Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C1000T6 Lonicera japonica HOM05D004020 ORTHO05D004735 3.1e-78 295.0 148 100.0
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 8.2e-63 243.8 121 100.0
Hma1.2p1_1225F.1_g268540 Hydrangea macrophylla HOM05D004020 ORTHO05D004735 1.8e-54 216.1 120 85.8
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 3.1e-54 215.3 121 88.4
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 4.1e-54 214.9 116 91.4
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 5.3e-54 214.5 116 91.4
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 5.3e-54 214.5 116 91.4
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 9.1e-54 213.8 118 85.6
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 1.6e-53 213.0 116 89.7
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 2.0e-53 212.6 116 90.5
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 3.5e-53 211.8 125 82.4
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 3.5e-53 211.8 116 89.7
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 4.5e-53 211.5 116 88.8
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 4.5e-53 211.5 121 85.1
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 7.7e-53 210.7 116 87.9
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 7.7e-53 210.7 121 85.1
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 7.7e-53 210.7 116 87.9
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 1.0e-52 210.3 119 85.7
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 1.0e-52 210.3 115 88.7
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 1.3e-52 209.9 116 85.3
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 1.3e-52 209.9 121 84.3
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 2.2e-52 209.1 116 87.9
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 2.9e-52 208.8 116 88.8
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 3.8e-52 208.4 118 85.6
DCAR_031637 Daucus carota HOM05D004020 ORTHO05D004735 5.0e-52 208.0 133 79.7
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 5.0e-52 208.0 116 87.9
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 6.5e-52 207.6 116 84.5
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 6.5e-52 207.6 116 87.1
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 8.5e-52 207.2 116 84.5
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 8.5e-52 207.2 116 85.3
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 1.1e-51 206.8 116 84.5
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 1.1e-51 206.8 116 85.3
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 1.1e-51 206.8 115 87.8
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 1.1e-51 206.8 116 87.1
TAR633G2769 Trochodendron aralioides HOM05D004020 ORTHO05D004735 1.1e-51 206.8 121 84.3
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 1.5e-51 206.5 116 86.2
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 1.5e-51 206.5 116 87.1
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 1.9e-51 206.1 116 85.3
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.9e-51 206.1 116 83.6
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 1.9e-51 206.1 116 85.3
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 2.5e-51 205.7 116 82.8
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 2.5e-51 205.7 116 86.2
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 2.5e-51 205.7 116 83.6
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 3.2e-51 205.3 116 85.3
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 3.2e-51 205.3 116 83.6
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 3.2e-51 205.3 116 85.3
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 3.2e-51 205.3 116 83.6
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 3.2e-51 205.3 116 82.8
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 4.2e-51 204.9 122 78.7
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 4.2e-51 204.9 116 85.3
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 5.5e-51 204.5 115 85.2
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 5.5e-51 204.5 116 85.3
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 7.2e-51 204.1 116 86.2
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 9.4e-51 203.8 118 83.9
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 9.4e-51 203.8 116 82.8
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 1.2e-50 203.4 118 83.9
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 1.2e-50 203.4 116 85.3
Haze_23515 Corylus avellana HOM05D004020 ORTHO05D004735 1.6e-50 203.0 116 85.3
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 1.6e-50 203.0 116 81.9
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 1.6e-50 203.0 121 80.2
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 1.6e-50 203.0 122 78.7
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 1.6e-50 203.0 121 81.8
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 1.6e-50 203.0 121 81.8
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 2.1e-50 202.6 125 77.6
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 2.1e-50 202.6 122 77.9
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 2.1e-50 202.6 122 77.9
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 4.7e-50 201.4 116 82.8
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 6.1e-50 201.1 115 82.6
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 8.0e-50 200.7 122 77.0
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 8.0e-50 200.7 115 82.6
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 8.0e-50 200.7 115 82.6
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 1.0e-49 200.3 116 79.3
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 1.0e-49 200.3 116 82.8
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 1.4e-49 199.9 115 83.5
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 1.8e-49 199.5 115 83.5
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 2.3e-49 199.1 119 78.2
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 3.0e-49 198.7 118 79.7
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 3.0e-49 198.7 116 83.6
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 5.2e-49 198.0 118 79.7
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 6.8e-49 197.6 116 81.9
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 8.8e-49 197.2 116 79.3
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 8.8e-49 197.2 116 81.9
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 1.5e-48 196.4 127 74.8
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 1.5e-48 196.4 122 75.4
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 2.6e-48 195.7 118 77.1
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 2.6e-48 195.7 111 83.8
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 3.4e-48 195.3 115 79.1
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 4.4e-48 194.9 116 79.3
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 4.4e-48 194.9 118 77.1
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 7.5e-48 194.1 116 78.4
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 7.5e-48 194.1 118 77.1
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 7.5e-48 194.1 118 77.1
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 7.5e-48 194.1 116 78.4
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 9.8e-48 193.7 118 78.0
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 9.8e-48 193.7 118 78.0
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 9.8e-48 193.7 122 73.8
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 1.3e-47 193.4 118 78.0
HPP92_022573 Vanilla planifolia HOM05D004020 ORTHO05D004735 1.3e-47 193.4 116 79.3
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 3.7e-47 191.8 116 78.4
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 8.3e-47 190.7 102 89.2
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 8.3e-47 190.7 121 75.2
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 1.1e-46 190.3 115 77.4
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 1.8e-46 189.5 116 75.0
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 4.1e-46 188.3 125 72.0
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 2.7e-45 185.7 116 78.4
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 3.8e-44 181.8 125 72.0
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 1.8e-41 172.9 116 73.3
SHI06179 Sapria himalayana HOM05D004020 ORTHO05D004735 2.3e-41 172.6 120 70.8
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 4.9e-39 164.9 142 59.9
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 3.1e-38 162.2 125 59.2
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 9.2e-38 160.6 120 62.5
Cpa.g.sc47.18 Carica papaya HOM05D004020 ORTHO05D004735 2.0e-37 159.5 85 88.2
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 3.5e-37 158.7 121 59.5
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 5.9e-37 157.9 128 57.8
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 1.7e-36 156.4 129 62.0
ClCG01G012880 Citrullus lanatus HOM05D004020 ORTHO05D004735 2.8e-34 149.1 82 84.1
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 3.6e-34 148.7 134 58.2
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 8.0e-34 147.5 87 80.5
CANSAT64G1073 Cannabis sativa HOM05D004020 ORTHO05D004735 5.2e-33 144.8 82 80.5
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 1.2e-32 143.7 103 64.1
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 3.4e-32 142.1 76 88.2
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 2.7e-21 105.9 66 80.3
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 5.1e-20 101.7 116 41.4
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 6.4e-15 84.7 83 55.4
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 2.1e-13 79.7 112 32.1
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 6.2e-10 68.2 129 34.9
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 8.1e-10 67.8 49 65.3
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 1.1e-09 67.4 45 71.1
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 9.9e-08 60.8 41 75.6


User provided reference genes

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