Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 0.0e+00 1622.4 816 100.0
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 0.0e+00 1199.1 779 80.7
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 0.0e+00 1196.8 780 79.0
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 0.0e+00 1190.6 778 79.2
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 0.0e+00 1178.7 783 78.8
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1177.9 811 76.4
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 0.0e+00 1176.8 784 77.9
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 0.0e+00 1171.0 772 77.7
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 0.0e+00 1169.5 777 77.7
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 0.0e+00 1153.7 753 78.5
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 0.0e+00 1152.1 756 78.3
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 0.0e+00 1149.0 773 76.7
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 0.0e+00 1148.7 772 76.6
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 0.0e+00 1147.5 776 77.1
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 0.0e+00 1145.2 776 76.9
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 0.0e+00 1144.4 733 80.1
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 0.0e+00 1144.4 771 76.4
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 0.0e+00 1143.3 729 79.6
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 0.0e+00 1139.0 729 79.3
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 0.0e+00 1138.3 762 76.5
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1136.3 820 73.2
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 0.0e+00 1135.6 763 76.0
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 0.0e+00 1134.4 769 77.9
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 0.0e+00 1131.7 721 79.9
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1130.9 752 77.1
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 0.0e+00 1128.2 767 76.4
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1127.5 753 76.8
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1127.5 740 78.1
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 0.0e+00 1123.6 752 76.9
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 0.0e+00 1122.8 716 79.6
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1121.3 741 77.3
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 0.0e+00 1120.5 762 76.4
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1120.1 698 80.8
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 0.0e+00 1119.0 749 76.5
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 0.0e+00 1119.0 716 79.2
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 0.0e+00 1118.2 740 77.2
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1117.8 738 77.9
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 0.0e+00 1117.1 777 75.3
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1114.8 738 77.2
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 0.0e+00 1112.8 771 74.6
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 0.0e+00 1112.1 773 75.5
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1107.0 769 74.6
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 0.0e+00 1103.6 754 75.6
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 0.0e+00 1099.7 771 73.8
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 0.0e+00 1099.7 716 78.8
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 0.0e+00 1099.0 779 73.7
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 0.0e+00 1094.0 771 73.8
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 0.0e+00 1087.8 705 79.1
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 0.0e+00 1081.6 772 73.2
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 0.0e+00 1080.9 771 74.2
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 0.0e+00 1080.9 809 70.7
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 5.6e-312 1073.5 830 68.6
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 3.9e-311 1071.2 755 73.0
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 6.7e-311 1070.5 755 73.4
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 1.9e-310 1068.9 775 71.1
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 2.5e-310 1068.5 801 70.8
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 5.5e-310 1067.4 781 70.9
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 2.7e-309 1065.1 747 74.0
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 2.7e-309 1065.1 747 74.0
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 1.1e-307 1059.7 727 74.6
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 2.0e-307 1058.9 762 71.8
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 2.8e-306 1055.0 744 73.9
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 2.8e-306 1055.0 737 74.8
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 1.1e-305 1053.1 749 73.8
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 1.8e-305 1052.4 724 75.7
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 2.0e-304 1048.9 783 70.9
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 8.5e-303 1043.5 720 74.4
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 1.5e-302 1042.7 655 81.2
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 2.5e-302 1042.0 742 72.4
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 7.2e-302 1040.4 745 73.6
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 9.4e-302 1040.0 750 71.1
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 1.6e-301 1039.3 774 70.2
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 2.3e-300 1035.4 753 70.4
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 1.5e-299 1032.7 736 73.1
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 4.4e-299 1031.2 690 77.5
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 5.7e-299 1030.8 795 68.3
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 7.0e-297 1023.8 770 69.1
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 1.2e-296 1023.1 716 74.9
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 2.7e-296 1021.9 776 68.9
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 2.7e-296 1021.9 776 68.9
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 3.5e-296 1021.5 770 69.6
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 4.5e-296 1021.1 776 68.8
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 5.9e-296 1020.8 770 69.5
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 2.9e-295 1018.5 782 68.8
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 5.0e-295 1017.7 775 68.8
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 6.5e-295 1017.3 740 71.2
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 8.5e-295 1016.9 766 70.1
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 1.5e-294 1016.1 725 72.0
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 1.9e-294 1015.8 766 69.1
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 2.7e-293 1011.9 771 68.7
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 6.1e-293 1010.7 772 69.0
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 2.0e-291 1005.7 723 71.8
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 2.8e-290 1001.9 771 68.4
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 9.2e-289 996.9 690 74.1
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 1.0e-287 993.4 764 70.3
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 9.2e-281 970.3 729 70.5
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 7.3e-246 854.4 622 74.1
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 2.4e-244 849.4 555 75.0
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 3.4e-243 845.5 555 74.8
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 4.5e-235 818.5 719 59.4
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 5.8e-235 818.1 750 57.9
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 2.8e-229 799.3 719 58.3
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 1.7e-226 790.0 716 58.0
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 6.0e-224 781.6 755 56.7
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.4e-220 770.4 534 67.0
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 1.9e-214 750.0 529 67.1
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 2.5e-209 733.0 579 62.5
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 1.5e-198 697.2 521 64.3
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.5e-190 670.6 414 79.0
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 2.1e-176 623.6 402 81.1
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 1.4e-172 610.9 397 77.8
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 2.3e-167 593.6 414 68.6
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 4.0e-143 513.1 270 99.6
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 2.2e-125 454.1 263 81.7
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 2.4e-103 380.9 682 36.4
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 3.6e-99 367.1 491 42.2
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.1e-95 355.5 263 65.8
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 5.3e-95 353.2 295 64.7
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 6.7e-90 336.3 631 39.8
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 7.5e-73 279.6 351 48.7
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 2.5e-68 264.6 591 32.1
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 1.5e-41 175.6 99 81.8
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 8.6e-37 159.8 83 86.7
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 2.1e-30 138.7 100 69.0
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 2.1e-30 138.7 130 57.7
MD14G1106100 Malus domestica HOM05D005554 ORTHO05D026402 1.1e-23 116.3 131 52.7
HPP92_008492 Vanilla planifolia HOM05D005554 ORTHO05D026402 2.7e-22 111.7 128 53.1
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 8.7e-21 106.7 54 87.0
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 1.4e-15 89.4 120 43.3
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 7.8e-14 83.6 54 72.2
Actinidia02001 Actinidia chinensis HOM05D005554 ORTHO05D026402 7.3e-12 77.0 85 50.6
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 7.3e-12 77.0 74 56.8
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 6.2e-11 73.9 41 82.9
Pp3c5_9920 Physcomitrium patens HOM05D005554 ORTHO05D007823 1.3e-08 66.2 80 50.0
MBI06_g27478_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 1.1e-07 63.2 398 24.1
Actinidia37487 Actinidia chinensis HOM05D005554 ORTHO05D058019 3.5e-06 58.2 70 52.9


User provided reference genes

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