Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C426T11 Lonicera japonica HOM05D002943 ORTHO05D002685 3.7e-47 192.6 250 100.0
Rhsim10G0085400 Rhododendron simsii HOM05D002943 ORTHO05D002685 3.2e-11 73.2 50 72.0
vmacro05467 Vaccinium macrocarpon HOM05D002943 ORTHO05D002685 3.2e-11 73.2 216 77.8
CiPaw.07G041100 Carya illinoinensis HOM05D002943 ORTHO05D002685 1.2e-10 71.2 49 75.5
Hma1.2p1_0996F.1_g245920 Hydrangea macrophylla HOM05D002943 ORTHO05D002685 4.7e-10 69.3 56 66.1
PGR031G0631 Punica granatum HOM05D002943 ORTHO05D002685 6.1e-10 68.9 55 63.6
TWI74G1409 Tripterygium wilfordii HOM05D002943 ORTHO05D002685 1.8e-09 67.4 50 70.0
Dinv36997 Davidia involucrata HOM05D002943 ORTHO05D002685 2.3e-09 67.0 56 64.3
MBI16_g14668_MAGBIO Magnolia biondii HOM05D002943 ORTHO05D002685 2.3e-09 67.0 46 73.9
CANSAT01G2837 Cannabis sativa HOM05D002943 ORTHO05D002685 3.0e-09 66.6 50 66.0
Duzib187G0476 Durio zibethinus HOM05D002943 ORTHO05D002685 3.0e-09 66.6 59 59.3
Manes.12G119800 Manihot esculenta HOM05D002943 ORTHO05D002685 3.0e-09 66.6 56 64.3
Thecc.01G081600 Theobroma cacao HOM05D002943 ORTHO05D002685 3.0e-09 66.6 51 66.7
AUR62006609 Chenopodium quinoa HOM05D002943 ORTHO05D002685 5.2e-09 65.9 56 62.5
Actinidia11939 Actinidia chinensis HOM05D002943 ORTHO05D002685 6.8e-09 65.5 50 66.0
Eucgr.H02400 Eucalyptus grandis HOM05D002943 ORTHO05D002685 6.8e-09 65.5 56 60.7
TAR628G0306 Trochodendron aralioides HOM05D002943 ORTHO05D002685 6.8e-09 65.5 48 68.8
EL10Ac4g10037 Beta vulgaris HOM05D002943 ORTHO05D002685 8.8e-09 65.1 57 61.4
A06p18050 Brassica napus HOM05D009278 ORTHO05D002685 8.8e-09 65.1 58 62.1
AUR62000261 Chenopodium quinoa HOM05D002943 ORTHO05D002685 8.8e-09 65.1 56 62.5
Ciclev10026097m.g Citrus clementina HOM05D002943 ORTHO05D002685 8.8e-09 65.1 55 61.8
TWI53G1603 Tripterygium wilfordii HOM05D002943 ORTHO05D002685 1.2e-08 64.7 53 66.0
CSS0049699 Camellia sinensis var. sinensis HOM05D002943 ORTHO05D002685 1.5e-08 64.3 45 73.3
COL.COLO4_11661 Corchorus olitorius HOM05D002943 ORTHO05D002685 1.5e-08 64.3 52 63.5
Haze_03949 Corylus avellana HOM05D002943 ORTHO05D002685 1.5e-08 64.3 47 70.2
arahy.Tifrunner.gnm1.ann1.DT5KC6 Arachis hypogaea HOM05D002943 ORTHO05D002685 2.0e-08 63.9 54 66.7
arahy.Tifrunner.gnm1.ann1.MJC5Q8 Arachis hypogaea HOM05D002943 ORTHO05D002685 2.0e-08 63.9 54 66.7
CARHR279680 Cardamine hirsuta HOM05D002943 ORTHO05D002685 2.0e-08 63.9 31 93.5
RcHm_v2.0_Chr7g0189251 Rosa chinensis HOM05D009278 ORTHO05D002685 2.0e-08 63.9 31 90.3
arahy.Tifrunner.gnm1.ann1.RFJS66 Arachis hypogaea HOM05D002943 ORTHO05D002685 2.6e-08 63.5 49 67.3
BraA06t24894Z Brassica rapa HOM05D002943 ORTHO05D002685 2.6e-08 63.5 44 72.7
Cfa006809 Carpinus fangiana HOM05D002943 ORTHO05D002685 2.6e-08 63.5 55 61.8
Ca_14440_v3 Cicer arietinum L. HOM05D002943 ORTHO05D002685 2.6e-08 63.5 40 80.0
ECA238G4010 Erigeron canadensis HOM05D002943 ORTHO05D002685 2.6e-08 63.5 56 62.5
Lj4g0007346 Lotus japonicus HOM05D002943 ORTHO05D002685 2.6e-08 63.5 40 80.0
Medtr4g119620 Medicago truncatula HOM05D002943 ORTHO05D002685 2.6e-08 63.5 40 80.0
TPR.G3207 Trifolium pratense HOM05D002943 ORTHO05D002685 2.6e-08 63.5 40 80.0
VMungo1215G0795 Vigna mungo HOM05D002943 ORTHO05D002685 2.6e-08 63.5 50 68.0
Phvul.003G104000 Phaseolus vulgaris HOM05D002943 ORTHO05D002685 3.4e-08 63.2 50 68.0
Dinv26988 Davidia involucrata HOM05D002943 ORTHO05D002685 4.4e-08 62.8 56 60.7
Lalb_Chr07g0177661 Lupinus albus HOM05D002943 ORTHO05D002685 4.4e-08 62.8 50 62.0
Peaxi162Scf00939g00121 Petunia axillaris HOM05D002943 ORTHO05D002685 4.4e-08 62.8 55 63.6
AL8G43360 Arabidopsis lyrata HOM05D001456 ORTHO05D013730 5.7e-08 62.4 38 71.1
CSS0032407 Camellia sinensis var. sinensis HOM05D002943 ORTHO05D002685 5.7e-08 62.4 31 90.3
Cpa.g.sc129.34 Carica papaya HOM05D002943 ORTHO05D002685 7.5e-08 62.0 49 63.3
Nitab4.5_0000396g0220 Nicotiana tabacum HOM05D002943 ORTHO05D002685 1.3e-07 61.2 51 66.7
Psat0s2006g0120 Pisum sativum HOM05D002943 ORTHO05D002685 1.3e-07 61.2 40 77.5
Potri.005G148500 Populus trichocarpa HOM05D002943 ORTHO05D002685 1.3e-07 61.2 60 58.3
Sc09g0001310 Simmondsia chinensis HOM05D002943 ORTHO05D002685 1.3e-07 61.2 54 66.7
TAR376G1143 Trochodendron aralioides HOM05D002943 ORTHO05D002685 1.3e-07 61.2 48 68.8
Atru.chr3.1120 Acer truncatum HOM05D002943 ORTHO05D002685 1.7e-07 60.8 41 70.7
PSO541G4758 Papaver somniferum HOM05D002943 ORTHO05D002685 1.7e-07 60.8 59 57.6
Sed0027180 Sechium edule HOM05D002943 ORTHO05D002685 1.7e-07 60.8 46 67.4
DCAR_010766 Daucus carota HOM05D000670 ORTHO05D002685 2.2e-07 60.5 29 89.7
Duzib147G1423 Durio zibethinus HOM05D002943 ORTHO05D002685 2.2e-07 60.5 50 62.0
Lalb_Chr13g0303681 Lupinus albus HOM05D002943 ORTHO05D002685 2.2e-07 60.5 50 60.0
Nn1g05949 Nelumbo nucifera HOM05D002943 ORTHO05D002685 2.2e-07 60.5 43 72.1
Oeu054737.1 Olea europaea HOM05D009278 ORTHO05D002685 2.2e-07 60.5 30 86.7
Sabra07G0007300 Salix brachista HOM05D002943 ORTHO05D002685 2.8e-07 60.1 53 60.4
HPP92_012269 Vanilla planifolia HOM05D002943 ORTHO05D002685 2.8e-07 60.1 44 65.9
ClCG01G018070 Citrullus lanatus HOM05D002943 ORTHO05D002685 3.7e-07 59.7 56 60.7
Ciclev10033651m.g Citrus clementina HOM05D002943 ORTHO05D002685 3.7e-07 59.7 55 56.4
CsaV3_6G044600 Cucumis sativus L. HOM05D002943 ORTHO05D002685 3.7e-07 59.7 59 55.9
Gohir.D11G212900 Gossypium hirsutum HOM05D002943 ORTHO05D002685 3.7e-07 59.7 51 62.7
Gorai.007G228800 Gossypium raimondii HOM05D002943 ORTHO05D002685 3.7e-07 59.7 51 62.7
Lsat_1_v5_gn_2_81981 Lactuca sativa HOM05D002943 ORTHO05D002685 3.7e-07 59.7 61 55.7
Oeu025000.1 Olea europaea HOM05D002943 ORTHO05D002685 3.7e-07 59.7 59 59.3
Hund07388 Selenicereus undatus HOM05D002943 ORTHO05D002685 3.7e-07 59.7 50 60.0
AL8G43350 Arabidopsis lyrata HOM05D000117 ORTHO05D000070 4.9e-07 59.3 29 86.2
Gohir.A11G210200 Gossypium hirsutum HOM05D002943 ORTHO05D002685 4.9e-07 59.3 51 62.7
HanXRQChr14g0447041 Helianthus annuus HOM05D002943 ORTHO05D002685 4.9e-07 59.3 54 61.1
Potri.007G009500 Populus trichocarpa HOM05D002943 ORTHO05D002685 4.9e-07 59.3 53 58.5
QL06p037843 Quercus lobata HOM05D002943 ORTHO05D002685 4.9e-07 59.3 49 65.3
Aqoxy5G01866 Aquilegia oxysepala HOM05D002943 ORTHO05D002685 6.3e-07 58.9 40 72.5
arahy.Tifrunner.gnm1.ann1.HA7VEA Arachis hypogaea HOM05D001631 ORTHO05D003183 6.3e-07 58.9 52 59.6
FvH4_1g18760 Fragaria vesca HOM05D002943 ORTHO05D002685 6.3e-07 58.9 44 68.2
FAN19G1191 Fragaria x ananassa HOM05D002943 ORTHO05D002685 6.3e-07 58.9 44 68.2
PSO675G4958 Papaver somniferum HOM05D002943 ORTHO05D002685 6.3e-07 58.9 59 55.9
Prupe.6G211800 Prunus persica HOM05D002943 ORTHO05D002685 6.3e-07 58.9 42 71.4
Lalb_Chr21g0306431 Lupinus albus HOM05D002943 ORTHO05D002685 8.3e-07 58.5 59 54.2
Nitab4.5_0000093g0160 Nicotiana tabacum HOM05D002943 ORTHO05D002685 8.3e-07 58.5 42 71.4
FAN23G1457 Fragaria x ananassa HOM05D002943 ORTHO05D002685 1.1e-06 58.2 42 69.0
FAN28G1172 Fragaria x ananassa HOM05D002943 ORTHO05D002685 1.1e-06 58.2 42 69.0
Glyma.17G025400 Glycine max HOM05D002943 ORTHO05D002685 1.4e-06 57.8 49 65.3
MD15G1305300 Malus domestica HOM05D009278 ORTHO05D002685 1.4e-06 57.8 31 77.4
MD01G1047000 Malus domestica HOM05D002943 ORTHO05D002685 1.8e-06 57.4 42 69.0
MD16G1282400 Malus domestica HOM05D002943 ORTHO05D002685 1.8e-06 57.4 52 61.5
RcHm_v2.0_Chr2g0109631 Rosa chinensis HOM05D002943 ORTHO05D002685 1.8e-06 57.4 44 68.2
PGSC0003DMG401030621 Solanum tuberosum HOM05D002943 ORTHO05D002685 1.8e-06 57.4 50 64.0
Potri.002G051900 Populus trichocarpa HOM05D002943 ORTHO05D002685 2.4e-06 57.0 57 52.6
QL12p021366 Quercus lobata HOM05D002943 ORTHO05D002685 2.4e-06 57.0 46 63.0
SalBow3G3920 Salvia bowleyana HOM05D002943 ORTHO05D002685 2.4e-06 57.0 53 56.6
SMO119G0268 Selaginella moellendorffii HOM05D002943 ORTHO05D002685 2.4e-06 57.0 50 54.0
HPP92_017535 Vanilla planifolia HOM05D002943 ORTHO05D002685 2.4e-06 57.0 50 58.0
Lj2A1170T16 Lonicera japonica HOM05D002943 ORTHO05D002685 3.1e-06 56.6 54 53.7
EL10Ac5g10558 Beta vulgaris HOM05D002943 ORTHO05D002685 4.1e-06 56.2 48 58.3
Medtr1g072140 Medicago truncatula HOM05D002943 ORTHO05D002685 4.1e-06 56.2 50 58.0
Sc17g0001450 Simmondsia chinensis HOM05D002943 ORTHO05D002685 4.1e-06 56.2 59 50.8
Solyc02g091790.3 Solanum lycopersicum HOM05D002943 ORTHO05D002685 4.1e-06 56.2 50 64.0
Sopen02g036370 Solanum pennellii HOM05D002943 ORTHO05D002685 4.1e-06 56.2 50 64.0
Ah.06g195170 Amaranthus hybridus HOM05D002943 ORTHO05D002685 5.4e-06 55.8 43 67.4
Glyma.07G248900 Glycine max HOM05D002943 ORTHO05D002685 5.4e-06 55.8 42 71.4
MBI04_g36449_MAGBIO Magnolia biondii HOM05D002943 ORTHO05D002685 5.4e-06 55.8 46 54.3
SGA_v2.0_scaffold121G33104 Striga asiatica HOM05D002943 ORTHO05D002685 5.4e-06 55.8 53 58.5
TAR365G0759 Trochodendron aralioides HOM05D002943 ORTHO05D002685 5.4e-06 55.8 49 55.1
Migut.H00305 Erythranthe guttata HOM05D002943 ORTHO05D002685 7.0e-06 55.5 53 56.6
Ah.11g050560 Amaranthus hybridus HOM05D002943 ORTHO05D002685 9.2e-06 55.1 59 52.5
Cfa006157 Carpinus fangiana HOM05D002943 ORTHO05D002685 9.2e-06 55.1 48 56.2
CDE04G2187 Ceratophyllum demersum HOM05D002943 ORTHO05D002685 9.2e-06 55.1 48 62.5
SEGI_40787 Sequoiadendron giganteum HOM05D002943 ORTHO05D002685 9.2e-06 55.1 42 64.3


User provided reference genes

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