Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 5.0e-166 587.8 317 100.0
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 1.8e-123 446.4 346 72.0
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 1.3e-121 440.3 346 70.8
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 3.7e-121 438.7 346 69.7
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 4.1e-120 435.3 346 69.9
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 1.6e-119 433.3 346 69.9
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 1.6e-119 433.3 346 69.7
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 3.5e-119 432.2 345 70.1
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 6.0e-119 431.4 336 71.1
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 7.8e-119 431.0 346 69.1
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 1.5e-117 426.8 336 70.2
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 1.9e-117 426.4 342 69.0
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 1.9e-117 426.4 346 69.7
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 2.5e-117 426.0 346 69.7
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 5.6e-117 424.9 346 69.1
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 6.2e-116 421.4 346 67.9
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 6.2e-116 421.4 346 67.1
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 1.4e-115 420.2 346 67.1
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 1.8e-115 419.9 346 67.3
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 2.3e-115 419.5 346 67.3
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 2.3e-115 419.5 343 70.0
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 4.0e-115 418.7 346 68.5
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 5.2e-115 418.3 347 68.3
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 8.9e-115 417.5 346 68.2
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.2e-114 417.2 346 68.2
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 2.0e-114 416.4 372 65.3
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 3.4e-114 415.6 346 67.9
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 4.4e-114 415.2 346 67.6
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 4.4e-114 415.2 346 67.9
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 1.3e-113 413.7 346 67.3
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.7e-113 413.3 346 67.6
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 3.7e-113 412.1 338 66.9
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 6.4e-113 411.4 343 67.9
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 8.3e-113 411.0 341 68.9
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 2.4e-112 409.5 346 67.3
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 1.7e-110 403.3 346 65.6
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 1.7e-110 403.3 335 68.1
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 6.6e-110 401.4 346 66.2
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 1.1e-109 400.6 320 71.6
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 1.1e-109 400.6 346 66.2
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 1.5e-109 400.2 338 66.3
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 1.9e-109 399.8 346 64.7
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 4.3e-109 398.7 348 66.4
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 5.6e-109 398.3 346 64.7
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 5.6e-109 398.3 346 63.9
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 2.8e-108 396.0 346 64.2
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 3.6e-108 395.6 336 66.7
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 3.6e-108 395.6 346 64.5
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 1.4e-107 393.7 338 65.1
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 3.1e-107 392.5 346 63.3
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.2e-106 390.6 316 68.0
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 1.2e-106 390.6 346 62.4
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 8.4e-105 384.4 346 63.3
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 8.4e-105 384.4 346 63.3
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 4.1e-104 382.1 346 63.0
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 5.4e-104 381.7 338 64.5
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 7.8e-103 377.9 346 63.6
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 2.3e-102 376.3 339 63.4
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 7.3e-101 371.3 346 61.0
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 9.6e-101 370.9 339 63.1
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 5.2e-99 365.2 346 60.7
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 1.5e-98 363.6 339 62.2
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 5.8e-98 361.7 346 60.7
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.3e-97 360.5 346 60.7
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 3.8e-97 359.0 346 60.4
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 8.4e-97 357.8 320 65.0
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 8.4e-97 357.8 332 62.7
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 2.4e-96 356.3 346 60.1
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 1.6e-95 353.6 290 67.2
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 1.0e-94 350.9 346 60.4
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 5.1e-94 348.6 338 61.2
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 1.1e-93 347.4 346 59.5
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.1e-92 343.2 346 58.1
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 4.8e-92 342.0 342 57.3
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.0e-90 336.7 346 57.8
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 2.6e-90 336.3 395 53.4
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 1.3e-89 334.0 346 57.2
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 2.9e-89 332.8 329 59.9
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 8.4e-89 331.3 346 57.8
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 2.4e-88 329.7 340 57.6
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 5.4e-88 328.6 346 56.9
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 9.3e-88 327.8 347 57.9
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 9.3e-88 327.8 331 58.0
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 4.6e-87 325.5 346 56.1
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 6.7e-86 321.6 346 55.8
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 8.7e-86 321.2 346 55.5
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 7.4e-85 318.2 284 65.5
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 9.6e-85 317.8 374 54.8
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 1.3e-84 317.4 346 56.1
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 5.3e-83 312.0 346 55.2
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 9.0e-83 311.2 323 53.9
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 3.4e-82 309.3 339 53.7
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 5.8e-82 308.5 290 60.0
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.7e-81 307.0 346 55.2
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.7e-81 307.0 346 55.2
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.1e-80 304.3 288 60.1
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 2.4e-80 303.1 319 58.0
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 5.5e-80 302.0 346 53.2
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 7.1e-80 301.6 318 55.3
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 9.3e-80 301.2 338 54.4
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 2.7e-79 299.7 267 61.4
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 6.0e-79 298.5 344 54.1
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 3.0e-78 296.2 339 55.2
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 6.7e-78 295.0 340 53.8
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 4.3e-77 292.4 346 50.9
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 5.6e-77 292.0 346 52.3
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 1.3e-76 290.8 339 53.4
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.6e-76 290.4 339 52.5
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 3.7e-76 289.3 346 52.0
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 1.4e-75 287.3 336 52.4
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 3.1e-75 286.2 335 52.8
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 4.0e-75 285.8 372 50.8
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 9.0e-75 284.6 312 54.8
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 9.0e-75 284.6 262 60.3
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 5.8e-74 282.0 308 57.5
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 1.9e-72 276.9 331 52.0
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 5.5e-72 275.4 340 55.0
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 9.3e-72 274.6 331 51.7
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 1.6e-71 273.9 331 51.7
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 1.6e-71 273.9 331 51.7
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 3.5e-71 272.7 317 54.3
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.3e-70 270.8 325 52.0
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 2.5e-69 266.5 341 49.6
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 2.5e-69 266.5 296 54.4
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 5.7e-69 265.4 347 50.7
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 1.6e-68 263.8 315 53.7
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 6.3e-68 261.9 291 54.6
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 9.0e-67 258.1 291 54.3
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.5e-66 257.3 317 53.3
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 1.3e-65 254.2 290 54.8
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.3e-65 254.2 281 57.3
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 2.9e-65 253.1 335 46.0
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 3.8e-65 252.7 326 50.9
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 2.5e-64 250.0 335 47.2
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 2.1e-63 246.9 310 51.3
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 8.7e-62 241.5 291 51.9
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 2.2e-60 236.9 346 45.1
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 1.8e-59 233.8 264 56.4
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 5.9e-58 228.8 259 56.0
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 7.7e-58 228.4 320 45.6
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 7.7e-58 228.4 168 74.4
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 2.2e-57 226.9 325 46.5
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 3.8e-57 226.1 282 52.8
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 7.2e-56 221.9 268 53.4
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 1.1e-53 214.5 138 86.2
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.8e-51 207.2 309 46.6
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 6.9e-51 205.3 346 42.5
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 5.9e-50 202.2 256 50.0
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 4.2e-48 196.1 343 36.7
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 5.5e-48 195.7 341 43.1
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 9.4e-48 194.9 310 44.5
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 3.6e-47 193.0 276 44.9
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 2.2e-44 183.7 339 41.6
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 2.6e-42 176.8 335 36.1
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 7.7e-42 175.3 290 41.0
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 1.5e-40 171.0 344 34.0
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 5.5e-40 169.1 152 65.1
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 3.0e-38 163.3 255 45.5
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 3.3e-37 159.8 208 51.4
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 3.1e-35 153.3 157 58.6
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 8.5e-33 145.2 280 41.8
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 2.7e-31 140.2 141 58.2
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 2.0e-29 134.0 186 46.8
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 3.7e-28 129.8 299 38.5
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 7.7e-26 122.1 145 54.5
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 5.0e-25 119.4 264 37.9
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 8.3e-20 102.1 277 37.5
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 4.5e-18 96.3 103 60.2
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 1.9e-16 90.9 261 34.5
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 1.9e-16 90.9 261 34.5
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 1.6e-15 87.8 55 85.5
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 1.4e-14 84.7 111 51.4
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 6.8e-14 82.4 50 88.0
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 1.6e-07 61.2 107 45.8
BcaC04g22938 Brassica carinata HOM05D001533 ORTHO05D019802 2.1e-07 60.8 101 44.6
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 5.2e-06 56.2 293 29.7


User provided reference genes

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