Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C38G11 Lonicera japonica HOM05D001439 ORTHO05D007599 1.1e-59 233.0 113 100.0
Lj2A362T44 Lonicera japonica HOM05D001439 ORTHO05D007599 3.1e-30 135.2 93 73.1
Actinidia03300 Actinidia chinensis HOM05D001439 ORTHO05D007599 4.0e-25 118.2 93 65.6
Actinidia06779 Actinidia chinensis HOM05D001439 ORTHO05D007599 8.9e-25 117.1 92 66.3
CSS0026010 Camellia sinensis var. sinensis HOM05D001439 ORTHO05D007599 1.5e-24 116.3 86 68.6
Ciclev10014094m.g Citrus clementina HOM05D001439 ORTHO05D007599 5.7e-24 114.4 89 65.2
Manes.12G058700 Manihot esculenta HOM05D001439 ORTHO05D007599 7.5e-24 114.0 89 68.5
Thecc.01G203900 Theobroma cacao HOM05D001439 ORTHO05D007599 7.5e-24 114.0 103 59.2
COL.COLO4_19723 Corchorus olitorius HOM05D001439 ORTHO05D007599 9.8e-24 113.6 93 65.6
Hma1.2p1_0345F.1_g131230 Hydrangea macrophylla HOM05D001439 ORTHO05D007599 2.2e-23 112.5 88 67.0
Hma1.2p1_0345F.1_g131250 Hydrangea macrophylla HOM05D001439 ORTHO05D007599 2.2e-23 112.5 88 67.0
Prupe.3G029400 Prunus persica HOM05D001439 ORTHO05D007599 2.2e-23 112.5 89 64.0
QL04p042996 Quercus lobata HOM05D001439 ORTHO05D007599 2.9e-23 112.1 93 61.3
CiPaw.04G180000 Carya illinoinensis HOM05D001439 ORTHO05D007599 3.7e-23 111.7 86 67.4
Duzib138G1511 Durio zibethinus HOM05D001439 ORTHO05D007599 3.7e-23 111.7 107 56.1
Rhsim09G0138700 Rhododendron simsii HOM05D001439 ORTHO05D007599 3.7e-23 111.7 92 63.0
FAN14G5823 Fragaria x ananassa HOM05D001439 ORTHO05D007599 4.9e-23 111.3 88 63.6
Sc09g0004660 Simmondsia chinensis HOM05D001439 ORTHO05D007599 4.9e-23 111.3 85 67.1
Haze_24510 Corylus avellana HOM05D001439 ORTHO05D007599 6.4e-23 110.9 93 62.4
FAN09G0293 Fragaria x ananassa HOM05D001439 ORTHO05D007599 6.4e-23 110.9 88 63.6
FvH4_6g36260 Fragaria vesca HOM05D001439 ORTHO05D007599 8.3e-23 110.5 88 63.6
FAN02G0189 Fragaria x ananassa HOM05D001439 ORTHO05D007599 8.3e-23 110.5 88 63.6
FAN05G2787 Fragaria x ananassa HOM05D001439 ORTHO05D007599 1.1e-22 110.2 88 63.6
FAN14G5546 Fragaria x ananassa HOM05D001439 ORTHO05D007599 1.1e-22 110.2 88 63.6
Gohir.A11G145900 Gossypium hirsutum HOM05D001439 ORTHO05D007599 1.4e-22 109.8 93 62.4
Gohir.D11G152000 Gossypium hirsutum HOM05D001439 ORTHO05D007599 1.4e-22 109.8 93 62.4
Atru.chr6.3472 Acer truncatum HOM05D001439 ORTHO05D007599 1.8e-22 109.4 89 65.2
MD17G1156400 Malus domestica HOM05D001439 ORTHO05D007599 1.8e-22 109.4 88 62.5
MSTRG.9006 Avicennia marina HOM05D001439 ORTHO05D007599 5.4e-22 107.8 91 65.9
Gorai.007G162700 Gossypium raimondii HOM05D001439 ORTHO05D007599 7.0e-22 107.5 93 61.3
RcHm_v2.0_Chr2g0148261 Rosa chinensis HOM05D001439 ORTHO05D007599 9.2e-22 107.1 88 60.2
Cpa.g.sc8.11 Carica papaya HOM05D001439 ORTHO05D007599 1.2e-21 106.7 109 50.5
Cfa002303 Carpinus fangiana HOM05D001439 ORTHO05D007599 1.2e-21 106.7 89 62.9
MD09G1170800 Malus domestica HOM05D001439 ORTHO05D007599 1.2e-21 106.7 88 64.8
Oeu016030.1 Olea europaea HOM05D001439 ORTHO05D007599 1.2e-21 106.7 86 67.4
vmacro10348 Vaccinium macrocarpon HOM05D001439 ORTHO05D007599 1.2e-21 106.7 92 59.8
GSVIVG01036776001 Vitis vinifera HOM05D001439 ORTHO05D007599 1.2e-21 106.7 89 65.2
Migut.F00815 Erythranthe guttata HOM05D001439 ORTHO05D007599 1.6e-21 106.3 85 63.5
Cc02_g09100 Coffea canephora HOM05D001439 ORTHO05D007599 2.0e-21 105.9 93 59.1
ECA238G3650 Erigeron canadensis HOM05D001439 ORTHO05D007599 2.0e-21 105.9 90 61.1
Sabra14G0132600 Salix brachista HOM05D001439 ORTHO05D007599 5.9e-21 104.4 89 64.0
SalBow3G1926 Salvia bowleyana HOM05D001439 ORTHO05D007599 7.8e-21 104.0 80 67.5
TAR375G1143 Trochodendron aralioides HOM05D001439 ORTHO05D007599 2.3e-20 102.4 90 58.9
DCAR_028382 Daucus carota HOM05D001439 ORTHO05D007599 3.0e-20 102.1 94 59.6
Duzib133G1111 Durio zibethinus HOM05D001439 ORTHO05D007599 3.0e-20 102.1 93 60.2
ATR1098G049 Amborella trichopoda HOM05D001439 ORTHO05D007599 8.6e-20 100.5 108 50.0
HanXRQChr07g0200581 Helianthus annuus HOM05D001439 ORTHO05D007599 1.5e-19 99.8 82 65.9
TWI36G0060 Tripterygium wilfordii HOM05D001439 ORTHO05D007599 1.9e-19 99.4 89 57.3
Potri.014G173300 Populus trichocarpa HOM05D001439 ORTHO05D007599 2.5e-19 99.0 89 60.7
MBI18_g11240_MAGBIO Magnolia biondii HOM05D001439 ORTHO05D007599 4.3e-19 98.2 89 57.3
Hund22225 Selenicereus undatus HOM05D001439 ORTHO05D007599 5.6e-19 97.8 86 57.0
AUR62037546 Chenopodium quinoa HOM05D001439 ORTHO05D007599 7.3e-19 97.4 85 61.2
THA.LOC104815378 Tarenaya hassleriana HOM05D001439 ORTHO05D007599 7.3e-19 97.4 88 54.5
arahy.Tifrunner.gnm1.ann1.CH5A50 Arachis hypogaea HOM05D001439 ORTHO05D007599 1.6e-18 96.3 101 55.4
Sp7g09140 Schrenkiella parvula HOM05D001439 ORTHO05D007599 2.1e-18 95.9 88 56.8
HanXRQChr14g0455641 Helianthus annuus HOM05D001439 ORTHO05D007599 2.8e-18 95.5 83 63.9
AUR62035538 Chenopodium quinoa HOM05D001439 ORTHO05D007599 3.6e-18 95.1 85 60.0
Lsat_1_v5_gn_2_107580 Lactuca sativa HOM05D001439 ORTHO05D007599 3.6e-18 95.1 91 59.3
arahy.Tifrunner.gnm1.ann1.0SQJ2Y Arachis hypogaea HOM05D001439 ORTHO05D007599 4.7e-18 94.7 101 54.5
CANSAT56G1506 Cannabis sativa HOM05D001439 ORTHO05D007599 4.7e-18 94.7 80 62.5
CANSAT56G2417 Cannabis sativa HOM05D001439 ORTHO05D007599 4.7e-18 94.7 80 62.5
Ca_17413_v3 Cicer arietinum L. HOM05D001439 ORTHO05D007599 4.7e-18 94.7 95 57.9
Psat7g021400 Pisum sativum HOM05D001439 ORTHO05D007599 4.7e-18 94.7 77 62.3
CARHR218110 Cardamine hirsuta HOM05D001439 ORTHO05D007599 8.0e-18 94.0 88 55.7
EL10Ac4g08849 Beta vulgaris HOM05D001439 ORTHO05D007599 1.1e-17 93.6 77 63.6
Eucgr.K01361 Eucalyptus grandis HOM05D001439 ORTHO05D007599 1.1e-17 93.6 85 58.8
MSTRG.9529 Avicennia marina HOM05D001439 ORTHO05D007599 1.4e-17 93.2 84 60.7
AT4G12750 Arabidopsis thaliana HOM05D001439 ORTHO05D007599 1.8e-17 92.8 88 54.5
Thhalv10024262m.g Eutrema salsugineum HOM05D001439 ORTHO05D007599 1.8e-17 92.8 83 57.8
PSO063G6089 Papaver somniferum HOM05D001439 ORTHO05D007599 1.8e-17 92.8 80 62.5
PGSC0003DMG400000999 Solanum tuberosum HOM05D001439 ORTHO05D007599 1.8e-17 92.8 84 58.3
THA.LOC104826638 Tarenaya hassleriana HOM05D001439 ORTHO05D007599 1.8e-17 92.8 86 57.0
TWI18G1300 Tripterygium wilfordii HOM05D001439 ORTHO05D007599 1.8e-17 92.8 89 55.1
C03p90000 Brassica napus HOM05D001439 ORTHO05D007599 2.3e-17 92.4 88 56.8
PGR044G2616 Punica granatum HOM05D001439 ORTHO05D007599 2.3e-17 92.4 93 55.9
BcaC01g01268 Brassica carinata HOM05D001439 ORTHO05D007599 4.0e-17 91.7 88 56.8
BolC3t21320H Brassica oleracea HOM05D001439 ORTHO05D007599 4.0e-17 91.7 88 56.8
CAN.G1256.6 Capsicum annuum HOM05D001439 ORTHO05D007599 4.0e-17 91.7 84 57.1
PSO782G0625 Papaver somniferum HOM05D001439 ORTHO05D007599 5.2e-17 91.3 80 61.2
Lalb_Chr05g0223731 Lupinus albus HOM05D001439 ORTHO05D007599 6.8e-17 90.9 95 56.8
Lj4g0024460 Lotus japonicus HOM05D001439 ORTHO05D007599 1.2e-16 90.1 89 58.4
Nn4g24992 Nelumbo nucifera HOM05D001439 ORTHO05D007599 1.2e-16 90.1 86 59.3
Aa31sc565G40 Aethionema arabicum HOM05D001439 ORTHO05D007599 1.5e-16 89.7 83 55.4
Carub.0007s3007 Capsella rubella HOM05D001439 ORTHO05D007599 1.5e-16 89.7 83 57.8
Solyc11g006200.2 Solanum lycopersicum HOM05D001439 ORTHO05D007599 1.5e-16 89.7 84 57.1
Sopen11g002130 Solanum pennellii HOM05D001439 ORTHO05D007599 1.5e-16 89.7 84 57.1
TPR.G22823 Trifolium pratense HOM05D001439 ORTHO05D007599 1.5e-16 89.7 82 58.5
A08p02880 Brassica napus HOM05D001439 ORTHO05D007599 2.0e-16 89.4 88 54.5
BraA08t32320Z Brassica rapa HOM05D001439 ORTHO05D007599 2.0e-16 89.4 88 54.5
Glyma.08G028000 Glycine max HOM05D001439 ORTHO05D007599 3.4e-16 88.6 83 57.8
Lalb_Chr09g0331921 Lupinus albus HOM05D001439 ORTHO05D007599 3.4e-16 88.6 89 57.3
Nitab4.5_0005417g0010 Nicotiana tabacum HOM05D001439 ORTHO05D007599 9.8e-16 87.0 84 56.0
Aqoxy1G03116 Aquilegia oxysepala HOM05D001439 ORTHO05D007599 1.3e-15 86.7 86 59.3
Nitab4.5_0003799g0010 Nicotiana tabacum HOM05D001439 ORTHO05D007599 1.3e-15 86.7 84 56.0
BcaB04g17209 Brassica carinata HOM05D001439 ORTHO05D007599 1.7e-15 86.3 82 58.5
Glyma.05G221500 Glycine max HOM05D001439 ORTHO05D007599 1.7e-15 86.3 83 56.6
AL9U11900 Arabidopsis lyrata HOM05D001439 ORTHO05D007599 2.9e-15 85.5 82 54.9
Ah.04g162790 Amaranthus hybridus HOM05D001439 ORTHO05D007599 6.4e-15 84.3 82 56.1
SGA_v2.0_scaffold90G27703 Striga asiatica HOM05D000200 ORTHO05D000262 1.9e-14 82.8 112 45.5
VMungo0251G2358 Vigna mungo HOM05D001439 ORTHO05D007599 1.9e-14 82.8 83 55.4
ClCG09G010560 Citrullus lanatus HOM05D001439 ORTHO05D007599 4.1e-14 81.6 91 51.6
Phvul.002G303200 Phaseolus vulgaris HOM05D001439 ORTHO05D007599 4.1e-14 81.6 83 56.6
MELO3C024106.2 Cucumis melo HOM05D001439 ORTHO05D007599 5.4e-14 81.3 90 52.2
CsaV3_7G023680 Cucumis sativus L. HOM05D001439 ORTHO05D007599 1.6e-13 79.7 86 54.7
Sed0014026 Sechium edule HOM05D001439 ORTHO05D007599 1.6e-13 79.7 86 53.5
unitig_46.g18727 Utricularia gibba HOM05D001439 ORTHO05D007599 2.3e-12 75.9 79 51.9
HPP92_025329 Vanilla planifolia HOM05D001439 ORTHO05D007599 2.3e-12 75.9 73 54.8
Oeu012227.1 Olea europaea HOM05D001439 ORTHO05D007599 3.9e-12 75.1 53 75.5
Peaxi162Scf00120g00521 Petunia axillaris HOM05D001439 ORTHO05D007599 3.9e-12 75.1 83 49.4
CDE01G0356 Ceratophyllum demersum HOM05D001439 ORTHO05D007599 3.3e-11 72.0 92 46.7
CDE02G3848 Ceratophyllum demersum HOM05D001439 ORTHO05D007599 3.3e-11 72.0 86 48.8
Zm00001eb061430 Zea mays HOM05D001439 ORTHO05D007599 4.3e-11 71.6 79 53.2
Dinv30126 Davidia involucrata HOM05D001439 ORTHO05D007599 1.1e-09 67.0 81 45.7
SHI10198 Sapria himalayana HOM05D001439 ORTHO05D007599 1.5e-08 63.2 52 61.5
Gorai.008G155100 Gossypium raimondii HOM05D001439 ORTHO05D002726 2.2e-07 59.3 92 40.2
AUR62038987 Chenopodium quinoa HOM05D001439 ORTHO05D002726 2.9e-07 58.9 89 38.2
Glyma.13G235300 Glycine max HOM05D001439 ORTHO05D002726 4.9e-07 58.2 48 58.3
TAR626G0101 Trochodendron aralioides HOM05D001439 ORTHO05D002726 4.9e-07 58.2 95 37.9
Gohir.A12G139300 Gossypium hirsutum HOM05D001439 ORTHO05D002726 6.4e-07 57.8 92 40.2
CSS0043150 Camellia sinensis var. sinensis HOM05D001439 ORTHO05D002726 8.3e-07 57.4 108 35.2
VMungo0540G1437 Vigna mungo HOM05D001439 ORTHO05D002726 8.3e-07 57.4 48 58.3
ATR0730G134 Amborella trichopoda HOM05D001439 ORTHO05D002726 1.1e-06 57.0 48 58.3
Nn1g06413 Nelumbo nucifera HOM05D001439 ORTHO05D002726 1.1e-06 57.0 48 58.3
EL10Ac9g20819 Beta vulgaris HOM05D001439 ORTHO05D002726 1.9e-06 56.2 90 36.7
AUR62036057 Chenopodium quinoa HOM05D001439 ORTHO05D002726 1.9e-06 56.2 89 37.1
Hund07869 Selenicereus undatus HOM05D001439 ORTHO05D002726 1.9e-06 56.2 90 35.6
Aqoxy4G00628 Aquilegia oxysepala HOM05D001439 ORTHO05D002726 2.4e-06 55.8 48 56.2
arahy.Tifrunner.gnm1.ann1.P48F6M Arachis hypogaea HOM05D001439 ORTHO05D002726 2.4e-06 55.8 48 56.2
Glyma.13G175200 Glycine max HOM05D001439 ORTHO05D002726 2.4e-06 55.8 48 56.2
Lalb_Chr15g0089681 Lupinus albus HOM05D001439 ORTHO05D002726 2.4e-06 55.8 48 56.2
Nn1g04237 Nelumbo nucifera HOM05D001439 ORTHO05D002726 2.4e-06 55.8 48 56.2
Actinidia11000 Actinidia chinensis HOM05D001439 ORTHO05D002726 3.2e-06 55.5 65 44.6
arahy.Tifrunner.gnm1.ann1.DG2K05 Arachis hypogaea HOM05D001439 ORTHO05D002726 3.2e-06 55.5 48 56.2
CSS0016347 Camellia sinensis var. sinensis HOM05D001439 ORTHO05D002726 3.2e-06 55.5 53 54.7
CSS0047003 Camellia sinensis var. sinensis HOM05D001439 ORTHO05D002726 3.2e-06 55.5 53 54.7
Medtr2g014490 Medicago truncatula HOM05D001439 ORTHO05D002726 3.2e-06 55.5 48 56.2
Oeu012153.2 Olea europaea HOM05D001439 ORTHO05D002726 3.2e-06 55.5 49 53.1
Rhsim02G0134900 Rhododendron simsii HOM05D001439 ORTHO05D002726 3.2e-06 55.5 48 56.2
Sed0000156 Sechium edule HOM05D001439 ORTHO05D002726 3.2e-06 55.5 48 52.1
SEGI_30380 Sequoiadendron giganteum HOM05D001439 ORTHO05D002726 3.2e-06 55.5 60 45.0
TAR627G0298 Trochodendron aralioides HOM05D001439 ORTHO05D002726 3.2e-06 55.5 48 56.2
GSVIVG01020605001 Vitis vinifera HOM05D001439 ORTHO05D002726 3.2e-06 55.5 48 56.2
Cfa014661 Carpinus fangiana HOM05D001439 ORTHO05D002726 4.1e-06 55.1 48 56.2
Ciclev10014022m.g Citrus clementina HOM05D001439 ORTHO05D002726 4.1e-06 55.1 87 37.9
Dinv06859 Davidia involucrata HOM05D001439 ORTHO05D002726 4.1e-06 55.1 48 56.2
Phvul.006G182000 Phaseolus vulgaris HOM05D001439 ORTHO05D002726 4.1e-06 55.1 48 58.3
Psat1g203000 Pisum sativum HOM05D001439 ORTHO05D002726 4.1e-06 55.1 47 57.4
PGR004G2384 Punica granatum HOM05D001439 ORTHO05D002726 4.1e-06 55.1 48 56.2
SEGI_20521 Sequoiadendron giganteum HOM05D001439 ORTHO05D007599 4.1e-06 55.1 103 37.9
Atru.chr6.2869 Acer truncatum HOM05D001439 ORTHO05D002726 5.4e-06 54.7 46 56.5
CANSAT64G0141 Cannabis sativa HOM05D001439 ORTHO05D002726 5.4e-06 54.7 48 56.2
Haze_13244 Corylus avellana HOM05D001439 ORTHO05D002726 5.4e-06 54.7 48 54.2
Lj6g0010323 Lotus japonicus HOM05D001439 ORTHO05D002726 5.4e-06 54.7 48 56.2
Nitab4.5_0005191g0050 Nicotiana tabacum HOM05D001439 ORTHO05D002726 5.4e-06 54.7 48 54.2
Os05g0562400 Oryza sativa ssp. japonica HOM05D001439 ORTHO05D002726 5.4e-06 54.7 48 54.2
PSO210G6356 Papaver somniferum HOM05D001439 ORTHO05D002726 5.4e-06 54.7 48 54.2
PSO832G3479 Papaver somniferum HOM05D001439 ORTHO05D002726 5.4e-06 54.7 48 54.2
CANSAT35G2047 Cannabis sativa HOM05D001439 ORTHO05D002726 7.1e-06 54.3 48 52.1
Cfa000527 Carpinus fangiana HOM05D001439 ORTHO05D002726 7.1e-06 54.3 48 54.2
CiPaw.09G063400 Carya illinoinensis HOM05D001439 ORTHO05D002726 7.1e-06 54.3 48 54.2
Duzib160G0499 Durio zibethinus HOM05D001439 ORTHO05D002726 7.1e-06 54.3 48 54.2
Eucgr.K01058 Eucalyptus grandis HOM05D001439 ORTHO05D002726 7.1e-06 54.3 48 54.2
Mapoly0005s0159 Marchantia polymorpha HOM05D001439 ORTHO05D002726 7.1e-06 54.3 48 56.2
Psat7g116080 Pisum sativum HOM05D001439 ORTHO05D002726 7.1e-06 54.3 48 54.2
TPR.G19912 Trifolium pratense HOM05D001439 ORTHO05D002726 7.1e-06 54.3 48 54.2
unitig_27.g24975 Utricularia gibba HOM05D001439 ORTHO05D002726 7.1e-06 54.3 46 56.5
vmacro15932 Vaccinium macrocarpon HOM05D001439 ORTHO05D002726 7.1e-06 54.3 48 56.2
Gohir.A06G211700 Gossypium hirsutum HOM05D001439 ORTHO05D002726 9.2e-06 53.9 48 54.2
Gohir.D06G209500 Gossypium hirsutum HOM05D001439 ORTHO05D002726 9.2e-06 53.9 48 54.2
Gorai.010G243500 Gossypium raimondii HOM05D001439 ORTHO05D002726 9.2e-06 53.9 48 54.2
Hma1.2p1_0558F.1_g178470 Hydrangea macrophylla HOM05D001439 ORTHO05D002726 9.2e-06 53.9 48 52.1
Lalb_Chr20g0121581 Lupinus albus HOM05D001439 ORTHO05D002726 9.2e-06 53.9 48 56.2
Manes.13G141800 Manihot esculenta HOM05D001439 ORTHO05D002726 9.2e-06 53.9 48 54.2
Peaxi162Scf00845g00120 Petunia axillaris HOM05D001439 ORTHO05D002726 9.2e-06 53.9 48 54.2
TPR.G11655 Trifolium pratense HOM05D001439 ORTHO05D002726 9.2e-06 53.9 48 52.1


User provided reference genes

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