Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A91G56 Lonicera japonica HOM05D005865 ORTHO05D006867 1.4e-54 216.1 109 100.0
Lj4A15G44 Lonicera japonica HOM05D005865 ORTHO05D006867 1.4e-11 73.2 39 87.2
Dinv31911 Davidia involucrata HOM05D005865 ORTHO05D006867 4.1e-11 71.6 38 86.8
Hma1.2p1_1100F.1_g257160 Hydrangea macrophylla HOM05D005865 ORTHO05D006867 1.6e-10 69.7 47 70.2
Hma1.2p1_1100F.1_g257170 Hydrangea macrophylla HOM05D005865 ORTHO05D006867 1.6e-10 69.7 47 70.2
Ciclev10000742m.g Citrus clementina HOM05D005865 ORTHO05D006867 2.0e-10 69.3 38 81.6
Eucgr.F03532 Eucalyptus grandis HOM05D005865 ORTHO05D006867 4.6e-10 68.2 38 78.9
Atru.chr13.184 Acer truncatum HOM05D005865 ORTHO05D006867 6.0e-10 67.8 38 78.9
Nn5g30889 Nelumbo nucifera HOM05D005865 ORTHO05D006867 6.0e-10 67.8 36 83.3
vmacro04388 Vaccinium macrocarpon HOM05D005865 ORTHO05D006867 6.0e-10 67.8 38 78.9
TAR381G0423 Trochodendron aralioides HOM05D005865 ORTHO05D006867 7.8e-10 67.4 38 81.6
CSS0021595 Camellia sinensis var. sinensis HOM05D005865 ORTHO05D006867 1.0e-09 67.0 38 76.3
COL.COLO4_26054 Corchorus olitorius HOM05D005865 ORTHO05D006867 1.7e-09 66.2 36 83.3
ECA238G0937 Erigeron canadensis HOM05D005865 ORTHO05D006867 1.7e-09 66.2 38 76.3
Lj5g0011422 Lotus japonicus HOM05D005865 ORTHO05D006867 1.7e-09 66.2 38 78.9
Gohir.A05G181600 Gossypium hirsutum HOM05D005865 ORTHO05D006867 2.3e-09 65.9 36 83.3
Gohir.D05G184600 Gossypium hirsutum HOM05D005865 ORTHO05D006867 2.3e-09 65.9 36 83.3
Gorai.009G190100 Gossypium raimondii HOM05D005865 ORTHO05D006867 2.3e-09 65.9 36 83.3
Lsat_1_v5_gn_2_5921 Lactuca sativa HOM05D005865 ORTHO05D006867 2.3e-09 65.9 39 74.4
Rhsim07G0252700 Rhododendron simsii HOM05D005865 ORTHO05D006867 2.3e-09 65.9 38 76.3
SalBow6G0433 Salvia bowleyana HOM05D005865 ORTHO05D006867 2.3e-09 65.9 36 80.6
Actinidia37960 Actinidia chinensis HOM05D005865 ORTHO05D006867 3.0e-09 65.5 38 76.3
Duzib093G0711 Durio zibethinus HOM05D005865 ORTHO05D006867 3.0e-09 65.5 36 80.6
Migut.N03192 Erythranthe guttata HOM05D005865 ORTHO05D006867 3.0e-09 65.5 39 74.4
HanXRQChr14g0428991 Helianthus annuus HOM05D005865 ORTHO05D006867 3.0e-09 65.5 39 71.8
Medtr1g026400 Medicago truncatula HOM05D005865 ORTHO05D006867 3.0e-09 65.5 38 76.3
PSO541G4963 Papaver somniferum HOM05D005865 ORTHO05D006867 3.0e-09 65.5 38 76.3
PSO675G0073 Papaver somniferum HOM05D005865 ORTHO05D006867 3.0e-09 65.5 38 76.3
Peaxi162Scf00174g01413 Petunia axillaris HOM05D005865 ORTHO05D006867 3.0e-09 65.5 39 71.8
PGR031G3425 Punica granatum HOM05D005865 ORTHO05D006867 3.0e-09 65.5 45 64.4
Nitab4.5_0000588g0310 Nicotiana tabacum HOM05D005865 ORTHO05D006867 3.9e-09 65.1 39 74.4
Solyc04g082130.4 Solanum lycopersicum HOM05D005865 ORTHO05D006867 3.9e-09 65.1 39 74.4
Sopen04g035760 Solanum pennellii HOM05D005865 ORTHO05D006867 3.9e-09 65.1 39 74.4
VMungo0647G1107 Vigna mungo HOM05D005865 ORTHO05D006867 3.9e-09 65.1 38 76.3
Ah.00g000500 Amaranthus hybridus HOM05D005865 ORTHO05D006867 5.0e-09 64.7 47 61.7
Glyma.14G222900 Glycine max HOM05D005865 ORTHO05D006867 5.0e-09 64.7 38 76.3
EL10Ac1g02030 Beta vulgaris HOM05D005865 ORTHO05D006867 6.6e-09 64.3 60 56.7
Ca_13490_v3 Cicer arietinum L. HOM05D005865 ORTHO05D006867 6.6e-09 64.3 38 76.3
Phvul.001G001600 Phaseolus vulgaris HOM05D005865 ORTHO05D006867 6.6e-09 64.3 38 76.3
Thecc.08G054600 Theobroma cacao HOM05D005865 ORTHO05D006867 1.1e-08 63.5 36 80.6
Psat0s4771g0080 Pisum sativum HOM05D005865 ORTHO05D006867 1.5e-08 63.2 38 73.7
QL02p013522 Quercus lobata HOM05D005865 ORTHO05D006867 1.5e-08 63.2 41 70.7
arahy.Tifrunner.gnm1.ann1.88Q24L Arachis hypogaea HOM05D005865 ORTHO05D006867 1.9e-08 62.8 38 73.7
arahy.Tifrunner.gnm1.ann1.YCE7MW Arachis hypogaea HOM05D005865 ORTHO05D006867 1.9e-08 62.8 38 73.7
MSTRG.1133 Avicennia marina HOM05D005865 ORTHO05D006867 1.9e-08 62.8 38 76.3
CiPaw.07G141800 Carya illinoinensis HOM05D005865 ORTHO05D006867 1.9e-08 62.8 38 73.7
PGSC0003DMG400009964 Solanum tuberosum HOM05D005865 ORTHO05D006867 1.9e-08 62.8 39 71.8
AUR62013839 Chenopodium quinoa HOM05D005865 ORTHO05D006867 2.5e-08 62.4 65 50.8
Aqoxy6G01868 Aquilegia oxysepala HOM05D005865 ORTHO05D006867 3.3e-08 62.0 38 71.1
unitig_747.g21718 Utricularia gibba HOM05D005865 ORTHO05D006867 3.3e-08 62.0 39 71.8
Cfa014029 Carpinus fangiana HOM05D005865 ORTHO05D006867 4.3e-08 61.6 36 75.0
Prupe.1G357400 Prunus persica HOM05D005865 ORTHO05D006867 4.3e-08 61.6 36 77.8
Lalb_Chr03g0033591 Lupinus albus HOM05D005865 ORTHO05D006867 7.3e-08 60.8 38 71.1
Haze_22735 Corylus avellana HOM05D005865 ORTHO05D006867 9.5e-08 60.5 36 75.0
MD08G1005300 Malus domestica HOM05D005865 ORTHO05D006867 9.5e-08 60.5 36 75.0
CANSAT56G1424 Cannabis sativa HOM05D005865 ORTHO05D006867 1.2e-07 60.1 36 75.0
CsaV3_4G037060 Cucumis sativus L. HOM05D005865 ORTHO05D006867 1.2e-07 60.1 45 57.8
SGA_v2.0_scaffold25G11198 Striga asiatica HOM05D005865 ORTHO05D006867 1.2e-07 60.1 44 68.2
Cc10_g00980 Coffea canephora HOM05D005865 ORTHO05D006867 1.6e-07 59.7 34 76.5
FAN27G0680 Fragaria x ananassa HOM05D005865 ORTHO05D006867 1.6e-07 59.7 42 61.9
Os04g0561700 Oryza sativa ssp. japonica HOM05D005865 ORTHO05D006867 1.6e-07 59.7 39 64.1
AL1G33330 Arabidopsis lyrata HOM05D005865 ORTHO05D006867 2.1e-07 59.3 36 72.2
AT1G20410 Arabidopsis thaliana HOM05D005865 ORTHO05D006867 2.1e-07 59.3 36 72.2
Carub.0001s1989 Capsella rubella HOM05D005865 ORTHO05D006867 2.1e-07 59.3 36 72.2
CDE02G0067 Ceratophyllum demersum HOM05D005865 ORTHO05D006867 2.1e-07 59.3 38 65.8
FvH4_2g37810 Fragaria vesca HOM05D005865 ORTHO05D006867 2.1e-07 59.3 36 75.0
RcHm_v2.0_Chr6g0303901 Rosa chinensis HOM05D005865 ORTHO05D006867 2.1e-07 59.3 36 75.0
Hund05136 Selenicereus undatus HOM05D005865 ORTHO05D006867 2.1e-07 59.3 38 71.1
CAN.G311.92 Capsicum annuum HOM05D005865 ORTHO05D006867 2.8e-07 58.9 39 66.7
TWI36G0296 Tripterygium wilfordii HOM05D005865 ORTHO05D006867 3.6e-07 58.5 45 60.0
ATR0665G248 Amborella trichopoda HOM05D005865 ORTHO05D006867 4.7e-07 58.2 38 65.8
ClCG05G015260 Citrullus lanatus HOM05D005865 ORTHO05D006867 4.7e-07 58.2 36 69.4
Manes.18G007801 Manihot esculenta HOM05D005865 ORTHO05D006867 4.7e-07 58.2 36 69.4
BcaC05g25951 Brassica carinata HOM05D005865 ORTHO05D006867 6.2e-07 57.8 36 72.2
C05p19010 Brassica napus HOM05D005865 ORTHO05D006867 6.2e-07 57.8 36 72.2
BolC5t30602H Brassica oleracea HOM05D005865 ORTHO05D006867 6.2e-07 57.8 36 72.2
Sp1g18130 Schrenkiella parvula HOM05D005865 ORTHO05D006867 6.2e-07 57.8 36 72.2
Thhalv10007426m.g Eutrema salsugineum HOM05D005865 ORTHO05D006867 8.0e-07 57.4 36 69.4
GSVIVG01008710001 Vitis vinifera HOM05D005865 ORTHO05D006867 8.0e-07 57.4 38 65.8
HPP92_014547 Vanilla planifolia HOM05D005865 ORTHO05D006867 1.1e-06 57.0 36 66.7
BcaB03g14323 Brassica carinata HOM05D005865 ORTHO05D006867 1.4e-06 56.6 36 69.4
BcaNung03380 Brassica carinata HOM05D005865 ORTHO05D006867 1.4e-06 56.6 36 69.4
A07p15700 Brassica napus HOM05D005865 ORTHO05D006867 1.4e-06 56.6 36 69.4
A07p15800 Brassica napus HOM05D005865 ORTHO05D006867 1.4e-06 56.6 36 69.4
C07p23040 Brassica napus HOM05D005865 ORTHO05D006867 1.4e-06 56.6 36 69.4
BolC7t42845H Brassica oleracea HOM05D005865 ORTHO05D006867 1.4e-06 56.6 36 69.4
BraA07t29307Z Brassica rapa HOM05D005865 ORTHO05D006867 1.4e-06 56.6 36 69.4
CARHR020860 Cardamine hirsuta HOM05D005865 ORTHO05D006867 1.8e-06 56.2 36 69.4
DCAR_013898 Daucus carota HOM05D005865 ORTHO05D006867 1.8e-06 56.2 46 63.0
Aa31LG7G4730 Aethionema arabicum HOM05D005865 ORTHO05D006867 2.3e-06 55.8 36 66.7
Sed0014892 Sechium edule HOM05D005865 ORTHO05D006867 2.3e-06 55.8 36 63.9
BcaB07g32044 Brassica carinata HOM05D005865 ORTHO05D006867 3.1e-06 55.5 36 66.7
A06p16480 Brassica napus HOM05D005865 ORTHO05D006867 5.2e-06 54.7 34 67.6
BraA06t24751Z Brassica rapa HOM05D005865 ORTHO05D006867 5.2e-06 54.7 34 67.6
Sabra05G0191400 Salix brachista HOM05D005865 ORTHO05D006867 5.2e-06 54.7 36 69.4
Potri.005G247500 Populus trichocarpa HOM05D005865 ORTHO05D006867 6.8e-06 54.3 36 69.4
Zm00001eb074060 Zea mays HOM05D005865 ORTHO05D006867 8.9e-06 53.9 37 59.5


User provided reference genes

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