Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 1.8e-84 315.8 158 100.0
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 6.3e-77 290.8 152 91.4
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 9.0e-76 287.0 149 93.3
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 1.5e-75 286.2 148 93.2
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 2.0e-75 285.8 148 94.6
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 3.4e-75 285.0 149 93.3
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 5.9e-75 284.3 149 91.3
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 7.7e-75 283.9 149 91.9
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 7.7e-75 283.9 151 90.1
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 1.3e-74 283.1 149 91.9
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 1.3e-74 283.1 149 91.3
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 1.3e-74 283.1 149 90.6
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 1.3e-74 283.1 149 92.6
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 1.7e-74 282.7 149 90.6
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.7e-74 282.7 149 90.6
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.7e-74 282.7 149 90.6
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.7e-74 282.7 149 90.6
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 1.7e-74 282.7 149 90.6
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 1.7e-74 282.7 149 91.9
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 2.9e-74 282.0 149 89.9
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 3.8e-74 281.6 149 91.3
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 5.0e-74 281.2 149 90.6
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 5.0e-74 281.2 149 90.6
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 5.0e-74 281.2 149 91.3
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 5.0e-74 281.2 152 87.5
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 8.5e-74 280.4 149 89.3
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 8.5e-74 280.4 149 89.3
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 1.1e-73 280.0 149 90.6
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 2.5e-73 278.9 149 90.6
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 2.5e-73 278.9 149 89.9
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 3.2e-73 278.5 148 91.9
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 3.2e-73 278.5 149 89.9
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 3.2e-73 278.5 149 91.9
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 4.2e-73 278.1 148 91.2
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 4.2e-73 278.1 149 88.6
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 4.2e-73 278.1 149 87.9
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 4.2e-73 278.1 149 88.6
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 7.2e-73 277.3 149 89.9
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 7.2e-73 277.3 150 87.3
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 7.2e-73 277.3 149 90.6
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 1.2e-72 276.6 149 88.6
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 2.1e-72 275.8 149 89.3
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 2.1e-72 275.8 149 87.2
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.1e-72 275.8 148 89.9
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.7e-72 275.4 148 89.2
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 4.6e-72 274.6 149 89.3
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 4.6e-72 274.6 149 87.9
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 4.6e-72 274.6 145 92.4
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 6.1e-72 274.2 149 85.9
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 6.1e-72 274.2 149 89.3
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 6.1e-72 274.2 149 87.9
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 1.0e-71 273.5 149 89.9
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 1.0e-71 273.5 150 87.3
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 1.0e-71 273.5 149 87.9
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 1.8e-71 272.7 149 86.6
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 1.8e-71 272.7 149 89.3
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 5.1e-71 271.2 166 81.3
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 5.1e-71 271.2 166 81.3
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 5.1e-71 271.2 143 90.9
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 6.7e-71 270.8 149 89.3
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 8.8e-71 270.4 166 80.7
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 1.5e-70 269.6 149 85.9
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 2.0e-70 269.2 147 87.8
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 2.0e-70 269.2 162 80.9
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 3.3e-70 268.5 148 86.5
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 4.3e-70 268.1 149 87.2
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 5.7e-70 267.7 149 85.2
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 7.4e-70 267.3 149 85.2
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 9.7e-70 266.9 149 85.2
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 9.7e-70 266.9 166 79.5
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 9.7e-70 266.9 149 85.9
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 1.3e-69 266.5 149 85.2
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 1.7e-69 266.2 149 85.2
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 1.7e-69 266.2 172 77.3
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 2.2e-69 265.8 149 85.2
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 4.8e-69 264.6 149 84.6
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 4.8e-69 264.6 149 84.6
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 6.3e-69 264.2 149 84.6
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 8.2e-69 263.8 149 84.6
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.8e-68 262.7 149 84.6
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 2.4e-68 262.3 149 84.6
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 3.1e-68 261.9 149 83.9
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 3.1e-68 261.9 149 86.6
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 5.3e-68 261.2 147 87.1
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 6.9e-68 260.8 148 84.5
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 9.1e-68 260.4 149 86.6
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 9.1e-68 260.4 149 85.2
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 1.2e-67 260.0 149 81.9
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 1.5e-67 259.6 149 83.9
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 2.6e-67 258.8 149 83.2
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 3.4e-67 258.5 149 82.6
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 5.9e-67 257.7 149 83.2
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 5.9e-67 257.7 149 81.9
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 2.2e-66 255.8 149 82.6
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 1.1e-65 253.4 149 79.9
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.4e-65 253.1 149 80.5
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 1.9e-65 252.7 155 78.7
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 2.5e-65 252.3 177 71.8
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.2e-65 251.9 194 68.6
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 3.2e-65 251.9 203 66.0
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 3.2e-65 251.9 138 89.1
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 5.5e-65 251.1 149 78.5
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 7.2e-65 250.8 149 80.5
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 2.7e-64 248.8 149 81.9
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 2.7e-64 248.8 148 83.1
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 2.7e-64 248.8 138 88.4
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 6.1e-64 247.7 149 81.2
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 1.8e-63 246.1 150 81.3
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 3.9e-63 245.0 135 88.9
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 5.1e-63 244.6 149 81.2
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 1.5e-62 243.0 149 74.5
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 2.0e-62 242.7 149 76.5
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 2.6e-62 242.3 155 76.1
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 1.3e-61 240.0 124 89.5
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 1.3e-61 240.0 160 78.1
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 6.3e-61 237.7 133 88.0
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 7.0e-60 234.2 149 77.9
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 9.1e-60 233.8 126 84.9
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 5.9e-59 231.1 150 74.7
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 3.2e-57 225.3 123 83.7
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 7.2e-57 224.2 150 73.3
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 1.8e-55 219.5 139 82.0
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 7.5e-54 214.2 150 75.3
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 1.1e-52 210.3 150 73.3
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 4.1e-52 208.4 134 76.9
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 7.0e-52 207.6 149 73.2
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 7.0e-52 207.6 179 58.1
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 3.8e-50 201.8 141 75.2
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 1.1e-49 200.3 149 71.1
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.5e-49 199.9 138 69.6
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 2.5e-49 199.1 104 96.2
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 5.5e-49 198.0 150 68.7
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 4.7e-48 194.9 104 94.2
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 1.0e-47 193.7 104 92.3
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 1.4e-47 193.4 104 91.3
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 1.4e-47 193.4 104 91.3
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 3.0e-47 192.2 104 90.4
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 5.2e-47 191.4 114 80.7
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 5.2e-47 191.4 106 89.6
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 2.8e-45 185.7 111 87.4
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 1.8e-44 183.0 104 87.5
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 4.5e-43 178.3 117 70.9
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 1.0e-42 177.2 90 88.9
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 2.9e-42 175.6 104 83.7
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 1.6e-40 169.9 90 92.2
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 7.0e-36 154.5 85 91.8
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 8.6e-34 147.5 118 64.4
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 9.5e-33 144.1 77 94.8
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 8.3e-29 131.0 74 90.5
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 1.2e-27 127.1 81 74.1
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 4.6e-27 125.2 85 70.6
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 1.1e-25 120.6 108 59.3
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 7.3e-25 117.9 81 70.4
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 4.0e-23 112.1 75 73.3
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.5e-22 110.2 74 71.6
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 5.8e-22 108.2 78 66.7
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.7e-19 99.4 64 75.0
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.3e-18 96.3 67 71.6
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 1.5e-17 93.6 145 37.2
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 4.3e-17 92.0 52 88.5
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 4.3e-17 92.0 52 88.5
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 6.2e-16 88.2 118 39.8
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.5e-14 83.6 44 84.1
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 1.5e-14 83.6 111 48.6
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 9.8e-14 80.9 161 36.0
FAN04G2473 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.3e-10 69.7 38 76.3


User provided reference genes

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