8 326 84.0
Prupe.6G362000 Prunus persica HOM05D004789 ORTHO05D006078 9.1e-163 577.0 326 83.7
Nitab4.5_0000083g0070 Nicotiana tabacum HOM05D004789 ORTHO05D006078 1.5e-162 576.2 326 83.7
Solyc04g056540.3 Solanum lycopersicum HOM05D004789 ORTHO05D006078 2.0e-162 575.9 326 83.4
CAN.G1807.2 Capsicum annuum HOM05D004789 ORTHO05D006078 2.6e-162 575.5 326 83.4
HanXRQChr06g0173981 Helianthus annuus HOM05D004789 ORTHO05D006078 4.5e-162 574.7 326 83.7
Rhsim05G0170800 Rhododendron simsii HOM05D004789 ORTHO05D006078 4.5e-162 574.7 324 85.2
Duzib106G1853 Durio zibethinus HOM05D004789 ORTHO05D006078 7.7e-162 573.9 326 83.1
Gorai.004G263000 Gossypium raimondii HOM05D004789 ORTHO05D006078 7.7e-162 573.9 326 82.5
GSVIVG01019077001 Vitis vinifera HOM05D004789 ORTHO05D006078 7.7e-162 573.9 326 84.7
Gohir.D08G246500 Gossypium hirsutum HOM05D004789 ORTHO05D006078 1.3e-161 573.2 326 82.5
Sopen04g025480 Solanum pennellii HOM05D004789 ORTHO05D006078 1.7e-161 572.8 326 83.1
Lsat_1_v5_gn_3_24661 Lactuca sativa HOM05D004789 ORTHO05D006078 2.2e-161 572.4 326 84.0
Manes.12G005100 Manihot esculenta HOM05D004789 ORTHO05D006078 2.9e-161 572.0 326 82.2
Oeu009739.1 Olea europaea HOM05D004789 ORTHO05D006078 5.0e-161 571.2 326 84.4
Gohir.A08G226100 Gossypium hirsutum HOM05D004789 ORTHO05D006078 1.1e-160 570.1 326 81.9
Lalb_Chr03g0038671 Lupinus albus HOM05D004789 ORTHO05D006078 1.4e-160 569.7 326 81.3
PGR083G2717 Punica granatum HOM05D004789 ORTHO05D006078 1.9e-160 569.3 326 83.1
PGR092G0005 Punica granatum HOM05D004789 ORTHO05D006078 1.9e-160 569.3 326 83.1
Phvul.008G053900 Phaseolus vulgaris HOM05D004789 ORTHO05D006078 2.5e-160 568.9 326 82.5
CiPaw.07G081200 Carya illinoinensis HOM05D004789 ORTHO05D006078 4.2e-160 568.2 326 82.2
arahy.Tifrunner.gnm1.ann1.537LAH Arachis hypogaea HOM05D004789 ORTHO05D006078 1.2e-159 566.6 326 81.6
arahy.Tifrunner.gnm1.ann1.66TKXZ Arachis hypogaea HOM05D004789 ORTHO05D006078 1.2e-159 566.6 326 81.6
CANSAT54G2477 Cannabis sativa HOM05D004789 ORTHO05D006078 1.6e-159 566.2 324 83.6
Migut.F02116 Erythranthe guttata HOM05D004789 ORTHO05D006078 7.9e-159 563.9 326 82.2
Potri.019G054000 Populus trichocarpa HOM05D004789 ORTHO05D006078 7.9e-159 563.9 326 81.3
Sc16g0010430 Simmondsia chinensis HOM05D004789 ORTHO05D006078 2.3e-158 562.4 324 81.2
PSO675G5907 Papaver somniferum HOM05D004789 ORTHO05D006078 3.9e-158 561.6 326 81.6
TAR626G0377 Trochodendron aralioides HOM05D004789 ORTHO05D006078 5.1e-158 561.2 326 81.6
HanXRQChr17g0538711 Helianthus annuus HOM05D004789 ORTHO05D006078 1.1e-157 560.1 326 83.4
AUR62000303 Chenopodium quinoa HOM05D004789 ORTHO05D006078 2.0e-157 559.3 326 80.4
Ciclev10011346m.g Citrus clementina HOM05D004789 ORTHO05D006078 2.0e-157 559.3 326 80.1
Glyma.09G249800 Glycine max HOM05D004789 ORTHO05D006078 3.3e-157 558.5 326 81.0
PGR119G2005 Punica granatum HOM05D004789 ORTHO05D006078 7.4e-157 557.4 326 80.4
Hund21904 Selenicereus undatus HOM05D004789 ORTHO05D006078 7.4e-157 557.4 326 80.7
Ca_07992_v3 Cicer arietinum L. HOM05D004789 ORTHO05D006078 2.2e-156 555.8 324 80.9
TPR.G10693 Trifolium pratense HOM05D004789 ORTHO05D006078 2.2e-156 555.8 324 80.6
EL10Ac4g09992 Beta vulgaris HOM05D004789 ORTHO05D006078 4.8e-156 554.7 326 79.1
THA.LOC104801872 Tarenaya hassleriana HOM05D004789 ORTHO05D006078 4.8e-156 554.7 326 80.4
SGA_v2.0_scaffold14G07118 Striga asiatica HOM05D004789 ORTHO05D006078 8.2e-156 553.9 326 81.9
VMungo1383G0580 Vigna mungo HOM05D004789 ORTHO05D006078 1.8e-155 552.7 326 80.1
SGA_v2.0_scaffold11G05812 Striga asiatica HOM05D004789 ORTHO05D006078 2.4e-155 552.4 326 81.0
TWI36G0056 Tripterygium wilfordii HOM05D004789 ORTHO05D006078 3.1e-155 552.0 353 74.8
HanXRQChr06g0174041 Helianthus annuus HOM05D004789 ORTHO05D006078 4.1e-155 551.6 326 81.0
Medtr7g080117 Medicago truncatula HOM05D004789 ORTHO05D006078 2.6e-154 548.9 324 80.2
DCAR_020684 Daucus carota HOM05D004789 ORTHO05D006078 3.5e-154 548.5 326 78.8
AUR62006648 Chenopodium quinoa HOM05D004789 ORTHO05D006078 4.5e-154 548.1 338 77.2
Lj1g0000623 Lotus japonicus HOM05D004789 ORTHO05D006078 7.7e-154 547.4 326 79.4
Atru.BG.270.p Acer truncatum HOM05D004789 ORTHO05D006078 1.0e-153 547.0 325 81.5
Aqoxy2G01476 Aquilegia oxysepala HOM05D004789 ORTHO05D006078 1.7e-153 546.2 326 79.4
CDE05G3244 Ceratophyllum demersum HOM05D004789 ORTHO05D006078 1.7e-153 546.2 326 78.2
Sp5g14500 Schrenkiella parvula HOM05D004789 ORTHO05D006078 1.9e-152 542.7 328 79.0
Sabra19G0063100 Salix brachista HOM05D004789 ORTHO05D006078 2.5e-152 542.3 326 78.8
Hund07352 Selenicereus undatus HOM05D004789 ORTHO05D006078 1.2e-151 540.0 326 78.2
Thhalv10010225m.g Eutrema salsugineum HOM05D004789 ORTHO05D006078 1.6e-151 539.7 328 78.7
MBI11_g05799_MAGBIO Magnolia biondii HOM05D004789 ORTHO05D006078 2.7e-151 538.9 321 78.8
BraA06t25110Z Brassica rapa HOM05D004789 ORTHO05D006078 8.0e-151 537.3 326 79.1
ATR0661G474 Amborella trichopoda HOM05D004789 ORTHO05D006078 1.4e-150 536.6 326 76.7
BcaB01g00932 Brassica carinata HOM05D004789 ORTHO05D006078 1.8e-150 536.2 328 78.4
BcaC01g01832 Brassica carinata HOM05D004789 ORTHO05D006078 2.3e-150 535.8 326 79.1
Aa31csc271G10 Aethionema arabicum HOM05D004789 ORTHO05D006078 3.0e-150 535.4 325 78.5
A06p20290 Brassica napus HOM05D004789 ORTHO05D006078 3.9e-150 535.0 326 79.1
Carub.0005s1348 Capsella rubella HOM05D004789 ORTHO05D006078 5.2e-150 534.6 326 78.2
AL5G26580 Arabidopsis lyrata HOM05D004789 ORTHO05D006078 1.1e-149 533.5 328 78.0
Peaxi162Scf00048g00311 Petunia axillaris HOM05D004789 ORTHO05D006078 1.1e-149 533.5 347 75.8
unitig_0.g1013 Utricularia gibba HOM05D004789 ORTHO05D006078 1.1e-149 533.5 326 77.3
C03p71470 Brassica napus HOM05D004789 ORTHO05D006078 2.6e-149 532.3 327 78.9
BolC3t19438H Brassica oleracea HOM05D004789 ORTHO05D006078 5.7e-149 531.2 327 78.9
AT3G47390 Arabidopsis thaliana HOM05D004789 ORTHO05D006078 1.3e-148 530.0 328 77.4
CARHR156030 Cardamine hirsuta HOM05D004789 ORTHO05D006078 3.7e-148 528.5 327 77.7
Haze_04568 Corylus avellana HOM05D004789 ORTHO05D006078 8.2e-148 527.3 427 63.7
ClCG03G010600 Citrullus lanatus HOM05D004789 ORTHO05D006078 3.1e-147 525.4 325 76.3
Aa31sc60G10 Aethionema arabicum HOM05D004789 ORTHO05D006078 1.6e-146 523.1 325 77.8
CsaV3_1G044470 Cucumis sativus L. HOM05D004789 ORTHO05D006078 4.5e-146 521.5 325 76.3
Os02g0473000 Oryza sativa ssp. japonica HOM05D004789 ORTHO05D006078 4.2e-144 515.0 325 75.7
Ah.06g195430 Amaranthus hybridus HOM05D004789 ORTHO05D006078 1.0e-142 510.4 362 68.8
Zm00001eb240960 Zea mays HOM05D004789 ORTHO05D006078 1.0e-142 510.4 325 75.1
MELO3C010050.2 Cucumis melo HOM05D004789 ORTHO05D006078 6.7e-142 507.7 354 70.3
Sed0000944 Sechium edule HOM05D004789 ORTHO05D006078 3.8e-137 491.9 325 73.2
MELO3C010048.2 Cucumis melo HOM05D004789 ORTHO05D006078 8.5e-137 490.7 324 72.2
HPP92_008120 Vanilla planifolia HOM05D004789 ORTHO05D006078 5.5e-136 488.0 324 69.8
PSO017G6674 Papaver somniferum HOM05D004789 ORTHO05D006078 2.0e-130 469.5 326 70.9
ATR0804G049 Amborella trichopoda HOM05D004789 ORTHO05D006078 1.5e-125 453.4 338 67.5
Sed0025011 Sechium edule HOM05D004789 ORTHO05D006078 6.3e-124 448.0 325 67.4
FAN14G5139 Fragaria x ananassa HOM05D004789 ORTHO05D006078 4.4e-117 425.2 239 84.1
SalBow1G3031 Salvia bowleyana HOM05D004789 ORTHO05D006078 7.0e-115 417.9 252 79.0
Pp3c21_670 Physcomitrium patens HOM05D004789 ORTHO05D006078 5.0e-113 411.8 327 61.8
SMO141G0244 Selaginella moellendorffii HOM05D004789 ORTHO05D006078 4.3e-112 408.7 324 59.9
Mapoly0151s0033 Marchantia polymorpha HOM05D004789 ORTHO05D006078 3.6e-111 405.6 325 63.1
Aa31sc348G30 Aethionema arabicum HOM05D004789 ORTHO05D006078 3.1e-110 402.5 271 72.7
Pp3c19_9150 Physcomitrium patens HOM05D004789 ORTHO05D006078 3.5e-106 389.0 327 59.9
CBR_g21226 Chara braunii HOM05D004789 ORTHO05D006078 6.6e-105 384.8 333 58.0
Pp3c9_9570 Physcomitrium patens HOM05D004789 ORTHO05D006078 2.6e-101 372.9 324 57.4
Psat3g102920 Pisum sativum HOM05D004789 ORTHO05D006078 2.6e-101 372.9 209 83.3
SMO145G0191 Selaginella moellendorffii HOM05D004789 ORTHO05D006078 8.3e-100 367.9 328 56.4
Ah.01g017460 Amaranthus hybridus HOM05D004789 ORTHO05D006078 3.2e-99 365.9 326 57.7
AagrBONN_evm.TU.Sc2ySwM_117.447 Anthoceros agrestis HOM05D004789 ORTHO05D006078 1.4e-94 350.5 286 60.8
Pp3c15_7710 Physcomitrium patens HOM05D004789 ORTHO05D006078 4.4e-93 345.5 325 54.5
Hma1.2p1_0609F.1_g188430 Hydrangea macrophylla HOM05D004789 ORTHO05D006078 1.1e-91 340.9 182 89.6
Nn1g09776 Nelumbo nucifera HOM05D004789 ORTHO05D006078 6.0e-90 335.1 204 75.0
PRCOL_00003473 Prasinoderma coloniale HOM05D004789 ORTHO05D006078 2.3e-81 306.6 364 48.6
Cpa.g.sc39.15 Carica papaya HOM05D004789 ORTHO05D006078 2.1e-74 283.5 164 81.7
Cre17.g728950 Chlamydomonas reinhardtii HOM05D004789 ORTHO05D006078 1.8e-73 280.4 502 35.7
MCO11G683 Micromonas commoda HOM05D004789 ORTHO05D006078 6.9e-70 268.5 323 47.4
Lsat_1_v5_gn_8_109000 Lactuca sativa HOM05D004789 ORTHO05D006078 2.7e-66 256.5 162 78.4
PGSC0003DMG400010518 Solanum tuberosum HOM05D004789 ORTHO05D006078 1.7e-60 237.3 128 88.3
SHI13715 Sapria himalayana HOM05D004789 ORTHO05D006078 7.9e-58 228.4 143 74.8
SEGI_15354 Sequoiadendron giganteum HOM05D004789 ORTHO05D006078 1.5e-53 214.2 167 64.7
Nn1g09737 Nelumbo nucifera HOM05D004789 ORTHO05D006078 2.0e-53 213.8 125 82.4
SEGI_29409 Sequoiadendron giganteum HOM05D004789 ORTHO05D006078 2.5e-48 196.8 143 69.2
ECA236G3464 Erigeron canadensis HOM05D004789 ORTHO05D006078 5.1e-41 172.6 116 73.3
Lsat_1_v5_gn_7_32541 Lactuca sativa HOM05D004789 ORTHO05D006078 1.5e-40 171.0 127 70.1
Hund24180 Selenicereus undatus HOM05D004789 ORTHO05D006078 9.7e-40 168.3 252 41.3
Hund01197 Selenicereus undatus HOM05D004789 ORTHO05D006078 1.5e-37 161.0 247 41.7
Cpa.g.sc2508.1 Carica papaya HOM05D004789 ORTHO05D006078 4.2e-35 152.9 87 81.6
Cpa.g.sc39.16 Carica papaya HOM05D004789 ORTHO05D006078 1.8e-33 147.5 75 86.7
Hund01346 Selenicereus undatus HOM05D004789 ORTHO05D006078 7.4e-32 142.1 91 72.5
SalBow1G4379 Salvia bowleyana HOM05D004789 ORTHO05D006078 4.8e-31 139.4 75 82.7
Hund01450 Selenicereus undatus HOM05D004789 ORTHO05D006078 4.1e-30 136.3 122 55.7
SEGI_33759 Sequoiadendron giganteum HOM05D004789 ORTHO05D006078 1.9e-27 127.5 87 71.3
Hma1.2p1_0199F.1_g085710 Hydrangea macrophylla HOM05D004789 ORTHO05D006078 6.3e-23 112.5 62 79.0
SEGI_24407 Sequoiadendron giganteum HOM05D004789 ORTHO05D006078 5.7e-16 89.4 90 48.9
Sopen01g035780 Solanum pennellii HOM05D004789 ORTHO05D051096 2.0e-13 80.9 56 75.0
Solyc01g089930.2 Solanum lycopersicum HOM05D004789 ORTHO05D051096 2.7e-13 80.5 56 75.0
Hund12586 Selenicereus undatus HOM05D004789 ORTHO05D006078 1.0e-12 78.6 84 51.2
Solyc01g094230.4 Solanum lycopersicum HOM05D004789 ORTHO05D390785 4.7e-10 69.7 43 74.4
Sopen01g029920 Solanum pennellii HOM05D004789 ORTHO05D393610 6.1e-10 69.3 39 84.6
CDE05G2962 Ceratophyllum demersum HOM05D004789 ORTHO05D006078 2.0e-08 64.3 46 65.2
AUR62044487 Chenopodium quinoa HOM05D004337 ORTHO05D021976 2.2e-07 60.8 44 68.2
AUR62038356 Chenopodium quinoa HOM05D001477 ORTHO05D021976 6.4e-07 59.3 44 65.9


User provided reference genes

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