Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C167G11 Lonicera japonica HOM05D005474 ORTHO05D006551 4.0e-248 860.9 418 100.0
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 5.2e-195 684.5 422 78.4
Actinidia22160 Actinidia chinensis HOM05D005474 ORTHO05D006551 2.6e-194 682.2 422 78.4
CSS0001924 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 5.7e-194 681.0 429 77.9
Rhsim02G0243400 Rhododendron simsii HOM05D005474 ORTHO05D006551 6.1e-188 661.0 421 75.3
vmacro11424 Vaccinium macrocarpon HOM05D005474 ORTHO05D006551 3.7e-185 651.7 449 71.9
GSVIVG01019532001 Vitis vinifera HOM05D005474 ORTHO05D006551 1.0e-182 643.7 417 75.3
Cc08_g16070 Coffea canephora HOM05D005474 ORTHO05D006551 1.0e-174 617.1 416 71.6
TAR629G2557 Trochodendron aralioides HOM05D005474 ORTHO05D006551 5.5e-173 611.3 422 70.1
Haze_09055 Corylus avellana HOM05D005474 ORTHO05D006551 8.8e-171 604.0 423 71.4
Prupe.5G120100 Prunus persica HOM05D005474 ORTHO05D006551 2.6e-170 602.4 419 72.6
Cfa012014 Carpinus fangiana HOM05D005474 ORTHO05D006551 8.3e-169 597.4 422 71.1
QL02p030435 Quercus lobata HOM05D005474 ORTHO05D006551 2.4e-168 595.9 418 69.1
MD14G1128900 Malus domestica HOM05D005474 ORTHO05D006551 5.4e-168 594.7 419 71.4
Aqoxy7G00102 Aquilegia oxysepala HOM05D005474 ORTHO05D006551 2.0e-167 592.8 422 68.2
MD06G1107100 Malus domestica HOM05D005474 ORTHO05D006551 4.5e-167 591.7 420 71.0
TAR374G0037 Trochodendron aralioides HOM05D005474 ORTHO05D006551 1.3e-166 590.1 422 70.1
CANSAT21G1635 Cannabis sativa HOM05D005474 ORTHO05D006551 7.3e-165 584.3 425 67.3
PSO170G1345 Papaver somniferum HOM05D005474 ORTHO05D006551 6.8e-163 577.8 428 68.2
Atru.chr9.1979 Acer truncatum HOM05D005474 ORTHO05D006551 1.7e-161 573.2 423 66.4
Atru.chr9.1994 Acer truncatum HOM05D005474 ORTHO05D006551 2.9e-161 572.4 423 66.4
PGR042G2806 Punica granatum HOM05D005474 ORTHO05D006551 7.0e-160 567.8 424 65.3
Ciclev10020308m.g Citrus clementina HOM05D005474 ORTHO05D006551 1.6e-159 566.6 414 65.7
Manes.01G049100 Manihot esculenta HOM05D005474 ORTHO05D006551 2.0e-159 566.2 429 67.1
Eucgr.D01738 Eucalyptus grandis HOM05D005474 ORTHO05D006551 2.7e-159 565.8 425 65.6
MELO3C005754.2 Cucumis melo HOM05D005474 ORTHO05D006551 3.5e-159 565.5 423 66.4
Potri.003G140000 Populus trichocarpa HOM05D005474 ORTHO05D006551 3.5e-159 565.5 422 66.6
CsaV3_5G001990 Cucumis sativus L. HOM05D005474 ORTHO05D006551 5.9e-159 564.7 420 66.7
RcHm_v2.0_Chr7g0194791 Rosa chinensis HOM05D005474 ORTHO05D006551 1.0e-158 563.9 408 68.1
CAN.G532.121 Capsicum annuum HOM05D005474 ORTHO05D006551 1.7e-158 563.1 416 65.4
Lalb_Chr05g0211531 Lupinus albus HOM05D005474 ORTHO05D006551 1.7e-158 563.1 416 65.4
Nitab4.5_0002782g0080 Nicotiana tabacum HOM05D005474 ORTHO05D006551 3.0e-158 562.4 417 65.9
Solyc08g082320.3 Solanum lycopersicum HOM05D005474 ORTHO05D006551 8.6e-158 560.8 418 65.1
Oeu063522.1 Olea europaea HOM05D005474 ORTHO05D006551 1.1e-157 560.5 421 65.8
Sopen08g030580 Solanum pennellii HOM05D005474 ORTHO05D006551 1.5e-157 560.1 418 64.8
PGSC0003DMG400012286 Solanum tuberosum HOM05D005474 ORTHO05D006551 2.5e-157 559.3 418 65.1
FAN08G2748 Fragaria x ananassa HOM05D005474 ORTHO05D006551 7.3e-157 557.8 421 66.0
FvH4_5g04600 Fragaria vesca HOM05D005474 ORTHO05D006551 1.6e-156 556.6 421 65.8
FAN18G3330 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.6e-156 556.6 417 65.7
FAN18G1504 Fragaria x ananassa HOM05D005474 ORTHO05D006551 2.1e-156 556.2 417 65.7
Sed0020716 Sechium edule HOM05D005474 ORTHO05D006551 4.7e-156 555.1 423 64.5
TWI12G0204 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 8.0e-156 554.3 428 64.3
FAN04G1263 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.0e-155 553.9 421 65.8
Glyma.01G225700 Glycine max HOM05D005474 ORTHO05D006551 5.2e-155 551.6 423 63.6
TWI56G1439 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 1.5e-154 550.1 427 62.3
ClCG01G001840 Citrullus lanatus HOM05D005474 ORTHO05D006551 2.0e-154 549.7 421 65.6
Duzib084G1138 Durio zibethinus HOM05D005474 ORTHO05D006551 2.0e-154 549.7 422 63.0
Psat2g185600 Pisum sativum HOM05D005474 ORTHO05D006551 2.6e-154 549.3 423 62.2
VMungo1215G0769 Vigna mungo HOM05D005474 ORTHO05D006551 2.6e-154 549.3 427 63.7
Sed0014344 Sechium edule HOM05D005474 ORTHO05D006551 4.4e-154 548.5 419 64.2
Ca_24501_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 9.8e-154 547.4 424 62.0
Ca_29734_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 9.8e-154 547.4 424 62.0
FAN13G0565 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.3e-153 547.0 416 65.1
TPR.G25600 Trifolium pratense HOM05D005474 ORTHO05D006551 1.3e-153 547.0 424 62.3
Lsat_1_v5_gn_6_83981 Lactuca sativa HOM05D005474 ORTHO05D006551 1.7e-153 546.6 424 64.6
ECA240G1977 Erigeron canadensis HOM05D005474 ORTHO05D006551 2.2e-153 546.2 424 65.6
Thecc.03G298100 Theobroma cacao HOM05D005474 ORTHO05D006551 2.2e-153 546.2 422 63.3
COL.COLO4_10702 Corchorus olitorius HOM05D005474 ORTHO05D006551 8.3e-153 544.3 424 62.0
Potri.001G091600 Populus trichocarpa HOM05D005474 ORTHO05D006551 1.9e-152 543.1 429 63.9
Medtr5g009240 Medicago truncatula HOM05D005474 ORTHO05D006551 2.4e-152 542.7 412 62.9
CiPaw.11G121500 Carya illinoinensis HOM05D005474 ORTHO05D006551 5.4e-152 541.6 393 67.7
Migut.E01253 Erythranthe guttata HOM05D005474 ORTHO05D006551 7.0e-152 541.2 422 64.9
Lalb_Chr16g0376951 Lupinus albus HOM05D005474 ORTHO05D006551 1.6e-151 540.0 417 63.8
Phvul.002G164600 Phaseolus vulgaris HOM05D005474 ORTHO05D006551 1.6e-151 540.0 424 62.0
SalBow8G3265 Salvia bowleyana HOM05D005474 ORTHO05D006551 1.0e-150 537.3 421 64.1
arahy.Tifrunner.gnm1.ann1.Z0ACGZ Arachis hypogaea HOM05D005474 ORTHO05D006551 1.3e-150 537.0 495 54.9
Gohir.D12G237600 Gossypium hirsutum HOM05D005474 ORTHO05D006551 2.3e-150 536.2 421 62.7
Gohir.A12G236400 Gossypium hirsutum HOM05D005474 ORTHO05D006551 6.6e-150 534.6 422 62.8
PSO063G4762 Papaver somniferum HOM05D005474 ORTHO05D006551 6.6e-150 534.6 401 67.3
MSTRG.13885 Avicennia marina HOM05D005474 ORTHO05D006551 8.6e-150 534.3 471 57.7
Sabra01G0068000 Salix brachista HOM05D005474 ORTHO05D006551 1.9e-149 533.1 431 63.6
Gorai.008G254400 Gossypium raimondii HOM05D005474 ORTHO05D006551 3.3e-149 532.3 421 62.5
SalBow1G8106 Salvia bowleyana HOM05D005474 ORTHO05D006551 9.5e-149 530.8 416 61.3
HanXRQChr03g0083521 Helianthus annuus HOM05D005474 ORTHO05D006551 2.1e-148 529.6 391 66.0
SalBow1G1678 Salvia bowleyana HOM05D005474 ORTHO05D006551 1.4e-147 526.9 416 60.8
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 2.3e-147 526.2 417 63.1
arahy.Tifrunner.gnm1.ann1.1UFI8K Arachis hypogaea HOM05D005474 ORTHO05D006551 4.4e-146 521.9 523 52.0
Cpa.g.sc128.67 Carica papaya HOM05D005474 ORTHO05D006551 9.8e-146 520.8 415 63.1
Peaxi162Scf00074g00931 Petunia axillaris HOM05D005474 ORTHO05D006551 1.3e-145 520.4 389 65.0
Hund14220 Selenicereus undatus HOM05D005474 ORTHO05D006551 3.7e-145 518.8 428 58.6
ATR0602G179 Amborella trichopoda HOM05D005474 ORTHO05D006551 1.4e-144 516.9 469 58.8
CiPaw.12G083000 Carya illinoinensis HOM05D005474 ORTHO05D006551 1.4e-144 516.9 418 61.7
Glyma.11G017200 Glycine max HOM05D005474 ORTHO05D006551 1.6e-143 513.5 393 63.1
HPP92_026770 Vanilla planifolia HOM05D005474 ORTHO05D006551 4.6e-143 511.9 425 58.6
Sabra03G0101000 Salix brachista HOM05D005474 ORTHO05D006551 6.0e-143 511.5 525 52.8
LjContig00312_ERROPOS870357g0016174 Lotus japonicus HOM05D005474 ORTHO05D006551 1.0e-142 510.8 419 58.9
Os06g0529800 Oryza sativa ssp. japonica HOM05D005474 ORTHO05D006551 7.3e-141 504.6 416 57.9
Sc22g0005000 Simmondsia chinensis HOM05D005474 ORTHO05D006551 3.6e-140 502.3 405 60.2
Zm00001eb277940 Zea mays HOM05D005474 ORTHO05D006551 3.6e-140 502.3 417 57.6
AUR62019839 Chenopodium quinoa HOM05D005474 ORTHO05D006551 7.6e-138 494.6 420 57.1
Oeu034333.1 Olea europaea HOM05D005474 ORTHO05D006551 7.6e-138 494.6 368 66.3
unitig_0.g387 Utricularia gibba HOM05D005474 ORTHO05D006551 4.9e-137 491.9 423 59.3
AUR62010840 Chenopodium quinoa HOM05D005474 ORTHO05D006551 6.4e-137 491.5 419 56.6
Sp7g21810 Schrenkiella parvula HOM05D005474 ORTHO05D006551 9.6e-133 477.6 419 56.1
CARHR231240 Cardamine hirsuta HOM05D005474 ORTHO05D006551 2.8e-132 476.1 423 56.0
Hma1.2p1_1746F.1_g300392 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 6.2e-132 474.9 342 70.5
Hma1.2p1_1746F.1_g300400 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 6.2e-132 474.9 342 70.5
THA.LOC104806435 Tarenaya hassleriana HOM05D005474 ORTHO05D006551 1.8e-131 473.4 425 56.0
Aa31LG6G7070 Aethionema arabicum HOM05D005474 ORTHO05D006551 3.4e-130 469.2 418 54.8
Thhalv10025382m.g Eutrema salsugineum HOM05D005474 ORTHO05D006551 3.8e-129 465.7 419 55.1
BcaNung01092 Brassica carinata HOM05D005474 ORTHO05D006551 4.9e-129 465.3 418 55.0
EL10Ac5g12915 Beta vulgaris HOM05D005474 ORTHO05D006551 4.2e-128 462.2 453 51.9
AL7G29500 Arabidopsis lyrata HOM05D005474 ORTHO05D006551 4.6e-127 458.8 451 51.4
Carub.0007s1727 Capsella rubella HOM05D005474 ORTHO05D006551 1.7e-126 456.8 426 53.5
AT4G23860 Arabidopsis thaliana HOM05D005474 ORTHO05D006551 9.0e-123 444.5 456 49.8
A01p15160 Brassica napus HOM05D005474 ORTHO05D006551 2.0e-122 443.4 418 51.4
BolC1t01832H Brassica oleracea HOM05D005474 ORTHO05D006551 2.0e-122 443.4 421 51.8
BcaC09g50941 Brassica carinata HOM05D005474 ORTHO05D006551 4.5e-122 442.2 421 51.8
C01p19060 Brassica napus HOM05D005474 ORTHO05D006551 4.5e-122 442.2 421 51.8
BraA01t01454Z Brassica rapa HOM05D005474 ORTHO05D006551 1.7e-121 440.3 418 52.2
MBI06_g08456_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 4.2e-112 409.1 425 52.7
Mapoly0095s0049 Marchantia polymorpha HOM05D005474 ORTHO05D006551 1.1e-109 401.0 431 47.1
Nn3g19016 Nelumbo nucifera HOM05D005474 ORTHO05D006551 1.1e-107 394.4 421 52.3
Pp3c7_4800 Physcomitrium patens HOM05D005474 ORTHO05D006551 6.5e-105 385.2 440 47.0
SMO200G0193 Selaginella moellendorffii HOM05D005474 ORTHO05D006551 3.9e-102 375.9 420 46.7
PGSC0003DMG401028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 1.6e-100 370.5 285 63.2
Pp3c18_8230 Physcomitrium patens HOM05D005474 ORTHO05D006551 1.4e-99 367.5 421 44.9
CDE02G2859 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 2.4e-99 366.7 268 66.0
DCAR_027700 Daucus carota HOM05D005474 ORTHO05D006551 6.3e-92 342.0 416 46.4
CSS0018913 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 4.1e-91 339.3 170 89.4
SEGI_30990 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 5.7e-85 318.9 425 40.5
CSS0034140 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 3.9e-78 296.2 141 90.8
TAR636G0569 Trochodendron aralioides HOM05D005474 ORTHO05D006551 1.1e-75 288.1 174 74.1
CSS0004779 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 2.5e-72 276.9 144 87.5
CBR_g50475 Chara braunii HOM05D005474 ORTHO05D006551 2.5e-72 276.9 541 33.1
PSO017G5523 Papaver somniferum HOM05D005474 ORTHO05D006551 8.6e-57 225.3 121 79.3
CSS0021446 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 2.9e-49 200.3 91 92.3
PGSC0003DMG400011405 Solanum tuberosum HOM05D005474 ORTHO05D006551 5.6e-48 196.1 190 51.6
unitig_0.g2293 Utricularia gibba HOM05D005474 ORTHO05D006551 4.9e-36 156.4 230 43.0
Duzib084G0281 Durio zibethinus HOM05D005474 ORTHO05D006551 5.8e-29 132.9 81 72.8
Hma1.2p1_1746F.1_g300390 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 9.9e-29 132.1 73 86.3
Hma1.2p1_1746F.1_g300398 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 9.9e-29 132.1 73 86.3
SEGI_08425 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 6.0e-26 122.9 66 81.8
SHI06991 Sapria himalayana HOM05D005474 ORTHO05D006551 1.6e-23 114.8 59 83.1
CDE08G0829 Ceratophyllum demersum HOM05D005474 ORTHO05D006551 6.2e-23 112.8 66 80.3
Ah.07g197430 Amaranthus hybridus HOM05D005474 ORTHO05D006551 7.6e-21 105.9 84 57.1
Cfa025394 Carpinus fangiana HOM05D005474 ORTHO05D122676 1.5e-16 91.7 192 33.3
PGSC0003DMG402028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 8.1e-15 85.9 74 59.5
Nitab4.5_0000829g0030 Nicotiana tabacum HOM05D005474 ORTHO05D006551 9.0e-14 82.4 75 56.0
MBI18_g28764_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 1.5e-13 81.6 76 57.9


User provided reference genes

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