Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C567G4 Lonicera japonica HOM05D004317 ORTHO05D005031 2.2e-243 845.1 408 100.0
TAR625G1069 Trochodendron aralioides HOM05D004317 ORTHO05D005031 3.9e-147 525.4 408 68.1
Haze_25055 Corylus avellana HOM05D004317 ORTHO05D005031 1.9e-146 523.1 408 67.4
Dinv19475 Davidia involucrata HOM05D004317 ORTHO05D005031 2.8e-145 519.2 408 67.2
Cfa002764 Carpinus fangiana HOM05D004317 ORTHO05D005031 1.1e-144 517.3 408 66.4
Dinv42682 Davidia involucrata HOM05D004317 ORTHO05D005031 3.4e-143 512.3 408 66.7
COL.COLO4_10999 Corchorus olitorius HOM05D004317 ORTHO05D005031 5.8e-143 511.5 409 67.2
Thecc.01G114600 Theobroma cacao HOM05D004317 ORTHO05D005031 1.9e-141 506.5 408 65.9
CANSAT01G1092 Cannabis sativa HOM05D004317 ORTHO05D005031 2.5e-141 506.1 408 65.0
Duzib147G1288 Durio zibethinus HOM05D004317 ORTHO05D005031 2.5e-141 506.1 408 66.2
CiPaw.04G091000 Carya illinoinensis HOM05D004317 ORTHO05D005031 1.6e-140 503.4 408 64.5
Lj4A864T19 Lonicera japonica HOM05D004317 ORTHO05D005031 2.1e-140 503.1 411 65.5
Rhsim10G0148900 Rhododendron simsii HOM05D004317 ORTHO05D005031 2.7e-140 502.7 409 66.3
MD08G1250200 Malus domestica HOM05D004317 ORTHO05D005031 4.6e-140 501.9 410 66.3
MSTRG.2526 Avicennia marina HOM05D004317 ORTHO05D005031 1.3e-139 500.4 408 65.7
QL06p031876 Quercus lobata HOM05D004317 ORTHO05D005031 2.3e-139 499.6 407 64.9
Hma1.2p1_0375F.1_g138790 Hydrangea macrophylla HOM05D004317 ORTHO05D005031 6.7e-139 498.0 408 65.2
Cpa.g.sc191.9 Carica papaya HOM05D004317 ORTHO05D005031 8.7e-139 497.7 408 64.0
Duzib264G0693 Durio zibethinus HOM05D004317 ORTHO05D005031 1.5e-138 496.9 410 64.6
MD15G1445400 Malus domestica HOM05D004317 ORTHO05D005031 1.5e-138 496.9 408 65.9
Potri.005G085100 Populus trichocarpa HOM05D004317 ORTHO05D005031 1.5e-138 496.9 408 63.5
Gohir.D11G232000 Gossypium hirsutum HOM05D004317 ORTHO05D005031 5.6e-138 495.0 408 64.7
Gorai.007G245100 Gossypium raimondii HOM05D004317 ORTHO05D005031 1.1e-136 490.7 408 64.0
PSO170G2871 Papaver somniferum HOM05D004317 ORTHO05D005031 1.8e-136 490.0 409 62.3
GSVIVG01022244001 Vitis vinifera HOM05D004317 ORTHO05D005031 2.4e-136 489.6 409 63.6
Nn1g05158 Nelumbo nucifera HOM05D004317 ORTHO05D005031 6.9e-136 488.0 410 63.7
Sabra05G0069900 Salix brachista HOM05D004317 ORTHO05D005031 6.9e-136 488.0 418 62.7
Nn5g28875 Nelumbo nucifera HOM05D004317 ORTHO05D005031 3.4e-135 485.7 313 76.4
Atru.chr4.2810 Acer truncatum HOM05D004317 ORTHO05D005031 1.0e-134 484.2 409 63.1
Ciclev10026038m.g Citrus clementina HOM05D004317 ORTHO05D005031 2.9e-134 482.6 408 63.2
Duzib187G1335 Durio zibethinus HOM05D004317 ORTHO05D005031 4.9e-134 481.9 408 63.0
FvH4_1g22810 Fragaria vesca HOM05D004317 ORTHO05D005031 4.9e-134 481.9 410 63.2
Peaxi162Scf00106g01615 Petunia axillaris HOM05D004317 ORTHO05D005031 8.4e-134 481.1 410 63.4
Cc11_g00180 Coffea canephora HOM05D004317 ORTHO05D005031 1.4e-133 480.3 400 63.5
FAN28G2916 Fragaria x ananassa HOM05D004317 ORTHO05D005031 1.4e-133 480.3 410 62.9
Migut.H02443 Erythranthe guttata HOM05D004317 ORTHO05D005031 4.2e-133 478.8 408 62.5
FAN19G1483 Fragaria x ananassa HOM05D004317 ORTHO05D005031 4.2e-133 478.8 410 62.7
Nitab4.5_0004977g0020 Nicotiana tabacum HOM05D004317 ORTHO05D005031 4.2e-133 478.8 410 63.9
Aqoxy6G00452 Aquilegia oxysepala HOM05D004317 ORTHO05D005031 7.1e-133 478.0 408 61.5
Solyc04g051700.3 Solanum lycopersicum HOM05D004317 ORTHO05D005031 7.1e-133 478.0 410 63.9
Oeu028366.1 Olea europaea HOM05D004317 ORTHO05D005031 9.3e-133 477.6 408 62.3
RcHm_v2.0_Chr2g0117121 Rosa chinensis HOM05D004317 ORTHO05D005031 1.6e-132 476.9 410 63.2
FAN26G1550 Fragaria x ananassa HOM05D004317 ORTHO05D005031 2.1e-132 476.5 410 62.4
Ca_17692_v3 Cicer arietinum L. HOM05D004317 ORTHO05D005031 2.7e-132 476.1 408 63.0
PSO210G1492 Papaver somniferum HOM05D004317 ORTHO05D005031 3.5e-132 475.7 408 60.8
vmacro12895 Vaccinium macrocarpon HOM05D004317 ORTHO05D005031 4.6e-132 475.3 461 59.0
Potri.007G080100 Populus trichocarpa HOM05D004317 ORTHO05D005031 7.9e-132 474.6 313 76.4
PGR102G1870 Punica granatum HOM05D004317 ORTHO05D005031 7.9e-132 474.6 408 61.8
TWI79G1778 Tripterygium wilfordii HOM05D004317 ORTHO05D005031 7.9e-132 474.6 314 75.8
Nitab4.5_0000184g0250 Nicotiana tabacum HOM05D004317 ORTHO05D005031 1.0e-131 474.2 410 63.7
vmacro18639 Vaccinium macrocarpon HOM05D004317 ORTHO05D005031 2.3e-131 473.0 408 63.7
PGSC0003DMG402031196 Solanum tuberosum HOM05D004317 ORTHO05D005031 3.0e-131 472.6 410 63.2
TPR.G2235 Trifolium pratense HOM05D004317 ORTHO05D005031 3.0e-131 472.6 408 62.7
Psat7g050920 Pisum sativum HOM05D004317 ORTHO05D005031 6.7e-131 471.5 408 63.0
Peaxi162Scf00270g00910 Petunia axillaris HOM05D004317 ORTHO05D005031 1.1e-130 470.7 410 62.0
Glyma.08G142300 Glycine max HOM05D004317 ORTHO05D005031 3.3e-130 469.2 409 61.9
Gorai.007G062600 Gossypium raimondii HOM05D004317 ORTHO05D005031 3.3e-130 469.2 402 62.7
Gohir.D11G057400 Gossypium hirsutum HOM05D004317 ORTHO05D005031 4.3e-130 468.8 402 62.7
Medtr8g091980 Medicago truncatula HOM05D004317 ORTHO05D005031 5.7e-130 468.4 416 61.5
VMungo0251G1621 Vigna mungo HOM05D004317 ORTHO05D005031 5.7e-130 468.4 408 61.3
FAN23G2660 Fragaria x ananassa HOM05D004317 ORTHO05D005031 9.7e-130 467.6 410 61.5
HanXRQChr02g0047931 Helianthus annuus HOM05D004317 ORTHO05D005031 9.7e-130 467.6 408 61.0
Sopen04g023080 Solanum pennellii HOM05D004317 ORTHO05D005031 9.7e-130 467.6 410 63.4
Lsat_1_v5_gn_6_7740 Lactuca sativa HOM05D004317 ORTHO05D005031 1.3e-129 467.2 407 62.2
DCAR_000764 Daucus carota HOM05D004317 ORTHO05D005031 1.6e-129 466.8 408 62.3
Eucgr.H04871 Eucalyptus grandis HOM05D004317 ORTHO05D005031 3.7e-129 465.7 408 61.0
Glyma.05G184400 Glycine max HOM05D004317 ORTHO05D005031 4.8e-129 465.3 409 61.6
Rhsim08G0005500 Rhododendron simsii HOM05D004317 ORTHO05D005031 6.3e-129 464.9 408 62.5
Gohir.A11G053900 Gossypium hirsutum HOM05D004317 ORTHO05D005031 1.1e-128 464.2 402 62.4
CAN.G241.17 Capsicum annuum HOM05D004317 ORTHO05D005031 1.4e-128 463.8 410 62.0
THA.LOC104819313 Tarenaya hassleriana HOM05D004317 ORTHO05D005031 1.8e-128 463.4 409 59.9
Lj4g0017689 Lotus japonicus HOM05D004317 ORTHO05D005031 3.1e-128 462.6 411 62.8
Phvul.002G265300 Phaseolus vulgaris HOM05D004317 ORTHO05D005031 4.1e-128 462.2 408 60.5
CiPaw.03G133600 Carya illinoinensis HOM05D004317 ORTHO05D005031 5.3e-128 461.8 392 62.5
ClCG02G000980 Citrullus lanatus HOM05D004317 ORTHO05D005031 5.3e-128 461.8 408 60.0
Lalb_Chr12g0203501 Lupinus albus HOM05D004317 ORTHO05D005031 5.3e-128 461.8 408 61.5
Sp2g27880 Schrenkiella parvula HOM05D004317 ORTHO05D005031 5.3e-128 461.8 410 61.2
CARHR278810 Cardamine hirsuta HOM05D004317 ORTHO05D005031 1.2e-127 460.7 410 61.0
EL10Ac6g14771 Beta vulgaris HOM05D004317 ORTHO05D005031 4.5e-127 458.8 408 58.6
MBI01_g44371_MAGBIO Magnolia biondii HOM05D004317 ORTHO05D005031 5.9e-127 458.4 430 59.5
CsaV3_2G017700 Cucumis sativus L. HOM05D004317 ORTHO05D005031 7.7e-127 458.0 408 59.8
AT5G64813 Arabidopsis thaliana HOM05D004317 ORTHO05D005031 1.3e-126 457.2 411 61.1
MELO3C020962.2 Cucumis melo HOM05D004317 ORTHO05D005031 1.3e-126 457.2 408 59.8
Oeu015853.1 Olea europaea HOM05D004317 ORTHO05D005031 1.7e-126 456.8 408 60.5
THA.LOC104799321 Tarenaya hassleriana HOM05D004317 ORTHO05D005031 5.0e-126 455.3 409 58.9
Carub.0008s2563 Capsella rubella HOM05D004317 ORTHO05D005031 6.5e-126 454.9 411 61.1
HanXRQChr03g0078021 Helianthus annuus HOM05D004317 ORTHO05D005031 6.5e-126 454.9 410 61.7
Sed0006410 Sechium edule HOM05D004317 ORTHO05D005031 6.5e-126 454.9 408 59.3
Sabra07G0067200 Salix brachista HOM05D004317 ORTHO05D005031 1.1e-125 454.1 479 54.1
arahy.Tifrunner.gnm1.ann1.N9CCL6 Arachis hypogaea HOM05D004317 ORTHO05D005031 4.2e-125 452.2 427 58.5
BraA06t26097Z Brassica rapa HOM05D004317 ORTHO05D005031 5.5e-125 451.8 416 60.6
ATR1120G075 Amborella trichopoda HOM05D004317 ORTHO05D005031 9.4e-125 451.1 313 71.6
Thhalv10004519m.g Eutrema salsugineum HOM05D004317 ORTHO05D005031 9.4e-125 451.1 411 60.3
AL8G42280 Arabidopsis lyrata HOM05D004317 ORTHO05D005031 2.1e-124 449.9 411 60.1
Gohir.A11G197500 Gossypium hirsutum HOM05D004317 ORTHO05D005031 2.7e-124 449.5 408 60.5
Lalb_Chr13g0296231 Lupinus albus HOM05D004317 ORTHO05D005031 2.7e-124 449.5 408 60.0
Sc07g0001570 Simmondsia chinensis HOM05D004317 ORTHO05D005031 2.7e-124 449.5 408 59.1
AUR62027164 Chenopodium quinoa HOM05D004317 ORTHO05D005031 3.6e-124 449.1 409 58.4
BcaB02g09831 Brassica carinata HOM05D004317 ORTHO05D005031 4.6e-124 448.7 411 60.3
Sc03g0004440 Simmondsia chinensis HOM05D004317 ORTHO05D005031 6.1e-124 448.4 409 59.2
arahy.Tifrunner.gnm1.ann1.IW8T8H Arachis hypogaea HOM05D004317 ORTHO05D005031 1.4e-123 447.2 425 58.1
GSVIVG01013682001 Vitis vinifera HOM05D004317 ORTHO05D005031 1.4e-123 447.2 409 59.2
BolC3t18396H Brassica oleracea HOM05D004317 ORTHO05D005031 1.8e-123 446.8 415 61.4
Aa31LG1G17120 Aethionema arabicum HOM05D004317 ORTHO05D005031 3.9e-123 445.7 408 59.3
A06p31600 Brassica napus HOM05D004317 ORTHO05D005031 8.8e-123 444.5 412 59.7
TAR381G0083 Trochodendron aralioides HOM05D004317 ORTHO05D005031 1.1e-122 444.1 410 60.7
MSTRG.23310 Avicennia marina HOM05D004317 ORTHO05D005031 3.3e-122 442.6 408 59.3
BcaC01g02714 Brassica carinata HOM05D004317 ORTHO05D005031 3.3e-122 442.6 412 59.7
C03p61360 Brassica napus HOM05D004317 ORTHO05D005031 3.3e-122 442.6 412 59.7
BcaB04g19996 Brassica carinata HOM05D004317 ORTHO05D005031 4.3e-122 442.2 411 59.9
Rhsim07G0116100 Rhododendron simsii HOM05D004317 ORTHO05D005031 7.4e-122 441.4 408 60.5
Ah.02g125940 Amaranthus hybridus HOM05D004317 ORTHO05D005031 9.7e-122 441.0 409 57.0
arahy.Tifrunner.gnm1.ann1.8U6WSJ Arachis hypogaea HOM05D004317 ORTHO05D005031 4.8e-121 438.7 403 59.3
Hund03530 Selenicereus undatus HOM05D004317 ORTHO05D005031 1.2e-119 434.1 407 56.5
CDE05G1892 Ceratophyllum demersum HOM05D004317 ORTHO05D005031 2.0e-119 433.3 404 58.4
ECA240G0243 Erigeron canadensis HOM05D004317 ORTHO05D005031 5.9e-119 431.8 408 58.3
Lalb_Chr11g0068101 Lupinus albus HOM05D004317 ORTHO05D005031 7.7e-119 431.4 314 68.8
arahy.Tifrunner.gnm1.ann1.QW6G0A Arachis hypogaea HOM05D004317 ORTHO05D005031 1.0e-118 431.0 405 59.0
A09p08860 Brassica napus HOM05D004317 ORTHO05D005031 1.9e-117 426.8 413 58.8
BraA09t36537Z Brassica rapa HOM05D004317 ORTHO05D005031 1.9e-117 426.8 413 59.6
BcaC04g23277 Brassica carinata HOM05D004317 ORTHO05D005031 3.6e-116 422.5 413 58.8
C09p10280 Brassica napus HOM05D004317 ORTHO05D005031 7.9e-116 421.4 413 58.6
BolC9t53928H Brassica oleracea HOM05D004317 ORTHO05D005031 7.9e-116 421.4 413 58.6
AL6G20330 Arabidopsis lyrata HOM05D004317 ORTHO05D005031 4.4e-114 415.6 409 56.7
Sp6g33500 Schrenkiella parvula HOM05D004317 ORTHO05D005031 5.7e-114 415.2 409 57.2
Sed0024973 Sechium edule HOM05D004317 ORTHO05D005031 1.3e-113 414.1 406 56.7
SalBow6G4125 Salvia bowleyana HOM05D004317 ORTHO05D005031 4.8e-113 412.1 408 56.1
Carub.0006s0835 Capsella rubella HOM05D004317 ORTHO05D005031 1.8e-112 410.2 403 56.3
Os10g0135200 Oryza sativa ssp. japonica HOM05D004317 ORTHO05D005031 5.3e-112 408.7 394 56.1
Zm00001eb224280 Zea mays HOM05D004317 ORTHO05D005031 5.9e-111 405.2 409 53.1
Manes.12G143400 Manihot esculenta HOM05D004317 ORTHO05D005031 1.4e-109 400.6 339 61.7
AT5G09910 Arabidopsis thaliana HOM05D004317 ORTHO05D005031 1.9e-109 400.2 409 56.0
unitig_0.g479 Utricularia gibba HOM05D004317 ORTHO05D005031 4.7e-108 395.6 411 54.0
AUR62034924 Chenopodium quinoa HOM05D004317 ORTHO05D005031 1.0e-107 394.4 417 53.7
Ah.05g168370 Amaranthus hybridus HOM05D004317 ORTHO05D005031 3.9e-107 392.5 409 54.3
EL10Ac1g01634 Beta vulgaris HOM05D004317 ORTHO05D005031 9.7e-106 387.9 461 49.7
AUR62003298 Chenopodium quinoa HOM05D004317 ORTHO05D005031 1.2e-103 380.9 338 59.8
Zm00001eb398890 Zea mays HOM05D004317 ORTHO05D005031 1.6e-103 380.6 407 52.6
PSO541G5773 Papaver somniferum HOM05D004317 ORTHO05D005031 1.7e-102 377.1 316 63.0
HPP92_009117 Vanilla planifolia HOM05D004317 ORTHO05D005031 2.9e-102 376.3 295 65.4
Os03g0242200 Oryza sativa ssp. japonica HOM05D004317 ORTHO05D005031 1.2e-100 370.9 313 61.7
SGA_v2.0_scaffold2G01290 Striga asiatica HOM05D004317 ORTHO05D005031 2.1e-100 370.2 408 52.5
PSO675G4086 Papaver somniferum HOM05D004317 ORTHO05D005031 3.1e-96 356.3 247 72.1
Prupe.1G587300 Prunus persica HOM05D004317 ORTHO05D005031 6.5e-94 348.6 237 75.5
DCAR_001376 Daucus carota HOM05D004317 ORTHO05D005031 1.9e-93 347.1 415 53.0
HPP92_021785 Vanilla planifolia HOM05D004317 ORTHO05D005031 1.2e-87 327.8 337 53.1
Mapoly0088s0081 Marchantia polymorpha HOM05D004317 ORTHO05D005031 7.0e-72 275.4 332 50.3
CDE11G1235 Ceratophyllum demersum HOM05D004317 ORTHO05D005031 9.2e-72 275.0 170 74.1
AUR62026610 Chenopodium quinoa HOM05D004317 ORTHO05D005031 9.2e-72 275.0 243 61.7
SMO364G0333 Selaginella moellendorffii HOM05D004317 ORTHO05D005031 3.4e-66 256.5 208 63.9
CARHR203430 Cardamine hirsuta HOM05D004317 ORTHO05D005031 1.7e-65 254.2 154 76.6
ECA233G0885 Erigeron canadensis HOM05D004317 ORTHO05D005031 7.3e-53 212.2 165 66.1
Oeu031971.2 Olea europaea HOM05D004317 ORTHO05D005031 8.4e-49 198.7 173 61.8
Nn3g19889 Nelumbo nucifera HOM05D004317 ORTHO05D005031 6.6e-38 162.5 101 77.2
AUR62039713 Chenopodium quinoa HOM05D004317 ORTHO05D005031 1.9e-32 144.4 113 62.8
SalBow5G1590 Salvia bowleyana HOM05D004317 ORTHO05D005031 5.4e-32 142.9 173 45.1
CBR_g23133 Chara braunii HOM05D000019 ORTHO05D000002 5.3e-27 126.3 138 44.9
SEGI_23806 Sequoiadendron giganteum HOM05D004317 ORTHO05D005031 2.3e-22 110.9 177 40.7
CDE11G1206 Ceratophyllum demersum HOM05D004317 ORTHO05D005031 4.8e-20 103.2 117 53.8
TAR628G1042 Trochodendron aralioides HOM05D004317 ORTHO05D005031 1.1e-19 102.1 67 70.1
MCO10G219 Micromonas commoda HOM05D004317 ORTHO05D005031 2.6e-18 97.4 197 34.0
Actinidia33578 Actinidia chinensis HOM05D004317 ORTHO05D005031 1.3e-17 95.1 99 55.6
Actinidia35263 Actinidia chinensis HOM05D004317 ORTHO05D005031 3.3e-13 80.5 129 38.0
CARHR203420 Cardamine hirsuta HOM05D004317 ORTHO05D005031 4.3e-13 80.1 124 48.4
Glyma.17G174700 Glycine max HOM05D004317 ORTHO05D005031 1.5e-10 71.6 65 53.8
Zm00001eb227990 Zea mays HOM05D000064 ORTHO05D008287 4.6e-07 60.1 104 30.8
COL.COLO4_36527 Corchorus olitorius HOM05D002016 ORTHO05D015438 6.1e-07 59.7 36 77.8
AL2G19240 Arabidopsis lyrata HOM05D004317 ORTHO05D005031 6.7e-06 56.2 67 49.3


User provided reference genes

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