Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C655T2 Lonicera japonica HOM05D005156 ORTHO05D006710 4.1e-162 574.7 299 100.0
Actinidia16358 Actinidia chinensis HOM05D005156 ORTHO05D006710 1.1e-122 443.7 320 76.2
Hma1.2p1_1115F.1_g258845 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 3.5e-121 438.7 317 75.7
GSVIVG01037376001 Vitis vinifera HOM05D005156 ORTHO05D006710 3.9e-120 435.3 312 76.3
Haze_23195 Corylus avellana HOM05D005156 ORTHO05D006710 5.1e-120 434.9 326 73.3
MD11G1196200 Malus domestica HOM05D005156 ORTHO05D006710 1.5e-119 433.3 319 74.3
Cfa009832 Carpinus fangiana HOM05D005156 ORTHO05D006710 2.5e-119 432.6 321 74.1
CSS0001612 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 9.6e-119 430.6 306 77.1
CSS0030488 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 1.3e-118 430.3 306 76.8
TAR626G1548 Trochodendron aralioides HOM05D005156 ORTHO05D006710 2.4e-117 426.0 321 72.6
Potri.001G254000 Populus trichocarpa HOM05D005156 ORTHO05D006710 3.1e-117 425.6 313 74.8
CiPaw.13G153000 Carya illinoinensis HOM05D005156 ORTHO05D006710 5.3e-117 424.9 313 74.1
Ciclev10015838m.g Citrus clementina HOM05D005156 ORTHO05D006710 5.3e-117 424.9 313 73.5
FvH4_3g28170 Fragaria vesca HOM05D005156 ORTHO05D006710 5.3e-117 424.9 308 75.3
RcHm_v2.0_Chr5g0050911 Rosa chinensis HOM05D005156 ORTHO05D006710 5.3e-117 424.9 312 74.0
FAN16G2156 Fragaria x ananassa HOM05D005156 ORTHO05D006710 1.2e-116 423.7 302 75.5
Atru.chr3.2617 Acer truncatum HOM05D005156 ORTHO05D006710 2.0e-116 422.9 309 74.8
Prupe.4G258300 Prunus persica HOM05D005156 ORTHO05D006710 3.4e-116 422.2 312 74.4
Rhsim13G0216600 Rhododendron simsii HOM05D005156 ORTHO05D006710 5.8e-116 421.4 341 69.8
Sc16g0011170 Simmondsia chinensis HOM05D005156 ORTHO05D006710 5.8e-116 421.4 315 72.7
QL01p017825 Quercus lobata HOM05D005156 ORTHO05D006710 7.6e-116 421.0 308 75.3
CANSAT54G2883 Cannabis sativa HOM05D005156 ORTHO05D006710 1.9e-114 416.4 306 73.9
Oeu001490.1 Olea europaea HOM05D005156 ORTHO05D006710 1.9e-114 416.4 303 73.9
Aqoxy8s002 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 9.3e-114 414.1 312 71.5
Sabra16G0154700 Salix brachista HOM05D005156 ORTHO05D006710 9.3e-114 414.1 315 74.0
Lalb_Chr10g0094741 Lupinus albus HOM05D005156 ORTHO05D006710 1.6e-113 413.3 302 73.5
Thecc.09G243300 Theobroma cacao HOM05D005156 ORTHO05D006710 2.7e-113 412.5 300 74.0
Aqoxy4G00402 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 3.5e-113 412.1 288 75.3
Migut.D00644 Erythranthe guttata HOM05D005156 ORTHO05D006710 1.3e-112 410.2 303 73.3
MSTRG.18451 Avicennia marina HOM05D005156 ORTHO05D006710 3.9e-112 408.7 305 71.1
arahy.Tifrunner.gnm1.ann1.KCM926 Arachis hypogaea HOM05D005156 ORTHO05D006710 6.7e-112 407.9 301 73.8
Cpa.g.sc84.13 Carica papaya HOM05D005156 ORTHO05D006710 1.5e-111 406.8 304 72.7
arahy.Tifrunner.gnm1.ann1.9TL5ZW Arachis hypogaea HOM05D005156 ORTHO05D006710 2.5e-111 406.0 301 73.4
Gohir.D07G126000 Gossypium hirsutum HOM05D005156 ORTHO05D006710 5.6e-111 404.8 300 72.7
Gorai.001G136000 Gossypium raimondii HOM05D005156 ORTHO05D006710 9.6e-111 404.1 300 72.7
Eucgr.J00726 Eucalyptus grandis HOM05D005156 ORTHO05D006710 1.3e-110 403.7 308 70.8
Gohir.A07G121700 Gossypium hirsutum HOM05D005156 ORTHO05D006710 3.7e-110 402.1 300 72.7
Glyma.09G002700 Glycine max HOM05D005156 ORTHO05D006710 4.8e-110 401.7 310 71.3
PSO210G1653 Papaver somniferum HOM05D005156 ORTHO05D006710 4.8e-110 401.7 303 71.0
Lj3g0017854 Lotus japonicus HOM05D005156 ORTHO05D006710 6.2e-110 401.4 302 71.9
CsaV3_1G043140 Cucumis sativus L. HOM05D005156 ORTHO05D006710 1.8e-109 399.8 310 71.0
vmacro04002 Vaccinium macrocarpon HOM05D005156 ORTHO05D006710 2.4e-109 399.4 391 60.9
PGSC0003DMG400019760 Solanum tuberosum HOM05D005156 ORTHO05D006710 3.1e-109 399.1 310 70.0
Ah.06g194400 Amaranthus hybridus HOM05D005156 ORTHO05D006710 4.0e-109 398.7 301 70.8
AL1G58170 Arabidopsis lyrata HOM05D005156 ORTHO05D006710 6.9e-109 397.9 300 71.7
PSO210G0499 Papaver somniferum HOM05D005156 ORTHO05D006710 9.0e-109 397.5 303 70.3
Lsat_1_v5_gn_2_29420 Lactuca sativa HOM05D005156 ORTHO05D006710 1.2e-108 397.1 293 70.6
PGR119G1881 Punica granatum HOM05D005156 ORTHO05D006710 1.2e-108 397.1 312 69.2
Cc01_g05890 Coffea canephora HOM05D005156 ORTHO05D006710 2.6e-108 396.0 290 73.4
ECA238G2265 Erigeron canadensis HOM05D005156 ORTHO05D006710 4.5e-108 395.2 313 66.1
BcaB02g11155 Brassica carinata HOM05D005156 ORTHO05D006710 1.3e-107 393.7 300 70.3
Sopen11g015730 Solanum pennellii HOM05D005156 ORTHO05D006710 1.7e-107 393.3 312 69.2
Solyc11g033260.2 Solanum lycopersicum HOM05D005156 ORTHO05D006710 2.2e-107 392.9 312 69.2
Carub.0001s3958 Capsella rubella HOM05D005156 ORTHO05D006710 2.9e-107 392.5 300 70.7
AT1G50510 Arabidopsis thaliana HOM05D005156 ORTHO05D006710 4.9e-107 391.7 300 70.3
VMungo1383G1089 Vigna mungo HOM05D005156 ORTHO05D006710 4.9e-107 391.7 309 68.3
BcaC05g27410 Brassica carinata HOM05D005156 ORTHO05D006710 1.1e-106 390.6 300 70.3
CARHR040540 Cardamine hirsuta HOM05D005156 ORTHO05D006710 1.4e-106 390.2 300 70.3
BcaB07g33488 Brassica carinata HOM05D005156 ORTHO05D006710 2.4e-106 389.4 300 70.3
BcaC08g43222 Brassica carinata HOM05D005156 ORTHO05D006710 3.2e-106 389.0 300 69.7
BraA06t23519Z Brassica rapa HOM05D005156 ORTHO05D006710 5.5e-106 388.3 302 69.2
A05p20090 Brassica napus HOM05D005156 ORTHO05D006710 7.1e-106 387.9 302 69.9
BraA05t20917Z Brassica rapa HOM05D005156 ORTHO05D006710 7.1e-106 387.9 302 69.9
Phvul.011G080400 Phaseolus vulgaris HOM05D005156 ORTHO05D006710 7.1e-106 387.9 304 68.1
TPR.G34160 Trifolium pratense HOM05D005156 ORTHO05D006710 7.1e-106 387.9 312 67.9
Thhalv10011639m.g Eutrema salsugineum HOM05D005156 ORTHO05D006710 9.3e-106 387.5 300 69.0
Manes.15G112800 Manihot esculenta HOM05D005156 ORTHO05D006710 2.1e-105 386.3 275 76.4
ATR0751G133 Amborella trichopoda HOM05D005156 ORTHO05D006710 3.5e-105 385.6 309 68.6
Sp1g37360 Schrenkiella parvula HOM05D005156 ORTHO05D006710 3.5e-105 385.6 295 70.2
Nitab4.5_0006419g0030 Nicotiana tabacum HOM05D005156 ORTHO05D006710 6.0e-105 384.8 311 68.5
EL10Ac4g10175 Beta vulgaris HOM05D005156 ORTHO05D006710 7.9e-105 384.4 307 68.1
C05p33580 Brassica napus HOM05D005156 ORTHO05D006710 7.9e-105 384.4 302 69.2
AUR62000172 Chenopodium quinoa HOM05D005156 ORTHO05D006710 1.0e-104 384.0 306 67.3
THA.LOC104804468 Tarenaya hassleriana HOM05D005156 ORTHO05D006710 3.0e-104 382.5 299 69.2
CAN.G1323.2 Capsicum annuum HOM05D005156 ORTHO05D006710 3.9e-104 382.1 311 68.2
FAN21G2369 Fragaria x ananassa HOM05D005156 ORTHO05D006710 5.1e-104 381.7 302 69.9
Peaxi162Scf00473g00218 Petunia axillaris HOM05D005156 ORTHO05D006710 5.1e-104 381.7 338 64.5
FAN11G0102 Fragaria x ananassa HOM05D005156 ORTHO05D006710 2.5e-103 379.4 302 69.9
Ca_12758_v3 Cicer arietinum L. HOM05D005156 ORTHO05D006710 3.3e-103 379.0 330 64.5
HPP92_001936 Vanilla planifolia HOM05D005156 ORTHO05D006710 3.3e-103 379.0 307 66.4
FAN25G0057 Fragaria x ananassa HOM05D005156 ORTHO05D006710 4.3e-103 378.6 308 68.2
BolC5t32085H Brassica oleracea HOM05D005156 ORTHO05D006710 7.4e-103 377.9 336 63.1
unitig_90.g27461 Utricularia gibba HOM05D005156 ORTHO05D006710 7.4e-103 377.9 302 68.5
Psat7g227760 Pisum sativum HOM05D005156 ORTHO05D006710 1.6e-102 376.7 312 66.0
MELO3C015153.2 Cucumis melo HOM05D005156 ORTHO05D006710 6.2e-102 374.8 298 69.1
Hund21990 Selenicereus undatus HOM05D005156 ORTHO05D006710 9.0e-101 370.9 301 67.1
ClCG03G012920 Citrullus lanatus HOM05D005156 ORTHO05D006710 2.0e-100 369.8 334 63.2
A06p03060 Brassica napus HOM05D005156 ORTHO05D006710 5.8e-100 368.2 268 72.4
Aa31LG10G3780 Aethionema arabicum HOM05D005156 ORTHO05D006710 4.9e-99 365.2 261 73.2
AUR62039839 Chenopodium quinoa HOM05D005156 ORTHO05D006710 6.5e-99 364.8 336 61.0
HanXRQChr06g0183211 Helianthus annuus HOM05D005156 ORTHO05D006710 6.5e-99 364.8 275 68.4
Sed0002302 Sechium edule HOM05D005156 ORTHO05D006710 1.1e-98 364.0 307 67.8
C06p05700 Brassica napus HOM05D005156 ORTHO05D006710 1.6e-97 360.1 266 72.2
Lj2C684T3 Lonicera japonica HOM05D005156 ORTHO05D006710 2.3e-96 356.3 242 82.6
Os08g0504400 Oryza sativa ssp. japonica HOM05D005156 ORTHO05D006710 8.7e-96 354.4 266 71.1
Nitab4.5_0002113g0190 Nicotiana tabacum HOM05D005156 ORTHO05D006710 3.7e-94 349.0 274 70.1
Dinv22149 Davidia involucrata HOM05D005156 ORTHO05D006710 6.3e-94 348.2 255 76.1
SMO147G0151 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 1.5e-92 343.6 300 62.7
Pp3c21_8650 Physcomitrium patens HOM05D005156 ORTHO05D006710 1.6e-89 333.6 312 59.6
Mapoly0048s0046 Marchantia polymorpha HOM05D005156 ORTHO05D006710 4.6e-89 332.0 299 59.5
CDE12G0606 Ceratophyllum demersum HOM05D005156 ORTHO05D006710 6.1e-89 331.6 268 69.0
DCAR_002091 Daucus carota HOM05D005156 ORTHO05D006710 1.1e-87 327.4 311 61.1
MBI15_g27827_MAGBIO Magnolia biondii HOM05D005156 ORTHO05D006710 7.4e-87 324.7 193 85.0
SHI21395 Sapria himalayana HOM05D005156 ORTHO05D006710 9.7e-87 324.3 282 63.8
SGA_v2.0_scaffold29G12276 Striga asiatica HOM05D005156 ORTHO05D006710 1.7e-86 323.6 194 85.6
CBR_g12801 Chara braunii HOM05D005156 ORTHO05D006710 1.5e-84 317.0 300 58.0
Zm00001eb251060 Zea mays HOM05D005156 ORTHO05D006710 1.3e-83 313.9 248 65.3
MCO15G168 Micromonas commoda HOM05D005156 ORTHO05D006710 5.0e-83 312.0 309 56.0
AagrBONN_evm.TU.Sc2ySwM_368.760 Anthoceros agrestis HOM05D005156 ORTHO05D006710 1.2e-81 307.4 311 56.3
Medtr4g031220 Medicago truncatula HOM05D005156 ORTHO05D006710 9.7e-79 297.7 195 81.0
Hma1.2p1_2309F.1_g319520 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 9.4e-74 281.2 216 72.7
PRCOL_00003626 Prasinoderma coloniale HOM05D005156 ORTHO05D006710 1.6e-73 280.4 301 51.5
BcaB02g11038 Brassica carinata HOM05D005156 ORTHO05D006710 7.0e-69 265.0 169 80.5
Cre02.g144000 Chlamydomonas reinhardtii HOM05D005156 ORTHO05D006710 3.2e-66 256.1 284 51.1
BcaB01g01392 Brassica carinata HOM05D005156 ORTHO05D006710 2.0e-63 246.9 169 77.5
SMO273G0012 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 1.5e-55 220.7 206 61.2
Cfa025164 Carpinus fangiana HOM05D005156 ORTHO05D006710 8.3e-54 214.9 306 40.5
Nn1g08054 Nelumbo nucifera HOM05D005156 ORTHO05D006710 1.0e-48 198.0 169 66.9
Nn1g08053 Nelumbo nucifera HOM05D005156 ORTHO05D006710 4.9e-46 189.1 124 78.2
COL.COLO4_04116 Corchorus olitorius HOM05D005156 ORTHO05D006710 4.3e-42 176.0 113 78.8
Haze_26247 Corylus avellana HOM05D005156 ORTHO05D006710 1.4e-40 171.0 278 39.6
Oeu016690.1 Olea europaea HOM05D005156 ORTHO05D006710 8.3e-30 135.2 208 43.3
ATR0585G005 Amborella trichopoda HOM05D005156 ORTHO05D006710 7.3e-26 122.1 90 66.7
Aqoxy1G04277 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 2.6e-23 113.6 76 72.4
SMO164G0249 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 2.1e-20 104.0 116 56.0
SMO147G0118 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 5.1e-19 99.4 221 36.7
Medtr4g031235 Medicago truncatula HOM05D005156 ORTHO05D006710 1.9e-18 97.4 91 58.2
MELO3C016526.2 Cucumis melo HOM05D005156 ORTHO05D006710 4.7e-17 92.8 62 80.6
SEGI_37101 Sequoiadendron giganteum HOM05D005156 ORTHO05D006710 8.1e-17 92.0 64 71.9
MELO3C034654.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.8e-16 90.9 54 88.9
MELO3C033715.2 Cucumis melo HOM05D005156 ORTHO05D006710 6.8e-16 89.0 53 83.0
MELO3C034160.2 Cucumis melo HOM05D005156 ORTHO05D006710 6.8e-16 89.0 54 83.3
MELO3C030457.2 Cucumis melo HOM05D005156 ORTHO05D006710 8.9e-16 88.6 58 81.0
MELO3C030656.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.2e-15 88.2 54 85.2
SalBow6G0988 Salvia bowleyana HOM05D005156 ORTHO05D006710 4.4e-15 86.3 59 72.9
EL10Ac8g19800 Beta vulgaris HOM05D005156 ORTHO05D006710 1.3e-14 84.7 97 55.7
EL10Ac2g02892 Beta vulgaris HOM05D005156 ORTHO05D039042 5.6e-10 69.3 48 68.8
EL10Ac8g20129 Beta vulgaris HOM05D005156 ORTHO05D000004 1.3e-09 68.2 64 59.4
EL10As2g23197 Beta vulgaris HOM05D005156 ORTHO05D039042 2.1e-09 67.4 60 58.3
Hma1.2p1_1115F.1_g258870 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 3.6e-09 66.6 88 44.3
EL10Ac9g22728 Beta vulgaris HOM05D005156 ORTHO05D000004 1.8e-08 64.3 35 85.7
Rhsim05G0077000 Rhododendron simsii HOM05D003003 ORTHO05D008343 3.1e-08 63.5 39 82.1


User provided reference genes

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