Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C1188T5 Lonicera japonica HOM05D000161 ORTHO05D009031 0.0e+00 1584.7 772 100.0
Dinv33015 Davidia involucrata HOM05D000161 ORTHO05D009031 0.0e+00 1309.3 762 83.1
GSVIVG01010978001 Vitis vinifera HOM05D000161 ORTHO05D009031 0.0e+00 1276.5 759 80.8
Actinidia00683 Actinidia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1276.2 770 79.4
MD03G1280600 Malus domestica HOM05D000161 ORTHO05D009031 0.0e+00 1269.2 763 79.2
Cfa005996 Carpinus fangiana HOM05D000161 ORTHO05D009031 0.0e+00 1265.8 771 78.5
TWI59G0096 Tripterygium wilfordii HOM05D000161 ORTHO05D009031 0.0e+00 1264.2 770 78.8
Prupe.8G255100 Prunus persica HOM05D000161 ORTHO05D009031 0.0e+00 1263.1 762 79.9
PGSC0003DMG400011361 Solanum tuberosum HOM05D000161 ORTHO05D009031 0.0e+00 1263.1 765 78.7
COL.COLO4_08004 Corchorus olitorius HOM05D000161 ORTHO05D009031 0.0e+00 1260.0 757 79.1
vmacro02493 Vaccinium macrocarpon HOM05D000161 ORTHO05D009031 0.0e+00 1258.0 785 77.7
Manes.05G066300 Manihot esculenta HOM05D000161 ORTHO05D009031 0.0e+00 1256.5 770 77.9
Gohir.A11G116600 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1255.7 771 78.1
Gohir.D11G121700 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1255.0 771 78.0
Cc01_g20450 Coffea canephora HOM05D000161 ORTHO05D009031 0.0e+00 1254.6 769 77.5
TAR362G0905 Trochodendron aralioides HOM05D000161 ORTHO05D009031 0.0e+00 1253.8 757 79.9
CiPaw.07G102700 Carya illinoinensis HOM05D000161 ORTHO05D009031 0.0e+00 1251.9 757 78.9
Solyc09g074660.3 Solanum lycopersicum HOM05D000161 ORTHO05D009031 0.0e+00 1247.6 769 77.4
Gorai.007G130400 Gossypium raimondii HOM05D000161 ORTHO05D009031 0.0e+00 1247.3 771 77.6
Sopen09g029540 Solanum pennellii HOM05D000161 ORTHO05D009031 0.0e+00 1245.7 769 77.4
Haze_04852 Corylus avellana HOM05D000161 ORTHO05D009031 0.0e+00 1242.6 781 77.2
CAN.G1777.2 Capsicum annuum HOM05D000161 ORTHO05D009031 0.0e+00 1242.3 769 78.2
Oeu057577.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1239.9 769 77.4
Ciclev10018836m.g Citrus clementina HOM05D000161 ORTHO05D009031 0.0e+00 1239.6 760 78.8
CANSAT25G3411 Cannabis sativa HOM05D000161 ORTHO05D009031 0.0e+00 1238.8 750 78.4
Eucgr.K03449 Eucalyptus grandis HOM05D000161 ORTHO05D009031 0.0e+00 1238.4 771 76.7
Duzib138G1706 Durio zibethinus HOM05D000161 ORTHO05D009031 0.0e+00 1237.2 782 76.5
Potri.002G209900 Populus trichocarpa HOM05D000161 ORTHO05D009031 0.0e+00 1236.1 757 77.8
CsaV3_7G028900 Cucumis sativus L. HOM05D000161 ORTHO05D009031 0.0e+00 1231.1 761 76.7
Atru.chr5.1245 Acer truncatum HOM05D000161 ORTHO05D009031 0.0e+00 1229.9 759 78.0
Thecc.01G293400 Theobroma cacao HOM05D000161 ORTHO05D009031 0.0e+00 1229.5 758 77.6
RcHm_v2.0_Chr6g0293001 Rosa chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1228.4 755 77.6
Sed0007225 Sechium edule HOM05D000161 ORTHO05D009031 0.0e+00 1228.4 754 78.0
Nitab4.5_0001102g0080 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1225.7 764 77.2
Ca_09126_v3 Cicer arietinum L. HOM05D000161 ORTHO05D009031 0.0e+00 1222.2 764 77.0
ClCG09G006240 Citrullus lanatus HOM05D000161 ORTHO05D009031 0.0e+00 1219.9 761 77.0
Nitab4.5_0005245g0010 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1218.8 752 77.7
Medtr7g108310 Medicago truncatula HOM05D000161 ORTHO05D009031 0.0e+00 1218.0 756 76.5
FvH4_2g25030 Fragaria vesca HOM05D000161 ORTHO05D009031 0.0e+00 1217.6 754 76.8
TPR.G9287 Trifolium pratense HOM05D000161 ORTHO05D009031 0.0e+00 1217.6 764 76.4
SGA_v2.0_scaffold1G00398 Striga asiatica HOM05D000161 ORTHO05D009031 0.0e+00 1214.5 762 76.5
Phvul.001G204000 Phaseolus vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1213.7 753 76.9
Sabra02G0150400 Salix brachista HOM05D000161 ORTHO05D009031 0.0e+00 1213.4 768 76.4
Sc24g0003880 Simmondsia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1212.2 765 75.6
Glyma.03G210900 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1211.4 763 75.6
MSTRG.18182 Avicennia marina HOM05D000161 ORTHO05D009031 0.0e+00 1209.1 761 75.8
VMungo1383G3032 Vigna mungo HOM05D000161 ORTHO05D009031 0.0e+00 1207.2 753 76.4
Aqoxy2G03055 Aquilegia oxysepala HOM05D000161 ORTHO05D009031 0.0e+00 1206.4 765 75.3
PGR044G2096 Punica granatum HOM05D000161 ORTHO05D009031 0.0e+00 1206.4 758 75.3
HanXRQChr11g0350111 Helianthus annuus HOM05D000161 ORTHO05D009031 0.0e+00 1204.9 767 75.1
Lj1g0007269 Lotus japonicus HOM05D000161 ORTHO05D009031 0.0e+00 1204.5 758 75.5
ECA236G0218 Erigeron canadensis HOM05D000161 ORTHO05D009031 0.0e+00 1200.7 779 74.1
Lalb_Chr18g0047291 Lupinus albus HOM05D000161 ORTHO05D009031 0.0e+00 1199.5 757 76.1
Nn3g21368 Nelumbo nucifera HOM05D000161 ORTHO05D009031 0.0e+00 1199.5 753 75.3
Migut.D00162 Erythranthe guttata HOM05D000161 ORTHO05D009031 0.0e+00 1198.7 753 75.8
FAN24G1124 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1193.7 755 75.9
Psat3g023920 Pisum sativum HOM05D000161 ORTHO05D009031 0.0e+00 1192.9 763 75.1
PSO170G2241 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1189.9 755 75.1
Glyma.19G208100 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1188.7 757 75.0
EL10Ac7g17434 Beta vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1186.8 768 74.0
FAN27G3195 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1183.7 767 75.1
PSO210G6500 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1176.8 785 72.5
SalBow3G3810 Salvia bowleyana HOM05D000161 ORTHO05D009031 0.0e+00 1175.6 756 74.6
Sp6g03230 Schrenkiella parvula HOM05D000161 ORTHO05D009031 0.0e+00 1173.7 761 73.5
Oeu034814.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1173.3 788 73.6
Rhsim13G0015500 Rhododendron simsii HOM05D000161 ORTHO05D009031 0.0e+00 1172.5 801 71.8
C09p02590 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1170.2 761 74.0
Carub.0006s3386 Capsella rubella HOM05D000161 ORTHO05D009031 0.0e+00 1170.2 761 73.3
BcaB01g01973 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1169.5 762 73.4
Lsat_1_v5_gn_8_54360 Lactuca sativa HOM05D000161 ORTHO05D009031 0.0e+00 1168.3 784 72.6
BraA09t35896Z Brassica rapa HOM05D000161 ORTHO05D009031 0.0e+00 1166.8 761 73.7
BolC9t53189H Brassica oleracea HOM05D000161 ORTHO05D009031 0.0e+00 1163.3 761 73.6
BcaC04g23994 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1162.9 762 73.9
AL6G49740 Arabidopsis lyrata HOM05D000161 ORTHO05D009031 0.0e+00 1162.1 761 72.9
A09p02490 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1161.4 762 73.6
Thhalv10028434m.g Eutrema salsugineum HOM05D000161 ORTHO05D009031 0.0e+00 1159.8 761 73.3
CARHR251630 Cardamine hirsuta HOM05D000161 ORTHO05D009031 0.0e+00 1154.8 761 72.7
Lj1A36T49 Lonicera japonica HOM05D000161 ORTHO05D009031 0.0e+00 1146.3 762 74.9
QL12p024497 Quercus lobata HOM05D000161 ORTHO05D009031 0.0e+00 1136.3 690 78.4
Peaxi162Scf00067g01926 Petunia axillaris HOM05D000161 ORTHO05D009031 0.0e+00 1129.8 695 77.6
unitig_747.g21791 Utricularia gibba HOM05D000161 ORTHO05D009031 0.0e+00 1125.2 812 67.9
MELO3C016048.2 Cucumis melo HOM05D000161 ORTHO05D009031 0.0e+00 1119.0 686 77.8
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 0.0e+00 1118.2 740 72.7
ATR0706G016 Amborella trichopoda HOM05D000161 ORTHO05D009031 0.0e+00 1111.3 762 69.8
MBI19_g24003_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D009031 0.0e+00 1106.7 755 72.1
arahy.Tifrunner.gnm1.ann1.4BF7AZ Arachis hypogaea HOM05D000161 ORTHO05D009031 0.0e+00 1103.6 703 75.5
DCAR_018348 Daucus carota HOM05D000161 ORTHO05D009031 0.0e+00 1099.7 742 72.2
Ah.08g212400 Amaranthus hybridus HOM05D000161 ORTHO05D009031 0.0e+00 1088.9 808 66.7
Cpa.g.sc441.2 Carica papaya HOM05D000161 ORTHO05D009031 0.0e+00 1082.8 663 78.0
AUR62034669 Chenopodium quinoa HOM05D000161 ORTHO05D009031 6.8e-310 1067.0 847 63.6
AT4G03200 Arabidopsis thaliana HOM05D000161 ORTHO05D009031 5.4e-307 1057.4 685 73.6
CSS0042056 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D009031 9.2e-299 1030.0 625 79.0
Mapoly0086s0039 Marchantia polymorpha HOM05D000161 ORTHO05D009031 3.3e-280 968.4 751 60.9
Pp3c3_16890 Physcomitrium patens HOM05D000161 ORTHO05D009031 1.3e-279 966.5 758 61.6
AagrBONN_evm.TU.Sc2ySwM_362.238 Anthoceros agrestis HOM05D000161 ORTHO05D009031 8.7e-273 943.7 756 59.8
arahy.Tifrunner.gnm1.ann1.Z5FZN7 Arachis hypogaea HOM05D000161 ORTHO05D009031 9.6e-264 913.7 607 73.1
Zm00001eb141990 Zea mays HOM05D000161 ORTHO05D009031 4.5e-261 904.8 635 67.7
AUR62008570 Chenopodium quinoa HOM05D000161 ORTHO05D009031 2.4e-246 855.9 691 63.0
HPP92_011821 Vanilla planifolia HOM05D000161 ORTHO05D009031 3.1e-246 855.5 625 65.1
CBR_g39419 Chara braunii HOM05D000019 ORTHO05D000048 5.2e-225 785.0 679 56.3
CDE09G1084 Ceratophyllum demersum HOM05D000161 ORTHO05D009031 8.8e-217 757.7 523 70.6
Cre07.g331250 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D009031 7.6e-168 595.1 801 42.6
Lj1A204T33 Lonicera japonica HOM05D000161 ORTHO05D009031 3.2e-166 589.7 599 55.6
SMO011G0044 Selaginella moellendorffii HOM05D000161 ORTHO05D009031 1.7e-143 514.2 364 65.7
SEGI_38220 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 2.0e-120 437.6 306 69.0
Os01g0935600 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D009031 2.5e-94 350.9 264 62.9
arahy.Tifrunner.gnm1.ann1.S4ZP24 Arachis hypogaea HOM05D000161 ORTHO05D009031 1.0e-84 318.9 286 60.1
arahy.Tifrunner.gnm1.ann1.FVA5UA Arachis hypogaea HOM05D000161 ORTHO05D009031 1.7e-74 285.0 223 64.1
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 2.5e-70 271.2 251 57.8
EL10Ac6g14352 Beta vulgaris HOM05D000161 ORTHO05D009031 9.9e-59 232.6 150 72.7
EL10Ac7g17602 Beta vulgaris HOM05D000161 ORTHO05D039009 8.7e-47 193.0 122 73.8
arahy.Tifrunner.gnm1.ann1.NYYR6I Arachis hypogaea HOM05D000161 ORTHO05D038839 2.8e-45 188.0 140 63.6
SEGI_26615 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 3.8e-42 177.6 128 64.8
HPP92_011833 Vanilla planifolia HOM05D000161 ORTHO05D036718 3.4e-35 154.5 101 69.3
Lsat_1_v5_gn_2_56220 Lactuca sativa HOM05D000161 ORTHO05D229717 2.4e-28 131.7 101 61.4
SEGI_06948 Sequoiadendron giganteum HOM05D000161 ORTHO05D038839 8.5e-26 123.2 109 50.5
arahy.Tifrunner.gnm1.ann1.A1CTBX Arachis hypogaea HOM05D000161 ORTHO05D083724 5.5e-25 120.6 157 45.2
Lj1A206G50 Lonicera japonica HOM05D000161 ORTHO05D235408 5.1e-23 114.0 110 57.3
EL10Ac9g20878 Beta vulgaris HOM05D008595 ORTHO05D010945 2.9e-18 98.2 62 74.2
SEGI_02592 Sequoiadendron giganteum HOM05D000161 ORTHO05D039009 7.9e-16 90.1 56 76.8
Medtr3g438040 Medicago truncatula HOM05D000161 ORTHO05D036718 1.8e-12 79.0 42 83.3
arahy.Tifrunner.gnm1.ann1.0H5KQ4 Arachis hypogaea HOM05D000161 ORTHO05D009031 1.0e-10 73.2 43 69.8
A03p30570 Brassica napus HOM05D000161 ORTHO05D041164 4.2e-09 67.8 41 78.0
BraA03t12237Z Brassica rapa HOM05D000161 ORTHO05D041164 1.0e-07 63.2 38 76.3
Medtr5g010890 Medicago truncatula HOM05D000161 ORTHO05D036718 7.4e-06 57.0 43 67.4


User provided reference genes

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