Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C647T6 Lonicera japonica HOM05D002396 ORTHO05D002779 8.7e-17 90.1 85 100.0
Lj2A648T13 Lonicera japonica HOM05D002396 ORTHO05D002779 1.5e-13 79.3 39 97.4
HanXRQChr12g0370361 Helianthus annuus HOM05D002396 ORTHO05D002779 7.2e-11 70.5 38 86.8
Lsat_1_v5_gn_8_21361 Lactuca sativa HOM05D002396 ORTHO05D002779 7.2e-11 70.5 38 86.8
Lj9A644T52 Lonicera japonica HOM05D002396 ORTHO05D002779 9.4e-11 70.1 38 86.8
Aqoxy1G00299 Aquilegia oxysepala HOM05D002396 ORTHO05D002779 2.1e-10 68.9 38 84.2
ECA233G5435 Erigeron canadensis HOM05D002396 ORTHO05D002779 2.1e-10 68.9 38 84.2
MSTRG.17579 Avicennia marina HOM05D002396 ORTHO05D002779 2.7e-10 68.6 36 88.9
Migut.N02302 Erythranthe guttata HOM05D002396 ORTHO05D002779 2.7e-10 68.6 36 88.9
PGR119G1899 Punica granatum HOM05D002396 ORTHO05D002779 2.7e-10 68.6 36 88.9
SalBow3G0072 Salvia bowleyana HOM05D002396 ORTHO05D002779 2.7e-10 68.6 36 88.9
EL10Ac7g15883 Beta vulgaris HOM05D002396 ORTHO05D002779 3.6e-10 68.2 34 94.1
Potri.016G121100 Populus trichocarpa HOM05D002396 ORTHO05D002779 3.6e-10 68.2 34 94.1
Hund22070 Selenicereus undatus HOM05D002396 ORTHO05D002779 3.6e-10 68.2 34 94.1
TWI77G0175 Tripterygium wilfordii HOM05D002396 ORTHO05D002779 3.6e-10 68.2 34 94.1
Ah.15g096650 Amaranthus hybridus HOM05D002396 ORTHO05D002779 4.6e-10 67.8 37 86.5
Cfa009729 Carpinus fangiana HOM05D002396 ORTHO05D002779 4.6e-10 67.8 39 87.2
CiPaw.13G163900 Carya illinoinensis HOM05D002396 ORTHO05D002779 4.6e-10 67.8 39 87.2
QL01p005503 Quercus lobata HOM05D002396 ORTHO05D002779 4.6e-10 67.8 38 81.6
CiPaw.14G121200 Carya illinoinensis HOM05D002396 ORTHO05D002779 6.1e-10 67.4 36 86.1
unitig_699.g19131 Utricularia gibba HOM05D002396 ORTHO05D002779 6.1e-10 67.4 37 83.8
Atru.chr5.3018 Acer truncatum HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
Actinidia01683 Actinidia chinensis HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
Aa31LG4G1240 Aethionema arabicum HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
BcaB05g25214 Brassica carinata HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
BcaC03g15917 Brassica carinata HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
BcaC08g47534 Brassica carinata HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
A02p23050 Brassica napus HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
A07p44760 Brassica napus HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
C02p36800 Brassica napus HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
C06p53580 Brassica napus HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
BolC6t40374H Brassica oleracea HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
BraA02t07303Z Brassica rapa HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
BraA07t31984Z Brassica rapa HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
CSS0012777 Camellia sinensis var. sinensis HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
CSS0015073 Camellia sinensis var. sinensis HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
Carub.0002s2661 Capsella rubella HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
CAN.G137.2 Capsicum annuum HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
CARHR073540 Cardamine hirsuta HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
CDE07G0369 Ceratophyllum demersum HOM05D002396 ORTHO05D002779 7.9e-10 67.0 36 86.1
AUR62012616 Chenopodium quinoa HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
AUR62036242 Chenopodium quinoa HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
Ciclev10027820m.g Citrus clementina HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
Cc01_g04700 Coffea canephora HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
COL.COLO4_31193 Corchorus olitorius HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
DCAR_011585 Daucus carota HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
Duzib187G0047 Durio zibethinus HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
Duzib212G0403 Durio zibethinus HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
FvH4_3g43240 Fragaria vesca HOM05D002396 ORTHO05D002779 7.9e-10 67.0 37 83.8
FAN11G2216 Fragaria x ananassa HOM05D002396 ORTHO05D002779 7.9e-10 67.0 37 83.8
FAN16G2660 Fragaria x ananassa HOM05D002396 ORTHO05D002779 7.9e-10 67.0 37 83.8
FAN21G1898 Fragaria x ananassa HOM05D002396 ORTHO05D002779 7.9e-10 67.0 37 83.8
FAN25G3119 Fragaria x ananassa HOM05D002396 ORTHO05D002779 7.9e-10 67.0 37 83.8
Gohir.A03G088400 Gossypium hirsutum HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
Gohir.D02G110100 Gossypium hirsutum HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
Gorai.005G123200 Gossypium raimondii HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
Hma1.2p1_0728F.1_g209280 Hydrangea macrophylla HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
MBI15_g08972_MAGBIO Magnolia biondii HOM05D002396 ORTHO05D002779 7.9e-10 67.0 38 81.6
MBI15_g46542_MAGBIO Magnolia biondii HOM05D002396 ORTHO05D002779 7.9e-10 67.0 38 81.6
Manes.08G094900 Manihot esculenta HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
Manes.09G108700 Manihot esculenta HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
Nitab4.5_0000556g0130 Nicotiana tabacum HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
Nitab4.5_0002778g0020 Nicotiana tabacum HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
Oeu035712.1 Olea europaea HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
Oeu055804.1 Olea europaea HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
PSO675G8719 Papaver somniferum HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
PSO732G0266 Papaver somniferum HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
PSO732G0489 Papaver somniferum HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
Peaxi162Scf00045g00141 Petunia axillaris HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
Rhsim01G0190300 Rhododendron simsii HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
RcHm_v2.0_Chr5g0077291 Rosa chinensis HOM05D002396 ORTHO05D002779 7.9e-10 67.0 37 83.8
Sabra16G0117000 Salix brachista HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
Sp5g34810 Schrenkiella parvula HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
Sc09g0000540 Simmondsia chinensis HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
Sopen08g001210 Solanum pennellii HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
THA.LOC104813591 Tarenaya hassleriana HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
Thecc.01G386000 Theobroma cacao HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
TAR633G0443 Trochodendron aralioides HOM05D002396 ORTHO05D002779 7.9e-10 67.0 34 91.2
Prupe.6G022700 Prunus persica HOM05D002396 ORTHO05D002779 1.0e-09 66.6 36 86.1
arahy.Tifrunner.gnm1.ann1.6Y08YU Arachis hypogaea HOM05D002396 ORTHO05D002779 1.4e-09 66.2 34 88.2
arahy.Tifrunner.gnm1.ann1.7S1CUY Arachis hypogaea HOM05D002396 ORTHO05D002779 1.4e-09 66.2 34 88.2
CAN.G1126.12 Capsicum annuum HOM05D002396 ORTHO05D002779 1.4e-09 66.2 34 88.2
ClCG02G023410 Citrullus lanatus HOM05D002396 ORTHO05D002779 1.4e-09 66.2 34 88.2
MELO3C014611.2 Cucumis melo HOM05D002396 ORTHO05D002779 1.4e-09 66.2 34 88.2
CsaV3_4G024100 Cucumis sativus L. HOM05D002396 ORTHO05D002779 1.4e-09 66.2 34 88.2
Medtr3g434840 Medicago truncatula HOM05D002396 ORTHO05D002779 1.4e-09 66.2 34 91.2
Sed0019733 Sechium edule HOM05D002396 ORTHO05D002779 1.4e-09 66.2 34 88.2
TWI53G1590 Tripterygium wilfordii HOM05D002396 ORTHO05D002779 1.4e-09 66.2 34 91.2
QL01p005537 Quercus lobata HOM05D002396 ORTHO05D002779 1.8e-09 65.9 34 88.2
Solyc08g005190.4 Solanum lycopersicum HOM05D002396 ORTHO05D002779 1.8e-09 65.9 34 88.2
Os12g0256300 Oryza sativa ssp. japonica HOM05D002396 ORTHO05D002779 2.3e-09 65.5 40 82.5
BcaB02g07238 Brassica carinata HOM05D002396 ORTHO05D002779 3.0e-09 65.1 34 88.2
BcaC08g45348 Brassica carinata HOM05D002396 ORTHO05D002779 3.0e-09 65.1 34 88.2
A07p26940 Brassica napus HOM05D002396 ORTHO05D002779 3.0e-09 65.1 34 88.2
C06p29620 Brassica napus HOM05D002396 ORTHO05D002779 3.0e-09 65.1 34 88.2
BolC2t09684H Brassica oleracea HOM05D002396 ORTHO05D002779 3.0e-09 65.1 32 93.8
BolC6t38127H Brassica oleracea HOM05D002396 ORTHO05D002779 3.0e-09 65.1 34 88.2
BraA07t30339Z Brassica rapa HOM05D002396 ORTHO05D002779 3.0e-09 65.1 34 88.2
Cpa.g.sc54.54 Carica papaya HOM05D002396 ORTHO05D002779 3.0e-09 65.1 32 93.8
Ca_26289_v3 Cicer arietinum L. HOM05D002396 ORTHO05D002779 3.0e-09 65.1 34 88.2
Eucgr.J00793 Eucalyptus grandis HOM05D002396 ORTHO05D002779 3.0e-09 65.1 32 93.8
Eucgr.J01046 Eucalyptus grandis HOM05D002396 ORTHO05D002779 3.0e-09 65.1 32 93.8
Thhalv10018086m.g Eutrema salsugineum HOM05D002396 ORTHO05D002779 3.0e-09 65.1 34 88.2
Glyma.08G302400 Glycine max HOM05D002396 ORTHO05D002779 3.0e-09 65.1 34 88.2
Glyma.13G178100 Glycine max HOM05D002396 ORTHO05D002779 3.0e-09 65.1 34 88.2
Glyma.18G117500 Glycine max HOM05D002396 ORTHO05D002779 3.0e-09 65.1 34 88.2
Lj6g0001394 Lotus japonicus HOM05D002396 ORTHO05D002779 3.0e-09 65.1 34 88.2
MD03G1023500 Malus domestica HOM05D002396 ORTHO05D002779 3.0e-09 65.1 34 88.2
Phvul.006G029300 Phaseolus vulgaris HOM05D002396 ORTHO05D002779 3.0e-09 65.1 34 88.2
Phvul.006G191000 Phaseolus vulgaris HOM05D002396 ORTHO05D002779 3.0e-09 65.1 34 88.2
Psat0s3534g0040 Pisum sativum HOM05D002396 ORTHO05D002779 3.0e-09 65.1 34 88.2
SEGI_07881 Sequoiadendron giganteum HOM05D002396 ORTHO05D002779 3.0e-09 65.1 34 88.2
Solyc04g079920.4 Solanum lycopersicum HOM05D002396 ORTHO05D002779 3.0e-09 65.1 34 88.2
Sopen04g033500 Solanum pennellii HOM05D002396 ORTHO05D002779 3.0e-09 65.1 34 88.2
PGSC0003DMG400027846 Solanum tuberosum HOM05D002396 ORTHO05D002779 3.0e-09 65.1 34 88.2
vmacro09706 Vaccinium macrocarpon HOM05D002396 ORTHO05D002779 3.0e-09 65.1 32 93.8
HPP92_016402 Vanilla planifolia HOM05D002396 ORTHO05D002779 3.0e-09 65.1 34 88.2
VMungo0540G0651 Vigna mungo HOM05D002396 ORTHO05D002779 3.0e-09 65.1 34 88.2
Zm00001eb410000 Zea mays HOM05D002396 ORTHO05D002779 3.0e-09 65.1 34 88.2
AL2G40450 Arabidopsis lyrata HOM05D002396 ORTHO05D002779 3.9e-09 64.7 34 88.2
AT1G80930 Arabidopsis thaliana HOM05D002396 ORTHO05D002779 3.9e-09 64.7 34 88.2
CANSAT64G2151 Cannabis sativa HOM05D002396 ORTHO05D002779 3.9e-09 64.7 38 76.3
Sed0022440 Sechium edule HOM05D002396 ORTHO05D002779 3.9e-09 64.7 34 85.3
PGSC0003DMG400022902 Solanum tuberosum HOM05D002396 ORTHO05D002779 3.9e-09 64.7 33 87.9
Thhalv10023142m.g Eutrema salsugineum HOM05D002396 ORTHO05D002779 5.1e-09 64.3 38 78.9
SGA_v2.0_scaffold3G01533 Striga asiatica HOM05D002396 ORTHO05D002779 5.1e-09 64.3 32 90.6
TPR.G8496 Trifolium pratense HOM05D002396 ORTHO05D002779 5.1e-09 64.3 34 88.2
Lalb_Chr18g0061001 Lupinus albus HOM05D002396 ORTHO05D002779 6.7e-09 63.9 34 85.3
Lalb_Chr20g0123641 Lupinus albus HOM05D002396 ORTHO05D002779 6.7e-09 63.9 34 85.3
MD11G1028600 Malus domestica HOM05D002396 ORTHO05D002779 6.7e-09 63.9 34 85.3
SHI32650 Sapria himalayana HOM05D002396 ORTHO05D002779 6.7e-09 63.9 34 85.3
Solyc03g122110.1 Solanum lycopersicum HOM05D002396 ORTHO05D002779 6.7e-09 63.9 35 80.0
Sopen03g040900 Solanum pennellii HOM05D002396 ORTHO05D002779 6.7e-09 63.9 35 80.0
SGA_v2.0_scaffold3G01551 Striga asiatica HOM05D002396 ORTHO05D002779 6.7e-09 63.9 32 87.5
EL10Ac3g05714 Beta vulgaris HOM05D002396 ORTHO05D002779 8.8e-09 63.5 34 88.2
Dinv08040 Davidia involucrata HOM05D002396 ORTHO05D002779 8.8e-09 63.5 34 85.3
Nitab4.5_0001477g0090 Nicotiana tabacum HOM05D002396 ORTHO05D002779 8.8e-09 63.5 34 88.2
QL01p005459 Quercus lobata HOM05D002396 ORTHO05D002779 1.1e-08 63.2 34 82.4
Lsat_1_v5_gn_8_21381 Lactuca sativa HOM05D002396 ORTHO05D002779 1.5e-08 62.8 33 87.9
Nitab4.5_0000244g0400 Nicotiana tabacum HOM05D002396 ORTHO05D002779 1.5e-08 62.8 34 82.4
Solyc03g116050.1 Solanum lycopersicum HOM05D002396 ORTHO05D002779 1.5e-08 62.8 32 87.5
Phvul.003G039000 Phaseolus vulgaris HOM05D002396 ORTHO05D002779 1.9e-08 62.4 34 85.3
Pp3c24_6660 Physcomitrium patens HOM05D002396 ORTHO05D002779 1.9e-08 62.4 31 90.3
SMO119G0042 Selaginella moellendorffii HOM05D002396 ORTHO05D002779 2.5e-08 62.0 38 73.7
Mapoly0072s0074 Marchantia polymorpha HOM05D002396 ORTHO05D002779 4.3e-08 61.2 32 84.4
Sopen03g035040 Solanum pennellii HOM05D002396 ORTHO05D002779 7.4e-08 60.5 32 84.4
AagrBONN_evm.TU.Sc2ySwM_228.5139 Anthoceros agrestis HOM05D002396 ORTHO05D002779 9.7e-08 60.1 34 79.4
Hma1.2p1_1553F.1_g290290 Hydrangea macrophylla HOM05D002396 ORTHO05D002779 9.7e-08 60.1 30 90.0
CBR_g25966 Chara braunii HOM05D002396 ORTHO05D002779 1.3e-07 59.7 34 76.5
FAN11G1601 Fragaria x ananassa HOM05D002396 ORTHO05D002779 1.7e-07 59.3 37 75.7
FAN21G4049 Fragaria x ananassa HOM05D002396 ORTHO05D002779 1.7e-07 59.3 37 75.7
LjContig00141g0022467 Lotus japonicus HOM05D002396 ORTHO05D002779 1.7e-07 59.3 34 79.4
MCO02G440 Micromonas commoda HOM05D002396 ORTHO05D002779 2.8e-07 58.5 36 72.2
FAN16G0907 Fragaria x ananassa HOM05D002396 ORTHO05D002779 3.7e-07 58.2 37 73.0
FAN25G2878 Fragaria x ananassa HOM05D002396 ORTHO05D002779 6.3e-07 57.4 36 75.0
Peaxi162Scf00000g00752 Petunia axillaris HOM05D002396 ORTHO05D002779 6.3e-07 57.4 34 76.5
CAN.G504.36 Capsicum annuum HOM05D002396 ORTHO05D002779 8.2e-07 57.0 35 77.1
Sed0023269 Sechium edule HOM05D002396 ORTHO05D002779 1.1e-06 56.6 32 78.1
FvH4_3g43230 Fragaria vesca HOM05D002396 ORTHO05D002779 1.4e-06 56.2 37 73.0
CAN.G504.73 Capsicum annuum HOM05D002396 ORTHO05D002779 2.4e-06 55.5 34 76.5
COL.COLO4_22130 Corchorus olitorius HOM05D002396 ORTHO05D002779 3.1e-06 55.1 27 92.6
Nitab4.5_0005609g0030 Nicotiana tabacum HOM05D002396 ORTHO05D002779 5.3e-06 54.3 26 96.2
Migut.J00785 Erythranthe guttata HOM05D002396 ORTHO05D002779 6.9e-06 53.9 32 68.8
Carub.0008s0985 Capsella rubella HOM05D002396 ORTHO05D002779 9.1e-06 53.5 35 74.3
PRCOL_00000882 Prasinoderma coloniale HOM05D002396 ORTHO05D002779 9.1e-06 53.5 35 62.9


User provided reference genes

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