Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C671G7 Lonicera japonica HOM05D004119 ORTHO05D004797 0.0e+00 1120.1 554 100.0
Dinv36315 Davidia involucrata HOM05D004119 ORTHO05D004797 6.1e-260 900.6 578 78.5
COL.COLO4_10388 Corchorus olitorius HOM05D004119 ORTHO05D004797 4.2e-253 877.9 586 75.6
GSVIVG01025352001 Vitis vinifera HOM05D004119 ORTHO05D004797 7.2e-253 877.1 576 75.2
CsaV3_1G042400 Cucumis sativus L. HOM05D004119 ORTHO05D004797 4.7e-252 874.4 588 74.8
Hma1.2p1_1169F.1_g263240 Hydrangea macrophylla HOM05D004119 ORTHO05D004797 4.7e-252 874.4 578 76.0
Duzib168G2002 Durio zibethinus HOM05D004119 ORTHO05D004797 6.1e-252 874.0 589 75.0
Atru.chr3.2434 Acer truncatum HOM05D004119 ORTHO05D004797 7.9e-252 873.6 580 75.2
Gohir.D08G023300 Gossypium hirsutum HOM05D004119 ORTHO05D004797 7.9e-252 873.6 585 74.7
DCAR_002029 Daucus carota HOM05D004119 ORTHO05D004797 1.0e-251 873.2 572 75.9
Atru.chr3.2433 Acer truncatum HOM05D004119 ORTHO05D004797 1.4e-251 872.8 580 75.0
Peaxi162Scf00403g00212 Petunia axillaris HOM05D004119 ORTHO05D004797 1.8e-251 872.5 575 74.3
Thecc.09G219300 Theobroma cacao HOM05D004119 ORTHO05D004797 3.0e-251 871.7 589 74.7
CiPaw.14G126500 Carya illinoinensis HOM05D004119 ORTHO05D004797 3.9e-251 871.3 571 76.7
Gohir.A08G012900 Gossypium hirsutum HOM05D004119 ORTHO05D004797 5.1e-251 870.9 586 74.2
Gorai.004G018600 Gossypium raimondii HOM05D004119 ORTHO05D004797 8.8e-251 870.2 585 74.4
QL01p009105 Quercus lobata HOM05D004119 ORTHO05D004797 2.6e-250 868.6 591 73.6
ClCG03G013650 Citrullus lanatus HOM05D004119 ORTHO05D004797 3.3e-250 868.2 588 75.0
MELO3C015675.2 Cucumis melo HOM05D004119 ORTHO05D004797 4.4e-250 867.8 588 74.8
TWI60G0817 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 9.7e-250 866.7 574 75.6
Potri.001G013900 Populus trichocarpa HOM05D004119 ORTHO05D004797 1.7e-249 865.9 568 74.6
CANSAT54G1702 Cannabis sativa HOM05D004119 ORTHO05D004797 2.8e-249 865.1 585 73.8
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 3.7e-249 864.8 557 76.1
Nitab4.5_0004389g0050 Nicotiana tabacum HOM05D004119 ORTHO05D004797 4.8e-249 864.4 573 74.3
PGR119G0026 Punica granatum HOM05D004119 ORTHO05D004797 6.3e-249 864.0 574 73.9
RcHm_v2.0_Chr5g0079321 Rosa chinensis HOM05D004119 ORTHO05D004797 1.1e-248 863.2 574 74.7
MD03G1018700 Malus domestica HOM05D004119 ORTHO05D004797 1.4e-248 862.8 584 74.3
Eucgr.B02600 Eucalyptus grandis HOM05D004119 ORTHO05D004797 4.1e-248 861.3 576 74.0
FAN11G1732 Fragaria x ananassa HOM05D004119 ORTHO05D004797 9.1e-248 860.1 567 75.1
Peaxi162Scf00062g01417 Petunia axillaris HOM05D004119 ORTHO05D004797 9.1e-248 860.1 576 74.7
Prupe.6G017800 Prunus persica HOM05D004119 ORTHO05D004797 9.1e-248 860.1 583 74.3
Ciclev10014571m.g Citrus clementina HOM05D004119 ORTHO05D004797 1.2e-247 859.8 580 74.8
Cc01_g03810 Coffea canephora HOM05D004119 ORTHO05D004797 1.2e-247 859.8 584 73.8
FAN25G0197 Fragaria x ananassa HOM05D004119 ORTHO05D004797 1.2e-247 859.8 567 75.1
FvH4_3g43840 Fragaria vesca HOM05D004119 ORTHO05D004797 2.6e-247 858.6 567 75.0
Aqoxy2G00086 Aquilegia oxysepala HOM05D004119 ORTHO05D004797 3.4e-247 858.2 570 75.6
Manes.14G015300 Manihot esculenta HOM05D004119 ORTHO05D004797 7.7e-247 857.1 587 73.3
Sabra01G0010200 Salix brachista HOM05D004119 ORTHO05D004797 1.0e-246 856.7 568 74.1
CAN.G649.14 Capsicum annuum HOM05D004119 ORTHO05D004797 1.3e-246 856.3 580 73.4
TWI32G0563 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 1.3e-246 856.3 574 75.6
CiPaw.13G168300 Carya illinoinensis HOM05D004119 ORTHO05D004797 2.2e-246 855.5 571 75.1
PSO384G1641 Papaver somniferum HOM05D004119 ORTHO05D004797 2.2e-246 855.5 578 72.1
CSS0046641 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 2.9e-246 855.1 545 77.8
Nn2g15648 Nelumbo nucifera HOM05D004119 ORTHO05D004797 2.9e-246 855.1 566 74.2
Nitab4.5_0001568g0150 Nicotiana tabacum HOM05D004119 ORTHO05D004797 5.0e-246 854.4 579 72.9
PSO339G4050 Papaver somniferum HOM05D004119 ORTHO05D004797 5.0e-246 854.4 578 72.0
Lalb_Chr02g0144391 Lupinus albus HOM05D004119 ORTHO05D004797 1.1e-245 853.2 569 74.9
Haze_23030 Corylus avellana HOM05D004119 ORTHO05D004797 1.9e-245 852.4 618 70.6
ECA233G2530 Erigeron canadensis HOM05D004119 ORTHO05D004797 1.9e-245 852.4 563 74.8
HanXRQChr02g0056721 Helianthus annuus HOM05D004119 ORTHO05D004797 1.2e-244 849.7 574 73.2
Lj1C433G5 Lonicera japonica HOM05D004119 ORTHO05D004797 1.2e-244 849.7 548 78.8
Oeu043306.1 Olea europaea HOM05D004119 ORTHO05D004797 1.2e-244 849.7 585 73.2
Sopen01g002470 Solanum pennellii HOM05D004119 ORTHO05D004797 1.2e-244 849.7 575 73.0
AUR62019225 Chenopodium quinoa HOM05D004119 ORTHO05D004797 2.7e-244 848.6 572 72.2
MD11G1020700 Malus domestica HOM05D004119 ORTHO05D004797 4.7e-244 847.8 582 73.5
Phvul.007G003400 Phaseolus vulgaris HOM05D004119 ORTHO05D004797 4.7e-244 847.8 567 74.8
VMungo0720G1960 Vigna mungo HOM05D004119 ORTHO05D004797 1.4e-243 846.3 567 74.3
Solyc12g100200.2 Solanum lycopersicum HOM05D004119 ORTHO05D004797 1.8e-243 845.9 570 74.0
Gohir.D05G069700 Gossypium hirsutum HOM05D004119 ORTHO05D004797 3.0e-243 845.1 589 72.5
PGSC0003DMG400032205 Solanum tuberosum HOM05D004119 ORTHO05D004797 3.9e-243 844.7 575 73.2
Gohir.A05G066800 Gossypium hirsutum HOM05D004119 ORTHO05D004797 5.2e-243 844.3 589 72.8
Lalb_Chr21g0307631 Lupinus albus HOM05D004119 ORTHO05D004797 5.2e-243 844.3 571 73.6
Cpa.g.sc117.3 Carica papaya HOM05D004119 ORTHO05D004797 6.7e-243 844.0 589 71.8
AUR62000053 Chenopodium quinoa HOM05D004119 ORTHO05D004797 6.7e-243 844.0 572 72.0
Sed0006721 Sechium edule HOM05D004119 ORTHO05D004797 8.8e-243 843.6 585 72.6
Sed0015121 Sechium edule HOM05D004119 ORTHO05D004797 1.1e-242 843.2 589 72.8
Solyc01g006490.4 Solanum lycopersicum HOM05D004119 ORTHO05D004797 1.1e-242 843.2 578 72.1
Gorai.009G070700 Gossypium raimondii HOM05D004119 ORTHO05D004797 7.4e-242 840.5 589 72.3
MSTRG.12487 Avicennia marina HOM05D004119 ORTHO05D004797 1.3e-241 839.7 590 71.5
HanXRQChr13g0404241 Helianthus annuus HOM05D004119 ORTHO05D004797 1.3e-241 839.7 577 72.1
Sopen12g034830 Solanum pennellii HOM05D004119 ORTHO05D004797 1.7e-241 839.3 570 73.7
MSTRG.18400 Avicennia marina HOM05D004119 ORTHO05D004797 6.3e-241 837.4 587 71.9
Carub.0006s1120 Capsella rubella HOM05D004119 ORTHO05D004797 8.2e-241 837.0 579 71.2
AT5G13030 Arabidopsis thaliana HOM05D004119 ORTHO05D004797 1.1e-240 836.6 578 71.5
SGA_v2.0_scaffold3G01554 Striga asiatica HOM05D004119 ORTHO05D004797 1.1e-240 836.6 600 70.8
AL6G23620 Arabidopsis lyrata HOM05D004119 ORTHO05D004797 1.4e-240 836.3 579 71.2
THA.LOC104811125 Tarenaya hassleriana HOM05D004119 ORTHO05D004797 1.8e-240 835.9 589 71.3
Oeu055814.1 Olea europaea HOM05D004119 ORTHO05D004797 2.4e-240 835.5 574 72.6
Thhalv10012956m.g Eutrema salsugineum HOM05D004119 ORTHO05D004797 3.1e-240 835.1 576 71.9
CARHR200430 Cardamine hirsuta HOM05D004119 ORTHO05D004797 4.1e-240 834.7 579 71.3
Sp6g30940 Schrenkiella parvula HOM05D004119 ORTHO05D004797 9.1e-240 833.6 571 72.0
Medtr1g116875 Medicago truncatula HOM05D004119 ORTHO05D004797 1.2e-239 833.2 579 72.2
Nitab4.5_0001146g0130 Nicotiana tabacum HOM05D004119 ORTHO05D004797 1.2e-239 833.2 579 72.2
Lj5g0022671 Lotus japonicus HOM05D004119 ORTHO05D004797 1.6e-239 832.8 568 72.5
SalBow2G0171 Salvia bowleyana HOM05D004119 ORTHO05D004797 2.2e-238 828.9 619 68.2
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 3.8e-238 828.2 560 73.2
Migut.N02286 Erythranthe guttata HOM05D004119 ORTHO05D004797 5.0e-238 827.8 560 72.9
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 5.0e-238 827.8 568 73.2
Psat6g242880 Pisum sativum HOM05D004119 ORTHO05D004797 5.0e-238 827.8 566 72.6
Aa31LG3G14630 Aethionema arabicum HOM05D004119 ORTHO05D004797 6.5e-238 827.4 578 70.8
ATR0605G198 Amborella trichopoda HOM05D004119 ORTHO05D004797 1.9e-237 825.9 546 73.8
BraA10t44578Z Brassica rapa HOM05D004119 ORTHO05D004797 4.2e-237 824.7 581 70.7
A10p25160 Brassica napus HOM05D004119 ORTHO05D004797 7.2e-237 823.9 581 70.7
C09p64070 Brassica napus HOM05D004119 ORTHO05D004797 1.2e-236 823.2 581 70.4
BolC9t59244H Brassica oleracea HOM05D004119 ORTHO05D004797 2.1e-236 822.4 573 71.0
Glyma.20G246800 Glycine max HOM05D004119 ORTHO05D004797 2.1e-236 822.4 550 73.8
Os06g0320700 Oryza sativa ssp. japonica HOM05D004119 ORTHO05D004797 8.0e-236 820.5 546 72.7
CAN.G575.41 Capsicum annuum HOM05D004119 ORTHO05D004797 4.4e-234 814.7 576 70.7
HanXRQChr11g0345481 Helianthus annuus HOM05D004119 ORTHO05D004797 2.8e-233 812.0 575 70.1
vmacro12703 Vaccinium macrocarpon HOM05D004119 ORTHO05D004797 2.8e-233 812.0 528 76.1
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 3.7e-233 811.6 665 64.1
BolC3t13178H Brassica oleracea HOM05D004119 ORTHO05D004797 6.3e-233 810.8 579 70.5
TPR.G8893 Trifolium pratense HOM05D004119 ORTHO05D004797 6.3e-233 810.8 531 75.3
A03p05770 Brassica napus HOM05D004119 ORTHO05D004797 1.1e-232 810.1 572 71.0
BraA03t09916Z Brassica rapa HOM05D004119 ORTHO05D004797 5.3e-232 807.7 572 70.6
ECA248G2677 Erigeron canadensis HOM05D004119 ORTHO05D004797 7.0e-232 807.4 572 70.6
C03p06720 Brassica napus HOM05D004119 ORTHO05D004797 5.0e-230 801.2 583 69.6
HPP92_018953 Vanilla planifolia HOM05D004119 ORTHO05D004797 5.2e-227 791.2 578 69.4
Lsat_1_v5_gn_1_68000 Lactuca sativa HOM05D004119 ORTHO05D004797 5.4e-224 781.2 562 69.8
CDE04G3728 Ceratophyllum demersum HOM05D004119 ORTHO05D004797 2.1e-220 769.2 532 70.7
BcaB01g05381 Brassica carinata HOM05D004119 ORTHO05D004797 5.2e-219 764.6 582 66.8
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 1.3e-217 760.0 546 70.9
SEGI_31462 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 3.1e-216 755.4 556 68.5
Pp3c9_22190 Physcomitrium patens HOM05D004119 ORTHO05D004797 2.5e-205 719.2 552 63.2
Mapoly0063s0012 Marchantia polymorpha HOM05D004119 ORTHO05D004797 2.8e-204 715.7 593 61.0
Hund21812 Selenicereus undatus HOM05D004119 ORTHO05D004797 3.4e-202 708.8 482 73.0
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 3.7e-201 705.3 553 66.0
MBI04_g46409_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 1.9e-200 703.0 559 64.9
Lj1A436T13 Lonicera japonica HOM05D004119 ORTHO05D004797 4.6e-199 698.4 447 78.7
AagrBONN_evm.TU.Sc2ySwM_344.3798 Anthoceros agrestis HOM05D004119 ORTHO05D004797 1.7e-198 696.4 546 63.4
Sc16g0011910 Simmondsia chinensis HOM05D004119 ORTHO05D004797 3.5e-191 672.2 447 74.3
SMO134G0253 Selaginella moellendorffii HOM05D004119 ORTHO05D004797 1.9e-189 666.4 515 65.4
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 2.4e-187 659.4 438 74.4
TAR623G1465 Trochodendron aralioides HOM05D004119 ORTHO05D004797 3.0e-166 589.3 482 64.3
CBR_g38091 Chara braunii HOM05D004119 ORTHO05D004797 4.3e-165 585.5 538 55.8
SEGI_38661 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 6.9e-163 578.2 449 65.3
Nn7g36025 Nelumbo nucifera HOM05D004119 ORTHO05D004797 9.7e-141 504.6 546 53.3
EL10Ac4g10322 Beta vulgaris HOM05D004119 ORTHO05D004797 6.9e-139 498.4 329 75.4
Zm00001eb381770 Zea mays HOM05D004119 ORTHO05D004797 9.1e-139 498.0 361 67.9
Cre16.g648900 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 4.8e-132 475.7 560 47.3
Dinv08059 Davidia involucrata HOM05D004119 ORTHO05D004797 2.6e-130 469.9 531 53.1
PGR119G0420 Punica granatum HOM05D004119 ORTHO05D004797 4.7e-127 459.1 344 66.9
arahy.Tifrunner.gnm1.ann1.J6MIXF Arachis hypogaea HOM05D004119 ORTHO05D004797 2.2e-124 450.3 296 76.7
Oeu024459.1 Olea europaea HOM05D004119 ORTHO05D004797 1.4e-123 447.6 397 61.5
PRCOL_00001378 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.4e-110 404.4 572 41.8
arahy.Tifrunner.gnm1.ann1.ZPWD91 Arachis hypogaea HOM05D004119 ORTHO05D004797 5.2e-110 402.5 280 70.7
CSS0049397 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 3.7e-108 396.4 278 71.6
Cre02.g108250 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 1.7e-84 317.8 645 33.6
RcHm_v2.0_Chr5g0079021 Rosa chinensis HOM05D004119 ORTHO05D004797 4.6e-82 309.7 184 81.0
FvH4_3g45150 Fragaria vesca HOM05D004119 ORTHO05D004797 1.0e-81 308.5 263 62.7
Psat3g017080 Pisum sativum HOM05D004119 ORTHO05D004797 8.6e-81 305.4 281 56.2
Cfa025573 Carpinus fangiana HOM05D004119 ORTHO05D004797 4.1e-75 286.6 594 34.8
Pp3s34_210 Physcomitrium patens HOM05D000198 ORTHO05D004797 4.3e-72 276.6 495 36.2
PRCOL_00005150 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.4e-67 261.5 582 32.5
MCO09G196 Micromonas commoda HOM05D004119 ORTHO05D004797 7.1e-59 232.6 610 31.6
RcHm_v2.0_Chr5g0079011 Rosa chinensis HOM05D004119 ORTHO05D004797 7.9e-58 229.2 142 76.8
Actinidia39374 Actinidia chinensis HOM05D004119 ORTHO05D004797 1.9e-56 224.6 301 45.8
TAR369G0199 Trochodendron aralioides HOM05D004119 ORTHO05D004797 3.3e-56 223.8 140 78.6
TAR369G0071 Trochodendron aralioides HOM05D004119 ORTHO05D004797 6.2e-55 219.5 142 73.9
Glyma.10G296266 Glycine max HOM05D004119 ORTHO05D004797 2.0e-53 214.5 188 57.4
Lj1P432T25 Lonicera japonica HOM05D004119 ORTHO05D004797 1.1e-51 208.8 167 64.1
PRCOL_00005494 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 5.1e-49 199.9 600 29.3
MD11G1020000 Malus domestica HOM05D004119 ORTHO05D004797 6.7e-49 199.5 120 82.5
Psat3g137640 Pisum sativum HOM05D004119 ORTHO05D004797 1.1e-48 198.7 125 73.6
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 1.1e-43 182.2 100 86.0
TAR362G0095 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.8e-41 174.9 117 73.5
Manes.06G169401 Manihot esculenta HOM05D004119 ORTHO05D004797 4.8e-39 166.8 107 75.7
VMungo0720G3038 Vigna mungo HOM05D004119 ORTHO05D004797 1.4e-38 165.2 147 57.8
TAR362G1239 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.8e-38 164.9 111 72.1
Lj1A436G11 Lonicera japonica HOM05D004119 ORTHO05D004797 4.3e-32 143.7 92 79.3
TAR369G0705 Trochodendron aralioides HOM05D004119 ORTHO05D004797 3.1e-30 137.5 102 69.6
TPR.G14880 Trifolium pratense HOM05D004119 ORTHO05D004797 1.2e-29 135.6 77 79.2
MBI04_g37845_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 1.0e-28 132.5 65 92.3
Hund21661 Selenicereus undatus HOM05D002401 ORTHO05D007109 3.8e-28 130.6 67 89.6
Lsat_1_v5_gn_4_11801 Lactuca sativa HOM05D004119 ORTHO05D004797 2.3e-25 121.3 115 53.9
RcHm_v2.0_Chr5g0079031 Rosa chinensis HOM05D004119 ORTHO05D004797 1.7e-20 105.1 63 76.2
TPR.G25082 Trifolium pratense HOM05D004119 ORTHO05D004797 1.1e-11 75.9 123 41.5
TAR633G0263 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.1e-11 75.9 54 70.4
Actinidia39373 Actinidia chinensis HOM05D004119 ORTHO05D004797 1.9e-11 75.1 59 69.5
RcHm_v2.0_Chr5g0079041 Rosa chinensis HOM05D004119 ORTHO05D004797 1.4e-09 68.9 61 60.7
HanXRQChr13g0426091 Helianthus annuus HOM05D004119 ORTHO05D004797 2.8e-07 61.2 38 68.4
BraA01t00507Z Brassica rapa HOM05D004119 ORTHO05D004797 8.2e-07 59.7 66 54.5


User provided reference genes

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