Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A915G14 Lonicera japonica HOM05D004347 ORTHO05D005270 1.4e-110 402.9 199 100.0
Lj2A1048T54 Lonicera japonica HOM05D004347 ORTHO05D005270 3.6e-90 335.1 262 71.4
DCAR_022470 Daucus carota HOM05D004347 ORTHO05D005270 6.4e-87 324.3 262 67.9
ECA233G5914 Erigeron canadensis HOM05D004347 ORTHO05D005270 8.4e-87 323.9 262 67.9
Lsat_1_v5_gn_6_14781 Lactuca sativa HOM05D004347 ORTHO05D005270 1.1e-86 323.6 262 67.9
TWI56G0865 Tripterygium wilfordii HOM05D004347 ORTHO05D005270 2.4e-86 322.4 262 66.8
COL.COLO4_26277 Corchorus olitorius HOM05D004347 ORTHO05D005270 5.5e-86 321.2 262 67.6
Thecc.08G030400 Theobroma cacao HOM05D004347 ORTHO05D005270 7.1e-86 320.9 262 67.2
Potri.005G229400 Populus trichocarpa HOM05D004347 ORTHO05D005270 2.1e-85 319.3 262 66.0
GSVIVG01009739001 Vitis vinifera HOM05D004347 ORTHO05D005270 2.7e-85 318.9 262 66.8
TAR628G1165 Trochodendron aralioides HOM05D004347 ORTHO05D005270 3.5e-85 318.5 262 67.2
CSS0015335 Camellia sinensis var. sinensis HOM05D004347 ORTHO05D005270 6.0e-85 317.8 262 66.8
Gohir.D05G195800 Gossypium hirsutum HOM05D004347 ORTHO05D005270 6.0e-85 317.8 262 66.4
Gorai.009G200700 Gossypium raimondii HOM05D004347 ORTHO05D005270 7.9e-85 317.4 262 66.4
FAN15G0129 Fragaria x ananassa HOM05D004347 ORTHO05D005270 1.0e-84 317.0 262 66.0
Prupe.1G376500 Prunus persica HOM05D004347 ORTHO05D005270 1.0e-84 317.0 260 65.8
Manes.05G157200 Manihot esculenta HOM05D004347 ORTHO05D005270 2.3e-84 315.8 262 66.4
Peaxi162Scf00064g00534 Petunia axillaris HOM05D004347 ORTHO05D005270 2.3e-84 315.8 262 66.0
HanXRQChr05g0152041 Helianthus annuus HOM05D004347 ORTHO05D005270 3.0e-84 315.5 262 65.6
Eucgr.F01880 Eucalyptus grandis HOM05D004347 ORTHO05D005270 3.9e-84 315.1 262 66.0
FAN27G2720 Fragaria x ananassa HOM05D004347 ORTHO05D005270 3.9e-84 315.1 262 65.6
RcHm_v2.0_Chr6g0301371 Rosa chinensis HOM05D004347 ORTHO05D005270 5.1e-84 314.7 262 65.6
MSTRG.7482 Avicennia marina HOM05D004347 ORTHO05D005270 8.7e-84 313.9 262 64.9
Haze_22527 Corylus avellana HOM05D004347 ORTHO05D005270 8.7e-84 313.9 262 65.3
Gohir.A05G192600 Gossypium hirsutum HOM05D004347 ORTHO05D005270 8.7e-84 313.9 262 65.6
Nitab4.5_0004802g0040 Nicotiana tabacum HOM05D004347 ORTHO05D005270 8.7e-84 313.9 262 65.3
FAN20G0532 Fragaria x ananassa HOM05D004347 ORTHO05D005270 1.1e-83 313.5 262 65.6
Hma1.2p1_0203F.1_g086150 Hydrangea macrophylla HOM05D004347 ORTHO05D005270 1.1e-83 313.5 262 66.0
CAN.G847.3 Capsicum annuum HOM05D004347 ORTHO05D005270 1.5e-83 313.2 262 65.6
Duzib093G0814 Durio zibethinus HOM05D004347 ORTHO05D005270 1.5e-83 313.2 262 65.3
TAR376G0652 Trochodendron aralioides HOM05D004347 ORTHO05D005270 1.9e-83 312.8 262 65.6
Aa31LG4G5540 Aethionema arabicum HOM05D004347 ORTHO05D005270 2.5e-83 312.4 262 64.9
Ciclev10001509m.g Citrus clementina HOM05D004347 ORTHO05D005270 2.5e-83 312.4 262 63.7
Solyc04g080610.3 Solanum lycopersicum HOM05D004347 ORTHO05D005270 2.5e-83 312.4 262 64.5
Sopen04g034200 Solanum pennellii HOM05D004347 ORTHO05D005270 2.5e-83 312.4 262 64.5
PGSC0003DMG400003741 Solanum tuberosum HOM05D004347 ORTHO05D005270 2.5e-83 312.4 262 64.9
Nitab4.5_0001091g0050 Nicotiana tabacum HOM05D004347 ORTHO05D005270 3.3e-83 312.0 262 64.9
Sabra05G0177200 Salix brachista HOM05D004347 ORTHO05D005270 4.3e-83 311.6 262 64.5
Cfa013854 Carpinus fangiana HOM05D004347 ORTHO05D005270 7.4e-83 310.8 262 64.5
FvH4_2g39540 Fragaria vesca HOM05D004347 ORTHO05D005270 7.4e-83 310.8 262 64.9
MD15G1024200 Malus domestica HOM05D004347 ORTHO05D005270 7.4e-83 310.8 262 64.5
Solyc12g089210.2 Solanum lycopersicum HOM05D004347 ORTHO05D005270 9.6e-83 310.5 262 64.9
Sopen12g031090 Solanum pennellii HOM05D004347 ORTHO05D005270 9.6e-83 310.5 262 64.9
AUR62002295 Chenopodium quinoa HOM05D004347 ORTHO05D005270 1.3e-82 310.1 259 65.6
Aqoxy5G01587 Aquilegia oxysepala HOM05D004347 ORTHO05D005270 1.6e-82 309.7 262 65.3
Nitab4.5_0008031g0060 Nicotiana tabacum HOM05D004347 ORTHO05D005270 1.6e-82 309.7 262 64.5
Rhsim07G0240900 Rhododendron simsii HOM05D004347 ORTHO05D005270 1.6e-82 309.7 262 65.3
RhsimUnG0052000 Rhododendron simsii HOM05D004347 ORTHO05D005270 1.6e-82 309.7 262 65.3
Cc01_g07560 Coffea canephora HOM05D004347 ORTHO05D005270 2.1e-82 309.3 262 66.0
SGA_v2.0_scaffold1G00165 Striga asiatica HOM05D004347 ORTHO05D005270 2.8e-82 308.9 262 64.5
Atru.chr13.439 Acer truncatum HOM05D004347 ORTHO05D005270 3.7e-82 308.5 262 63.0
AUR62015395 Chenopodium quinoa HOM05D004347 ORTHO05D005270 3.7e-82 308.5 259 65.3
CSS0031902 Camellia sinensis var. sinensis HOM05D004347 ORTHO05D005270 4.8e-82 308.1 262 65.3
CSS0033638 Camellia sinensis var. sinensis HOM05D004347 ORTHO05D005270 4.8e-82 308.1 262 65.3
Migut.M00916 Erythranthe guttata HOM05D004347 ORTHO05D005270 4.8e-82 308.1 262 65.3
PSO210G5717 Papaver somniferum HOM05D004347 ORTHO05D005270 4.8e-82 308.1 262 64.5
QL02p009188 Quercus lobata HOM05D004347 ORTHO05D005270 4.8e-82 308.1 261 64.4
THA.LOC104811378 Tarenaya hassleriana HOM05D004347 ORTHO05D005270 4.8e-82 308.1 262 64.5
PGSC0003DMG400015463 Solanum tuberosum HOM05D004347 ORTHO05D005270 6.2e-82 307.8 262 64.1
BcaB02g07020 Brassica carinata HOM05D004347 ORTHO05D005270 8.1e-82 307.4 262 64.1
BcaC08g45584 Brassica carinata HOM05D004347 ORTHO05D005270 8.1e-82 307.4 262 64.1
A07p28900 Brassica napus HOM05D004347 ORTHO05D005270 8.1e-82 307.4 262 64.1
C06p32680 Brassica napus HOM05D004347 ORTHO05D005270 8.1e-82 307.4 262 64.1
BolC6t38392H Brassica oleracea HOM05D004347 ORTHO05D005270 8.1e-82 307.4 262 64.1
CANSAT11G1506 Cannabis sativa HOM05D004347 ORTHO05D005270 8.1e-82 307.4 262 64.5
CsaV3_3G045350 Cucumis sativus L. HOM05D004347 ORTHO05D005270 8.1e-82 307.4 262 64.5
Oeu031257.1 Olea europaea HOM05D004347 ORTHO05D005270 8.1e-82 307.4 262 64.5
Hund03153 Selenicereus undatus HOM05D004347 ORTHO05D005270 8.1e-82 307.4 259 64.1
PSO302G0103 Papaver somniferum HOM05D004347 ORTHO05D005270 1.1e-81 307.0 262 64.5
Sp5g30470 Schrenkiella parvula HOM05D004347 ORTHO05D005270 1.1e-81 307.0 262 64.1
Actinidia29814 Actinidia chinensis HOM05D004347 ORTHO05D005270 1.8e-81 306.2 262 64.5
PGR031G1892 Punica granatum HOM05D004347 ORTHO05D005270 1.8e-81 306.2 260 64.2
CDE02G4169 Ceratophyllum demersum HOM05D004347 ORTHO05D005270 2.4e-81 305.8 261 64.0
SalBow8G0833 Salvia bowleyana HOM05D004347 ORTHO05D005270 2.4e-81 305.8 262 64.9
Ah.08g222650 Amaranthus hybridus HOM05D004347 ORTHO05D005270 3.1e-81 305.4 262 64.1
MD08G1028500 Malus domestica HOM05D004347 ORTHO05D005270 3.1e-81 305.4 262 64.5
Nitab4.5_0003265g0100 Nicotiana tabacum HOM05D004347 ORTHO05D005270 4.0e-81 305.1 262 63.4
Oeu030920.1 Olea europaea HOM05D004347 ORTHO05D005270 5.3e-81 304.7 262 63.7
AL2G35250 Arabidopsis lyrata HOM05D004347 ORTHO05D005270 9.0e-81 303.9 262 63.7
CAN.G1226.45 Capsicum annuum HOM05D004347 ORTHO05D005270 9.0e-81 303.9 262 64.5
CARHR068670 Cardamine hirsuta HOM05D004347 ORTHO05D005270 9.0e-81 303.9 262 63.7
Thhalv10018722m.g Eutrema salsugineum HOM05D004347 ORTHO05D005270 9.0e-81 303.9 262 63.4
Lalb_Chr24g0398901 Lupinus albus HOM05D004347 ORTHO05D005270 1.2e-80 303.5 260 63.8
vmacro04537 Vaccinium macrocarpon HOM05D004347 ORTHO05D005270 1.2e-80 303.5 262 64.5
ATR0568G211 Amborella trichopoda HOM05D004347 ORTHO05D005270 2.0e-80 302.8 262 63.0
EL10Ac3g05924 Beta vulgaris HOM05D004347 ORTHO05D005270 2.6e-80 302.4 260 63.8
CDE06G1278 Ceratophyllum demersum HOM05D004347 ORTHO05D005270 2.6e-80 302.4 261 63.2
Ca_15501_v3 Cicer arietinum L. HOM05D004347 ORTHO05D005270 2.6e-80 302.4 260 63.1
unitig_8.g4581 Utricularia gibba HOM05D004347 ORTHO05D005270 3.4e-80 302.0 262 62.6
Lalb_Chr14g0369401 Lupinus albus HOM05D004347 ORTHO05D005270 4.5e-80 301.6 260 63.5
PSO063G7652 Papaver somniferum HOM05D004347 ORTHO05D005270 5.8e-80 301.2 262 63.0
ClCG05G018820 Citrullus lanatus HOM05D004347 ORTHO05D005270 1.0e-79 300.4 281 60.1
Lj1g0017536 Lotus japonicus HOM05D004347 ORTHO05D005270 1.0e-79 300.4 260 63.1
AT1G75330 Arabidopsis thaliana HOM05D004347 ORTHO05D005270 1.3e-79 300.1 262 63.0
Sed0020994 Sechium edule HOM05D004347 ORTHO05D005270 2.9e-79 298.9 262 62.2
VMungo1309G0178 Vigna mungo HOM05D004347 ORTHO05D005270 3.8e-79 298.5 260 62.3
Medtr3g112050 Medicago truncatula HOM05D004347 ORTHO05D005270 6.5e-79 297.7 260 61.9
CiPaw.07G159300 Carya illinoinensis HOM05D004347 ORTHO05D005270 1.4e-78 296.6 260 63.1
Glyma.06G030600 Glycine max HOM05D004347 ORTHO05D005270 1.4e-78 296.6 260 61.5
Carub.0002s2216 Capsella rubella HOM05D004347 ORTHO05D005270 1.9e-78 296.2 262 62.6
MBI18_g10579_MAGBIO Magnolia biondii HOM05D004347 ORTHO05D005270 1.9e-78 296.2 262 62.2
BcaB05g24901 Brassica carinata HOM05D004347 ORTHO05D005270 4.2e-78 295.0 252 63.5
BolC2t09280H Brassica oleracea HOM05D004347 ORTHO05D005270 4.2e-78 295.0 262 61.8
Nn5g29661 Nelumbo nucifera HOM05D004347 ORTHO05D005270 4.2e-78 295.0 218 71.6
Psat5g016520 Pisum sativum HOM05D004347 ORTHO05D005270 5.5e-78 294.7 260 61.2
Glyma.04G030500 Glycine max HOM05D004347 ORTHO05D005270 2.1e-77 292.7 259 61.0
Phvul.009G059600 Phaseolus vulgaris HOM05D004347 ORTHO05D005270 2.3e-76 289.3 260 60.4
Cpa.g.sc1000.1 Carica papaya HOM05D000705 ORTHO05D001273 3.9e-76 288.5 246 64.6
Zm00001eb188330 Zea mays HOM05D004347 ORTHO05D005270 1.5e-75 286.6 260 60.4
SEGI_09245 Sequoiadendron giganteum HOM05D004347 ORTHO05D005270 3.3e-75 285.4 262 59.2
SEGI_25489 Sequoiadendron giganteum HOM05D004347 ORTHO05D005270 3.3e-75 285.4 262 59.2
Os02g0704800 Oryza sativa ssp. japonica HOM05D004347 ORTHO05D005270 1.6e-74 283.1 260 60.0
HPP92_000284 Vanilla planifolia HOM05D004347 ORTHO05D005270 2.8e-74 282.3 262 58.4
Pp3c9_2740 Physcomitrium patens HOM05D004347 ORTHO05D005270 5.3e-73 278.1 262 58.4
Pp3c9_2745 Physcomitrium patens HOM05D004347 ORTHO05D005270 5.3e-73 278.1 262 58.4
CBR_g28659 Chara braunii HOM05D004347 ORTHO05D005270 1.2e-72 276.9 260 58.1
Ah.07g201940 Amaranthus hybridus HOM05D004347 ORTHO05D005270 4.5e-72 275.0 259 59.5
Pp3c15_7070 Physcomitrium patens HOM05D004347 ORTHO05D005270 4.5e-72 275.0 262 58.4
SMO298G0050 Selaginella moellendorffii HOM05D004347 ORTHO05D005270 4.5e-72 275.0 260 59.2
arahy.Tifrunner.gnm1.ann1.S41V7E Arachis hypogaea HOM05D004347 ORTHO05D005270 6.5e-71 271.2 335 49.9
arahy.Tifrunner.gnm1.ann1.YLZT45 Arachis hypogaea HOM05D004347 ORTHO05D005270 6.5e-71 271.2 335 49.9
BcaC03g15560 Brassica carinata HOM05D004347 ORTHO05D005270 2.5e-70 269.2 251 58.6
Mapoly0003s0042 Marchantia polymorpha HOM05D004347 ORTHO05D005270 3.2e-70 268.9 260 58.5
Lj5g0006178 Lotus japonicus HOM05D004347 ORTHO05D005270 1.2e-69 266.9 260 54.2
TPR.G20180 Trifolium pratense HOM05D004347 ORTHO05D005270 2.7e-69 265.8 260 54.2
Medtr1g022420 Medicago truncatula HOM05D004347 ORTHO05D005270 3.6e-69 265.4 260 54.2
PSO409G0040 Papaver somniferum HOM05D004347 ORTHO05D005270 3.6e-69 265.4 199 69.8
Lj2A1046T54 Lonicera japonica HOM05D004347 ORTHO05D005270 4.6e-69 265.0 271 59.0
C02p32480 Brassica napus HOM05D004347 ORTHO05D005270 2.3e-68 262.7 246 58.5
Dinv36108 Davidia involucrata HOM05D004347 ORTHO05D005270 3.0e-68 262.3 277 54.5
Psat6g009200 Pisum sativum HOM05D004347 ORTHO05D005270 6.9e-65 251.1 260 51.9
PRCOL_00003337 Prasinoderma coloniale HOM05D004347 ORTHO05D005270 1.7e-63 246.5 262 53.4
Actinidia37998 Actinidia chinensis HOM05D004347 ORTHO05D005270 5.5e-62 241.5 232 59.5
Peaxi162Scf00140g00025 Petunia axillaris HOM05D004347 ORTHO05D005270 1.1e-59 233.8 221 61.1
Cre12.g489700 Chlamydomonas reinhardtii HOM05D004347 ORTHO05D005270 1.8e-57 226.5 259 50.2
MCO01G430 Micromonas commoda HOM05D004347 ORTHO05D005270 4.1e-57 225.3 262 48.1
Dinv39440 Davidia involucrata HOM05D004347 ORTHO05D005270 3.0e-52 209.1 202 59.4
Sc15g0007070 Simmondsia chinensis HOM05D004347 ORTHO05D005270 5.7e-51 204.9 202 57.4
Zm00001eb255250 Zea mays HOM05D004347 ORTHO05D005270 2.8e-50 202.6 221 52.0
MELO3C003814.2 Cucumis melo HOM05D004347 ORTHO05D005270 2.4e-49 199.5 202 56.9
Zm00001eb403320 Zea mays HOM05D004347 ORTHO05D005270 8.5e-47 191.0 176 59.1
Zm00001eb252020 Zea mays HOM05D004347 ORTHO05D005270 7.2e-46 188.0 202 53.5
Ah.07g198360 Amaranthus hybridus HOM05D004347 ORTHO05D005270 6.7e-44 181.4 159 63.5
TPR.G13537 Trifolium pratense HOM05D004347 ORTHO05D005270 5.5e-38 161.8 148 58.8
Actinidia27745 Actinidia chinensis HOM05D004347 ORTHO05D005270 2.1e-37 159.8 125 68.0
Zm00001eb126200 Zea mays HOM05D004347 ORTHO05D005270 1.8e-36 156.8 171 53.2
A02p19860 Brassica napus HOM05D004347 ORTHO05D005270 2.5e-30 136.3 79 81.0
BraA02t07019Z Brassica rapa HOM05D004347 ORTHO05D005270 2.5e-30 136.3 79 81.0
Lj2A897T24 Lonicera japonica HOM05D004347 ORTHO05D005270 2.5e-30 136.3 69 94.2
CAN.G312.9 Capsicum annuum HOM05D004347 ORTHO05D005270 1.4e-25 120.6 111 59.5
TPR.G12496 Trifolium pratense HOM05D004347 ORTHO05D005270 4.5e-24 115.5 66 81.8
Lj2C1046T8 Lonicera japonica HOM05D004347 ORTHO05D005270 1.8e-20 103.6 56 91.1
Ca_31259_v3 Cicer arietinum L. HOM05D004347 ORTHO05D005270 2.3e-20 103.2 96 46.9
Ca_29133_v3 Cicer arietinum L. HOM05D004347 ORTHO05D005270 3.0e-20 102.8 279 29.7
Zm00001eb001310 Zea mays HOM05D004347 ORTHO05D005270 6.8e-20 101.7 123 48.0
Zm00001eb257230 Zea mays HOM05D004347 ORTHO05D005270 6.8e-20 101.7 123 48.0
Zm00001eb419090 Zea mays HOM05D004347 ORTHO05D005270 6.8e-20 101.7 123 48.0
Zm00001eb216710 Zea mays HOM05D004347 ORTHO05D005270 1.2e-19 100.9 123 48.0
Cfa022292 Carpinus fangiana HOM05D004347 ORTHO05D005270 8.3e-18 94.7 263 30.4
Haze_26855 Corylus avellana HOM05D000826 ORTHO05D004603 2.7e-08 63.2 76 44.7


User provided reference genes

Program Settings