Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C1174G3 Lonicera japonica HOM05D007546 ORTHO05D009542 1.4e-204 716.1 356 100.0
Dinv34747 Davidia involucrata HOM05D007546 ORTHO05D009542 1.0e-103 380.9 257 74.3
CSS0011141 Camellia sinensis var. sinensis HOM05D007546 ORTHO05D009542 1.3e-98 364.0 257 72.8
Actinidia24887 Actinidia chinensis HOM05D007546 ORTHO05D009542 4.4e-94 349.0 257 68.5
vmacro14926 Vaccinium macrocarpon HOM05D007546 ORTHO05D009542 2.4e-92 343.2 292 62.0
DCAR_018417 Daucus carota HOM05D007546 ORTHO05D009542 5.0e-90 335.5 257 63.8
Hma1.2p1_0257F.1_g103530 Hydrangea macrophylla HOM05D007546 ORTHO05D009542 4.4e-86 322.4 253 65.2
Lsat_1_v5_gn_9_3860 Lactuca sativa HOM05D007546 ORTHO05D009542 1.7e-85 320.5 257 63.0
TWI14G0110 Tripterygium wilfordii HOM05D007546 ORTHO05D009542 4.8e-85 318.9 259 62.9
GSVIVG01011126001 Vitis vinifera HOM05D007546 ORTHO05D009542 7.0e-84 315.1 259 64.5
QL12p022024 Quercus lobata HOM05D007546 ORTHO05D009542 3.5e-83 312.8 248 64.5
Duzib138G1282 Durio zibethinus HOM05D007546 ORTHO05D009542 4.5e-83 312.4 258 62.4
COL.COLO4_09104 Corchorus olitorius HOM05D007546 ORTHO05D009542 1.5e-81 307.4 255 63.5
HanXRQChr10g0282741 Helianthus annuus HOM05D007546 ORTHO05D009542 1.9e-81 307.0 258 60.9
Hma1.2p1_0257F.1_g103520 Hydrangea macrophylla HOM05D007546 ORTHO05D009542 1.9e-81 307.0 227 68.3
Ciclev10023872m.g Citrus clementina HOM05D007546 ORTHO05D009542 3.2e-81 306.2 256 62.5
Atru.chr5.1426 Acer truncatum HOM05D007546 ORTHO05D009542 4.7e-80 302.4 259 62.2
Gohir.D08G076500 Gossypium hirsutum HOM05D007546 ORTHO05D009542 6.1e-80 302.0 259 61.4
Gorai.004G081100 Gossypium raimondii HOM05D007546 ORTHO05D009542 6.1e-80 302.0 259 61.4
Haze_04718 Corylus avellana HOM05D007546 ORTHO05D009542 1.5e-78 297.4 260 61.9
Cc01_g19550 Coffea canephora HOM05D007546 ORTHO05D009542 2.0e-78 297.0 257 60.7
Thecc.01G280300 Theobroma cacao HOM05D007546 ORTHO05D009542 2.0e-78 297.0 236 63.1
Sabra05G0158800 Salix brachista HOM05D007546 ORTHO05D009542 3.4e-78 296.2 258 62.4
Gohir.A08G068100 Gossypium hirsutum HOM05D007546 ORTHO05D009542 6.3e-77 292.0 259 59.8
Aqoxy2G03310 Aquilegia oxysepala HOM05D007546 ORTHO05D009542 8.3e-77 291.6 245 60.8
Nitab4.5_0001028g0010 Nicotiana tabacum HOM05D007546 ORTHO05D009542 2.0e-75 287.0 256 59.0
MSTRG.18229 Avicennia marina HOM05D007546 ORTHO05D009542 2.5e-73 280.0 259 56.4
ClCG09G006970 Citrullus lanatus HOM05D007546 ORTHO05D009542 9.5e-73 278.1 264 54.5
Nn2g12733 Nelumbo nucifera HOM05D007546 ORTHO05D009542 9.5e-73 278.1 252 56.3
Eucgr.H01486 Eucalyptus grandis HOM05D007546 ORTHO05D009542 2.1e-72 276.9 246 54.9
SalBow4G0341 Salvia bowleyana HOM05D007546 ORTHO05D009542 2.1e-72 276.9 259 56.8
MELO3C015843.2 Cucumis melo HOM05D007546 ORTHO05D009542 3.6e-72 276.2 259 53.7
Potri.005G208700 Populus trichocarpa HOM05D007546 ORTHO05D009542 3.6e-72 276.2 251 59.8
CsaV3_7G028190 Cucumis sativus L. HOM05D007546 ORTHO05D009542 4.7e-72 275.8 259 53.7
Sed0013948 Sechium edule HOM05D007546 ORTHO05D009542 6.1e-72 275.4 257 52.5
Oeu012757.1 Olea europaea HOM05D007546 ORTHO05D009542 1.2e-70 271.2 217 62.7
ECA247G1813 Erigeron canadensis HOM05D007546 ORTHO05D009542 7.5e-70 268.5 258 56.6
PGR119G0241 Punica granatum HOM05D007546 ORTHO05D009542 2.9e-69 266.5 249 53.0
Peaxi162Scf01622g00012 Petunia axillaris HOM05D007546 ORTHO05D009542 4.9e-69 265.8 258 54.7
PSO170G1280 Papaver somniferum HOM05D007546 ORTHO05D009542 2.0e-67 260.4 229 55.5
SGA_v2.0_scaffold1G00465 Striga asiatica HOM05D007546 ORTHO05D009542 3.0e-66 256.5 259 53.7
THA.LOC104801231 Tarenaya hassleriana HOM05D007546 ORTHO05D009542 8.6e-66 255.0 258 53.9
Migut.D00289 Erythranthe guttata HOM05D007546 ORTHO05D009542 1.1e-65 254.6 259 54.8
Manes.01G208300 Manihot esculenta HOM05D007546 ORTHO05D009542 1.2e-64 251.1 208 60.6
PGSC0003DMG402012883 Solanum tuberosum HOM05D007546 ORTHO05D009542 2.1e-64 250.4 257 53.7
Sopen09g026830 Solanum pennellii HOM05D007546 ORTHO05D009542 2.8e-64 250.0 257 53.7
Hund05346 Selenicereus undatus HOM05D007546 ORTHO05D009542 6.2e-64 248.8 245 51.0
MBI19_g16657_MAGBIO Magnolia biondii HOM05D007546 ORTHO05D009542 8.0e-64 248.4 255 53.7
MD11G1286600 Malus domestica HOM05D007546 ORTHO05D009542 1.8e-63 247.3 244 53.7
Solyc09g065110.4 Solanum lycopersicum HOM05D007546 ORTHO05D009542 1.8e-63 247.3 257 52.9
AL1G12670 Arabidopsis lyrata HOM05D007546 ORTHO05D009542 2.3e-63 246.9 260 51.5
Aa31LG1G9350 Aethionema arabicum HOM05D007546 ORTHO05D009542 3.1e-63 246.5 271 50.9
Carub.0001s0232 Capsella rubella HOM05D007546 ORTHO05D009542 5.2e-63 245.7 261 50.6
BraA08t35641Z Brassica rapa HOM05D005387 ORTHO05D006711 8.9e-63 245.0 259 49.8
CANSAT25G0166 Cannabis sativa HOM05D007546 ORTHO05D009542 7.5e-62 241.9 262 52.3
Lj1g0009003 Lotus japonicus HOM05D007546 ORTHO05D009542 1.3e-61 241.1 250 51.2
Sp1g02200 Schrenkiella parvula HOM05D007546 ORTHO05D009542 3.7e-61 239.6 257 49.8
Nitab4.5_0010448g0030 Nicotiana tabacum HOM05D007546 ORTHO05D009542 4.9e-61 239.2 256 52.0
BcaC07g36978 Brassica carinata HOM05D005387 ORTHO05D006711 4.1e-60 236.1 259 49.4
Ca_08577_v3 Cicer arietinum L. HOM05D007546 ORTHO05D009542 1.2e-59 234.6 255 49.4
C08p00480 Brassica napus HOM05D005387 ORTHO05D006711 1.6e-59 234.2 310 41.9
EL10Ac7g17228 Beta vulgaris HOM05D007546 ORTHO05D009542 2.0e-59 233.8 253 49.4
AUR62036823 Chenopodium quinoa HOM05D007546 ORTHO05D009542 2.0e-59 233.8 254 48.4
VMungo1383G0744 Vigna mungo HOM05D007546 ORTHO05D009542 1.7e-58 230.7 229 49.8
A08p37430 Brassica napus HOM05D005387 ORTHO05D006711 3.0e-58 229.9 264 47.0
Thhalv10008478m.g Eutrema salsugineum HOM05D007546 ORTHO05D009542 3.0e-58 229.9 259 47.9
arahy.Tifrunner.gnm1.ann1.N7I060 Arachis hypogaea HOM05D007546 ORTHO05D009542 3.9e-58 229.6 238 47.5
Medtr7g094790 Medicago truncatula HOM05D007546 ORTHO05D009542 1.5e-57 227.6 231 51.9
FvH4_2g23671 Fragaria vesca HOM05D007546 ORTHO05D009542 3.3e-57 226.5 244 49.2
Psat3g064520 Pisum sativum HOM05D007546 ORTHO05D009542 3.3e-57 226.5 250 50.0
arahy.Tifrunner.gnm1.ann1.99CH68 Arachis hypogaea HOM05D007546 ORTHO05D009542 9.5e-57 224.9 242 46.7
arahy.Tifrunner.gnm1.ann1.P6ZKNU Arachis hypogaea HOM05D007546 ORTHO05D009542 2.1e-56 223.8 238 46.2
CAN.G242.7 Capsicum annuum HOM05D007546 ORTHO05D009542 2.3e-55 220.3 221 54.8
Sc05g0004940 Simmondsia chinensis HOM05D007546 ORTHO05D009542 2.3e-55 220.3 216 56.5
Ah.15g091950 Amaranthus hybridus HOM05D007546 ORTHO05D009542 8.9e-55 218.4 221 48.9
Prupe.8G241900 Prunus persica HOM05D007546 ORTHO05D009542 3.4e-54 216.5 252 49.2
RcHm_v2.0_Chr6g0291141 Rosa chinensis HOM05D007546 ORTHO05D009542 3.4e-54 216.5 220 52.3
Cpa.g.sc52.28 Carica papaya HOM05D007546 ORTHO05D009542 3.2e-52 209.9 171 63.7
AUR62038619 Chenopodium quinoa HOM05D007546 ORTHO05D009542 3.5e-51 206.5 265 44.2
Lalb_Chr01g0013761 Lupinus albus HOM05D007546 ORTHO05D009542 3.9e-50 203.0 251 45.4
CARHR002520 Cardamine hirsuta HOM05D007546 ORTHO05D009542 1.9e-49 200.7 211 52.1
ATR0626G078 Amborella trichopoda HOM05D007546 ORTHO05D009542 1.4e-47 194.5 249 46.6
HPP92_010632 Vanilla planifolia HOM05D007546 ORTHO05D009542 6.8e-47 192.2 250 43.6
Os05g0251400 Oryza sativa ssp. japonica HOM05D007546 ORTHO05D009542 1.2e-46 191.4 249 42.2
FAN20G2110 Fragaria x ananassa HOM05D005331 ORTHO05D007596 1.7e-45 187.6 213 48.4
unitig_61.g26331 Utricularia gibba HOM05D007546 ORTHO05D009542 1.7e-45 187.6 260 45.8
FAN24G2921 Fragaria x ananassa HOM05D005331 ORTHO05D007596 4.9e-45 186.0 213 47.9
TPR.G6147 Trifolium pratense HOM05D007546 ORTHO05D009542 2.4e-44 183.7 207 49.3
FAN15G1459 Fragaria x ananassa HOM05D005331 ORTHO05D007596 3.9e-42 176.4 240 42.9
Zm00001eb132020 Zea mays HOM05D007546 ORTHO05D009542 4.3e-41 172.9 245 38.4
AUR62043164 Chenopodium quinoa HOM05D007546 ORTHO05D009542 9.6e-41 171.8 170 52.4
AT1G03180 Arabidopsis thaliana HOM05D007546 ORTHO05D009542 5.2e-39 166.0 174 53.4
Phvul.001G150400 Phaseolus vulgaris HOM05D007546 ORTHO05D009542 6.8e-39 165.6 175 47.4
Glyma.03G153000 Glycine max HOM05D007546 ORTHO05D009542 5.8e-38 162.5 185 43.8
Potri.002G053801 Populus trichocarpa HOM05D007546 ORTHO05D009542 3.0e-34 150.2 140 59.3
CSS0034697 Camellia sinensis var. sinensis HOM05D007546 ORTHO05D009542 1.4e-23 114.8 85 70.6
Glyma.19G155400 Glycine max HOM05D007546 ORTHO05D009542 4.0e-23 113.2 109 47.7
Lj5A228T46 Lonicera japonica HOM05D002317 ORTHO05D002420 1.3e-16 91.7 60 81.7
SalBow4G3151 Salvia bowleyana HOM05D007546 ORTHO05D009542 2.2e-13 80.9 61 60.7
SalBow8G3203 Salvia bowleyana HOM05D007546 ORTHO05D009542 4.9e-13 79.7 61 60.7
SalBow1G5735 Salvia bowleyana HOM05D007546 ORTHO05D009542 1.9e-09 67.8 61 55.7
SalBow1G3448 Salvia bowleyana HOM05D007546 ORTHO05D009542 1.3e-08 65.1 46 63.0
Mapoly0002s0121 Marchantia polymorpha HOM05D007546 ORTHO05D009542 1.6e-08 64.7 241 26.1
Lsat_1_v5_gn_8_136820 Lactuca sativa HOM05D007546 ORTHO05D009542 2.1e-08 64.3 44 61.4
Sabra02G0043800 Salix brachista HOM05D005331 ORTHO05D007596 1.1e-07 62.0 93 47.3
Lsat_1_v5_gn_5_160321 Lactuca sativa HOM05D007546 ORTHO05D009542 3.4e-06 57.0 64 45.3


User provided reference genes

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